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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6GB2 | 4370 | 2024-01-18 | 2018-04-13 | 3.2 | 3.20 | 3.10 | 3.1 | 0.007 | 1.14 | 0.0 | 0.05 | 20.45 | 0.01 | 1.865 | 9.38 | 10.13 | 4.0 | 95.9 | 0.2 | -2.82 | 0.85 | 0.89 | 2.34 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 111109 | 9312 | 78 | 1687 | 225 | 2 | 0 | logfile |
✘ | 6JSi | 9882 | 2024-01-19 | 2019-04-08 | 4.7 | 4.70 | — | 4.6 | 0.007 | 1.48 | 0.0 | 0.06 | 15.33 | 0.01 | 2.231 | 10.68 | 2.42 | 23.2 | 72.3 | 4.5 | -6.05 | 0.64 | 0.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62820 | 5844 | 9 | 0 | 4044 | 0 | 0 | logfile |
✘ | 8DL7 | 27498 | 2024-01-17 | 2022-07-07 | 2.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6586 | 909 | 6 | 0 | 4 | 1 | 0 | logfile |
✘ | 7E32 | 30974 | 2024-01-18 | 2021-02-07 | 2.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8797 | 1117 | 5 | 0 | 2 | 0 | 0 | logfile |
✘ | 7W0H | 32242 | 2024-01-20 | 2021-11-18 | 3.4 | 3.64 | — | 3.6 | 0.007 | 0.77 | 0.0 | 0.04 | 18.61 | 0.01 | 2.191 | 8.69 | 0.20 | 4.0 | 96.0 | 0.0 | 1.21 | 0.82 | 0.89 | 2.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 66850 | 8140 | 70 | 0 | 40 | 0 | 0 | logfile |
✘ | 6QCM | 4508 | 2024-01-17 | 2018-12-28 | 4.21 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✘ | 7WLM | 32588 | 2024-01-18 | 2022-01-13 | 2.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7308 | 603 | 9 | 0 | 51 | 54 | 0 | logfile |
✘ | 8C02 | 16353 | 2024-01-17 | 2022-12-15 | 4.09 | 4.26 | 4.03 | 4.2 | 0.004 | 0.83 | 0.0 | 0.04 | 13.16 | 0.01 | 2.225 | 19.86 | 0.44 | 4.1 | 95.9 | 0.0 | 1.51 | 0.58 | 0.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4242 | 549 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 8DMB | 27533 | 2024-01-20 | 2022-07-08 | 3.1 | 3.10 | 3.12 | 3.1 | 0.005 | 0.91 | 0.0 | 0.05 | 22.76 | 0.01 | 2.091 | 0.28 | 0.74 | 2.5 | 97.5 | 0.0 | 0.39 | 0.69 | 0.81 | 4.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14225 | 328 | 5 | 275 | 2 | 0 | 5728 | logfile |
✘ | 7D1T | 30547 | 2024-01-17 | 2020-09-15 | 1.95 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 52994 | 5312 | 108 | 0 | 196 | 2432 | 0 | logfile |
✘ | 8HTU | 35018 | 2024-01-18 | 2022-12-21 | 2.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 57715 | 5089 | 51 | 0 | 366 | 2 | 0 | logfile |
✘ | 6N27 | 9325 | 2024-01-20 | 2018-11-12 | 3.0 | 3.04 | — | 3.0 | 0.007 | 0.88 | 0.0 | 0.05 | 9.61 | 0.01 | 2.305 | 3.26 | 0.00 | 1.8 | 98.2 | 0.0 | -2.91 | 0.72 | 0.86 | 4.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13930 | 1695 | 10 | 0 | 5 | 0 | 0 | logfile |
✘ | 8EFB | 28077 | 2024-01-18 | 2022-09-08 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8947 | 1136 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 7E0J | 30934 | 2024-01-18 | 2021-01-28 | 3.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8140 | 672 | 6 | 0 | 56 | 0 | 0 | logfile |
✘ | 6PoD | 20412 | 2024-01-17 | 2019-07-03 | 4.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 53637 | 3427 | 20 | 0 | 25 | 0 | 26898 | logfile |
✘ | 7SBF | 24978 | 2024-01-18 | 2021-09-24 | 2.9 | 3.28 | — | 3.2 | 0.005 | 0.65 | 0.0 | 0.05 | 12.82 | 0.00 | 2.200 | 7.87 | 0.23 | 3.8 | 96.1 | 0.1 | -0.02 | 0.75 | 0.82 | 3.04 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8525 | 1119 | 5 | 0 | 1 | 0 | 0 | logfile |
✘ | 7C77 | 30294 | 2024-01-18 | 2020-05-23 | 3.3 | 3.60 | — | 3.8 | 0.003 | 0.67 | 0.0 | 0.04 | 16.65 | 0.00 | 2.209 | 9.34 | 1.88 | 5.0 | 94.9 | 0.1 | -2.63 | 0.58 | 0.75 | 1.54 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9762 | 1183 | 9 | 0 | 20 | 0 | 0 | logfile |
✘ | 6KN8 | 0729 | 2024-01-18 | 2019-08-03 | 4.8 | 8.89 | — | 8.4 | 0.019 | 1.81 | 10.0 | 0.10 | 12.39 | 0.01 | 2.211 | 9.21 | 0.41 | 2.0 | 97.4 | 0.5 | -0.24 | 0.74 | 0.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 60966 | 7669 | 44 | 0 | 15 | 0 | 0 | logfile |
✘ | 5XNN | 6743 | 2024-01-19 | 2017-05-23 | 3.6 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10020 | 854 | 8 | 0 | 72 | 0 | 0 | logfile |
✘ | 5WC3 | 8795 | 2024-01-19 | 2017-06-29 | 3.5 | 3.53 | — | 3.5 | 0.015 | 1.18 | 0.0 | 0.06 | 9.37 | 0.01 | 1.925 | 12.86 | 0.00 | 8.0 | 90.5 | 1.5 | -5.20 | 0.79 | 0.76 | 2.30 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 65880 | 4170 | 30 | 0 | 0 | 0 | 33390 | logfile |