Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8UC7	42116	2024-09-27	2023-09-25	2.9	3.13	2.84	3.1	0.015	1.75	4.0	0.09	13.19	0.01	2.560	2.24	0.00	1.7	98.3	0.0	-0.57	0.61	0.79	6.07	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14840	1936	8	0	16	0	0	logfile
✘	8iZ9	35836	2024-09-25	2023-04-06	2.95	3.38	3.07	3.3	0.002	0.56	0.0	0.04	14.57	0.01	2.273	7.52	0.00	2.4	97.6	0.0	-0.94	0.52	0.61	0.25	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9779	1224	2	0	1	0	0	logfile
✘	8iHM	35449	2024-09-26	2023-02-23	3.58	4.09	3.79	3.9	0.007	0.75	0.0	0.04	29.27	0.00	2.297	10.88	0.00	3.9	96.1	0.0	-3.94	0.84	0.83	2.02	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13153	885	12	317	0	0	0	logfile
✘	8oRS	17131	2024-09-25	2023-04-17	4.3	3.48	3.31	3.3	0.003	0.55	0.0	0.05	13.61	0.00	2.121	7.43	0.00	4.5	95.5	0.0	0.02	0.49	0.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10124	1298	4	0	2	0	0	logfile
✘	8GEA	29962	2024-09-24	2023-03-06	3.5	3.84	3.59	3.8	0.003	0.48	0.0	0.04	12.73	0.00	2.269	6.68	0.00	2.1	97.9	0.0	1.14	0.69	0.81	2.99	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6551	902	5	0	1	0	0	logfile
✘	8GFZ	29989	2024-09-24	2023-03-08	3.0	3.28	3.08	3.3	0.003	0.50	0.0	0.04	13.53	0.00	2.201	2.21	0.00	1.7	98.3	0.0	0.72	0.65	0.88	4.18	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6744	891	6	0	2	5	0	logfile
✘	8UNS	42415	2024-09-24	2023-10-19	3.4	3.73	3.46	3.7	0.004	0.77	0.0	0.05	14.48	0.00	2.332	3.61	0.00	2.1	97.9	0.0	1.05	0.65	0.86	4.13	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6683	916	6	0	2	1	0	logfile
✘	8GE9	29961	2024-09-24	2023-03-06	3.5	3.79	3.53	3.8	0.003	0.56	0.0	0.04	13.04	0.00	2.215	7.69	0.00	1.7	98.3	0.0	1.38	0.70	0.82	2.93	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6519	900	5	0	1	1	0	logfile
✘	8HQ7	34946	2024-09-25	2022-12-13	2.7	2.88	2.96	2.8	0.003	0.72	0.0	0.05	12.54	0.01	2.131	5.95	0.00	4.8	95.2	0.0	0.23	0.77	0.85	4.00	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8292	1082	6	0	2	0	0	logfile
✘	8HLB	34871	2024-09-24	2022-11-29	3.63	3.93	3.68	4.0	0.003	0.65	1.0	0.04	13.64	0.01	2.204	10.49	0.00	8.4	91.2	0.4	-2.13	0.70	0.75	2.35	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7461	977	5	0	0	0	0	logfile
✘	8DAN	27271	2024-09-28	2022-06-13	4.74	5.06	4.76	5.0	0.003	0.53	0.0	0.04	13.83	0.00	1.929	10.23	0.00	4.5	95.5	0.0	-0.75	0.65	0.60	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	68968	4472	24	0	12	0	33968	logfile
✘	8QU9	18658	2024-09-28	2023-10-15	2.88	2.61	2.88	2.8	0.003	0.56	0.0	0.03	17.55	0.00	0.000	10.00	0.00	0.0	100.0	0.0	-2.00	0.74	0.87	3.94	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72756	8836	141	0	94	47	0	logfile
✘	8TVS	41650	2024-09-25	2023-08-18	4.4	4.59	4.48	4.1	0.004	0.77	0.0	0.05	15.19	0.00	1.713	10.23	0.00	4.5	95.5	0.1	-0.62	0.83	0.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	56913	3697	22	104	443	0	24971	logfile
✘	8U14	41801	2024-09-28	2023-08-30	3.9	4.27	3.88	4.0	0.003	0.65	0.0	0.04	26.36	0.00	1.330	14.66	0.00	3.3	96.7	0.0	0.65	0.88	0.83	1.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13995	1006	13	293	2	0	0	logfile
✘	8SEK	40419	2024-09-23	2023-04-10	3.5	3.55	3.07	3.8	0.032	2.39	0.0	0.14	10.43	0.01	2.397	1.27	0.00	20.0	80.0	0.0	-3.19	0.49	0.76	4.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2380	320	10	0	0	0	0	logfile
✘	8Q8S	18259	2024-09-25	2023-08-18	2.68	2.07	2.67	2.3	0.011	2.11	3.0	0.10	9.52	0.01	2.513	0.47	0.00	7.2	92.8	0.0	-1.68	0.30	0.74	5.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10611	684	9	0	0	0	5409	logfile
✘	9B03	44026	2024-09-30	2024-03-11	2.95	3.69	—	3.2	0.005	0.96	0.0	0.06	13.38	0.01	2.097	1.93	0.00	3.0	97.0	0.0	-2.06	0.84	0.83	2.02	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23896	3020	14	0	12	0	0	logfile
✘	8P4X	17429	2024-09-24	2023-05-23	2.57	2.74	2.57	2.8	0.004	0.56	0.0	0.04	13.12	0.00	2.112	1.65	0.00	3.6	96.4	0.0	-0.11	0.74	0.85	5.24	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8756	1052	6	0	4	84	0	logfile
✘	8BYS	16332	2024-09-24	2022-12-13	3.28	3.60	3.29	3.7	0.004	0.56	0.0	0.04	13.51	0.00	2.195	6.52	0.00	6.0	94.0	0.0	-0.91	0.70	0.83	3.36	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7406	968	3	0	0	0	0	logfile
✘	8HMA	34891	2024-09-28	2022-12-02	3.4	3.79	3.59	3.7	0.005	0.58	0.0	0.04	14.85	0.00	2.196	7.66	0.00	5.6	94.4	0.0	-0.67	0.62	0.78	2.23	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19101	2333	5	0	19	0	0	logfile

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