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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 5WC3 | 8795 | 2024-01-19 | 2017-06-29 | 3.5 | 3.53 | — | 3.5 | 0.015 | 1.18 | 0.0 | 0.06 | 9.37 | 0.01 | 1.925 | 12.86 | 0.00 | 8.0 | 90.5 | 1.5 | -5.20 | 0.79 | 0.76 | 2.30 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 65880 | 4170 | 30 | 0 | 0 | 0 | 33390 | logfile |
✘ | 6S6B | 10102 | 2024-01-20 | 2019-07-02 | 2.75 | 3.35 | 3.07 | 3.2 | 0.005 | 0.76 | 0.0 | 0.05 | 14.86 | 0.00 | 1.961 | 19.06 | 0.15 | 15.3 | 84.3 | 0.4 | -5.13 | 0.77 | 0.82 | 2.59 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 66914 | 8194 | 39 | 51 | 1 | 0 | 0 | logfile |
✘ | 6N7S | 0362 | 2024-01-19 | 2018-11-28 | 4.6 | 4.47 | — | 4.4 | 0.008 | 1.20 | 0.0 | 0.07 | 14.87 | 0.01 | 1.812 | 8.33 | 1.04 | 12.5 | 87.5 | 0.0 | -5.07 | 0.69 | 0.54 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12783 | 1607 | 11 | 13 | 8 | 0 | 0 | logfile |
✘ | 6iJZ | 9682 | 2024-01-19 | 2018-10-12 | 3.68 | 3.76 | — | 3.7 | 0.008 | 1.11 | 0.0 | 0.06 | 10.64 | 0.01 | 2.000 | 4.54 | 0.69 | 10.9 | 88.8 | 0.3 | -5.03 | 0.57 | 0.80 | 2.19 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10964 | 1366 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 6XXE | 10648 | 2024-01-19 | 2020-01-27 | 3.49 | 2.31 | — | 3.3 | 0.007 | 1.09 | 0.0 | 0.06 | 11.82 | 0.00 | 2.471 | 6.11 | 2.27 | 11.0 | 89.0 | 0.0 | -4.99 | 0.62 | 0.57 | 3.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12816 | 1776 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 7XF2 | 33168 | 2024-01-17 | 2022-03-31 | 3.73 | 4.88 | 3.77 | 3.9 | 0.004 | 0.65 | 0.0 | 0.04 | 14.12 | 0.00 | 2.133 | 14.17 | 0.13 | 8.5 | 91.5 | 0.0 | -4.97 | 0.46 | 0.78 | 0.88 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6591 | 840 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 5BK4 | 9400 | 2024-01-19 | 2017-09-12 | 3.9 | 4.14 | — | 4.1 | 0.008 | 1.24 | 0.0 | 0.06 | 14.59 | 0.01 | 2.234 | 5.12 | 1.24 | 12.2 | 87.6 | 0.2 | -4.81 | 0.81 | 0.79 | 2.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62482 | 7636 | 22 | 120 | 8 | 0 | 0 | logfile |
✘ | 6Ji8 | 9833 | 2024-01-19 | 2019-02-20 | 3.6 | 3.80 | — | 3.7 | 0.010 | 1.26 | 8.0 | 0.06 | 11.98 | 0.01 | 2.196 | 8.60 | 1.03 | 10.5 | 89.0 | 0.5 | -4.77 | 0.73 | 0.77 | 2.30 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 115060 | 15024 | 16 | 0 | 4 | 0 | 0 | logfile |
✘ | 6o1D | 0586 | 2024-01-19 | 2019-02-19 | 3.395 | 3.57 | — | 3.5 | 0.010 | 0.95 | 1.0 | 0.05 | 28.02 | 0.01 | 2.317 | 2.17 | 0.00 | 3.4 | 96.6 | 0.0 | -4.72 | 0.79 | 0.87 | 4.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11982 | 761 | 10 | 290 | 0 | 0 | 0 | logfile |
✘ | 6ETi | 3953 | 2024-01-19 | 2017-10-26 | 3.1 | 3.22 | — | 3.2 | 0.010 | 1.09 | 0.0 | 0.06 | 11.80 | 0.01 | 2.316 | 3.13 | 0.30 | 5.3 | 94.5 | 0.2 | -4.70 | 0.73 | 0.88 | 4.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12442 | 1582 | 10 | 0 | 6 | 0 | 0 | logfile |
✘ | 6A69 | 6987 | 2024-01-18 | 2018-06-27 | 4.11 | 4.21 | — | 4.1 | 0.011 | 1.48 | 0.0 | 0.07 | 11.87 | 0.01 | 2.275 | 7.51 | 1.81 | 13.5 | 86.4 | 0.1 | -4.69 | 0.61 | 0.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7851 | 1038 | 2 | 0 | 1 | 0 | 0 | logfile |
✘ | 7YUH | 34107 | 2024-01-19 | 2022-08-17 | 3.7 | 3.99 | 3.78 | 3.8 | 0.010 | 1.18 | 0.0 | 0.07 | 10.78 | 0.01 | 2.253 | 6.61 | 0.15 | 10.9 | 88.9 | 0.1 | -4.68 | 0.80 | 0.77 | 1.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12432 | 1596 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 6XH7 | 22184 | 2024-01-19 | 2020-06-18 | 3.9 | 4.03 | — | 3.8 | 0.010 | 1.02 | 0.0 | 0.06 | 14.39 | 0.01 | 2.030 | 7.59 | 0.12 | 11.4 | 88.5 | 0.1 | -4.65 | 0.80 | 0.75 | 1.46 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 66008 | 3971 | 13 | 102 | 4 | 0 | 32688 | logfile |
✘ | 6JV2 | 9889 | 2024-01-18 | 2019-04-15 | 4.4 | 5.59 | — | 4.4 | 0.011 | 1.30 | 1.0 | 0.06 | 16.74 | 0.01 | 2.116 | 19.38 | 1.92 | 13.3 | 86.5 | 0.3 | -4.61 | 0.83 | 0.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 111080 | 14564 | 16 | 0 | 24 | 0 | 0 | logfile |
✘ | 8FWK | 29511 | 2024-01-18 | 2023-01-22 | 3.5 | 4.25 | 3.71 | 4.0 | 0.005 | 1.07 | 2.0 | 0.06 | 12.40 | 0.01 | 2.289 | 13.87 | 1.29 | 11.6 | 87.2 | 1.2 | -4.60 | 0.66 | 0.72 | 0.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9462 | 1194 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 7CH9 | 30372 | 2024-01-20 | 2020-07-05 | 3.5 | 3.92 | — | 3.8 | 0.005 | 0.82 | 0.0 | 0.04 | 18.11 | 0.00 | 2.032 | 18.63 | 10.34 | 9.6 | 90.4 | 0.0 | -4.56 | 0.69 | 0.78 | 0.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15978 | 2126 | 19 | 0 | 10 | 0 | 0 | logfile |
✘ | 6UGF | 20763 | 2024-01-20 | 2019-09-26 | 4.2 | 4.51 | — | 4.2 | 0.008 | 1.11 | 0.0 | 0.05 | 14.48 | 0.01 | 2.046 | 4.71 | 0.30 | 6.0 | 93.9 | 0.1 | -4.55 | 0.80 | 0.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13874 | 1862 | 12 | 0 | 9 | 0 | 0 | logfile |
✘ | 6VYH | 21460 | 2024-01-17 | 2020-02-26 | 3.0 | 3.13 | — | 3.1 | 0.013 | 1.11 | 1.0 | 0.06 | 14.40 | 0.01 | 1.922 | 11.42 | 2.00 | 8.8 | 90.0 | 1.2 | -4.54 | 0.66 | 0.81 | 2.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6093 | 860 | 5 | 0 | 2 | 1 | 0 | logfile |
✘ | 5LJV | 4062 | 2024-01-20 | 2016-07-21 | 3.64 | 3.75 | — | 3.7 | 0.030 | 2.85 | 85.0 | 0.16 | 18.81 | 0.02 | 2.070 | 21.28 | 11.82 | 7.4 | 89.7 | 2.9 | -4.53 | 0.71 | 0.84 | 2.85 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15000 | 1950 | 12 | 0 | 12 | 0 | 0 | logfile |
✘ | 6YW6 | 10959 | 2024-01-20 | 2020-04-29 | 4.2 | 4.50 | — | 4.3 | 0.007 | 1.15 | 2.0 | 0.07 | 11.08 | 0.01 | 2.164 | 11.25 | 0.73 | 6.2 | 93.5 | 0.3 | -4.53 | 0.85 | 0.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13823 | 1722 | 9 | 0 | 2 | 0 | 0 | logfile |