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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6UMM | 20820 | 2023-10-11 | 2019-10-09 | 3.7 | 6.74 | 4.15 | 4.0 | 0.006 | 0.79 | 0.0 | 0.04 | 13.23 | 0.00 | 2.203 | 11.97 | 0.17 | 4.8 | 95.2 | 0.0 | -2.07 | 0.55 | 0.56 | -0.10 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23658 | 3184 | 10 | 0 | 0 | 0 | 0 | logfile |
✘ | 7SGZ | 25121 | 2023-10-10 | 2021-10-07 | 3.17 | 3.52 | — | 3.5 | 0.002 | 0.53 | 0.0 | 0.04 | 15.13 | 0.00 | 2.128 | 7.19 | 0.04 | 5.5 | 94.5 | 0.0 | 0.10 | 0.68 | 0.74 | 1.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21055 | 2558 | 15 | 23 | 10 | 0 | 0 | logfile |
✘ | 7ZDB | 14640 | 2023-10-04 | 2022-03-29 | 3.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8803 | 1122 | 4 | 0 | 6 | 0 | 0 | logfile |
✘ | 8BDR | 15984 | 2023-10-17 | 2022-10-19 | 2.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36256 | 2173 | 8 | 43 | 3 | 0 | 17940 | logfile |
✘ | 8DGJ | 27427 | 2023-10-06 | 2022-06-23 | 4.02 | 4.32 | 4.05 | 4.1 | 0.007 | 1.24 | 2.0 | 0.06 | 14.25 | 0.01 | 2.213 | 11.07 | 0.13 | 7.4 | 92.3 | 0.3 | -2.71 | 0.69 | 0.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13574 | 1689 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 7W59 | 32317 | 2023-10-16 | 2021-11-29 | 3.6 | 3.96 | — | 3.6 | 0.013 | 1.67 | 139.0 | 0.11 | 14.72 | 0.01 | 1.346 | 16.10 | 3.80 | 5.6 | 93.7 | 0.7 | -2.96 | 0.66 | 0.63 | 1.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 92315 | 12086 | 56 | 416 | 18 | 0 | 0 | logfile |
✘ | 7W5A | 32319 | 2023-10-17 | 2021-11-29 | 3.6 | 3.89 | — | 3.6 | 0.012 | 1.64 | 129.0 | 0.11 | 14.83 | 0.01 | 1.346 | 18.76 | 3.67 | 6.0 | 93.3 | 0.8 | -2.96 | 0.66 | 0.62 | 1.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 96822 | 12633 | 61 | 416 | 19 | 0 | 0 | logfile |
✘ | 7W5B | 32321 | 2023-10-02 | 2021-11-29 | 4.3 | 4.80 | — | 4.3 | 0.012 | 1.56 | 60.0 | 0.10 | 14.18 | 0.01 | 1.346 | 16.34 | 2.51 | 5.8 | 93.5 | 0.7 | -3.06 | 0.65 | 0.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 106538 | 14610 | 62 | 416 | 19 | 0 | 0 | logfile |
✘ | 8SL0 | 40570 | 2023-10-02 | 2023-04-20 | 3.3 | 4.17 | 3.09 | 3.8 | 0.003 | 0.62 | 0.0 | 0.05 | 16.00 | 0.00 | 2.201 | 7.96 | 0.00 | 8.4 | 91.2 | 0.4 | -1.67 | 0.42 | 0.83 | 1.40 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 1737 | 228 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 7JMH | 22394 | 2023-10-08 | 2020-07-31 | 4.5 | 5.68 | — | 4.4 | 0.005 | 1.02 | 0.0 | 0.05 | 10.48 | 0.01 | 1.373 | 9.43 | 0.46 | 11.7 | 88.2 | 0.1 | -4.60 | 0.56 | 0.31 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 120756 | 13500 | 12 | 0 | 3608 | 0 | 0 | logfile |
✘ | 7oTo | 13063 | 2023-10-05 | 2021-06-10 | 3.4 | 2.27 | — | 1.3 | 0.013 | 1.84 | 0.0 | 0.11 | 15.17 | 0.01 | 1.799 | 3.86 | 0.00 | 1.5 | 98.5 | 0.0 | 2.59 | 0.76 | 0.74 | 1.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10333 | 1313 | 4 | 0 | 4 | 0 | 0 | logfile |
✘ | 6o90 | 0660 | 2023-10-14 | 2019-03-12 | 3.49 | 3.96 | — | 3.5 | 0.007 | 1.04 | 0.0 | 0.05 | 15.53 | 0.01 | 2.125 | 5.34 | 0.46 | 13.8 | 85.9 | 0.3 | -4.68 | 0.86 | 0.82 | 1.44 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 138532 | 5232 | 53 | 4547 | 4 | 0 | 0 | logfile |
✘ | 7ZAH | 14580 | 2023-10-10 | 2022-03-22 | 2.7 | 3.02 | 2.71 | 2.8 | 0.017 | 0.83 | 0.0 | 0.05 | 14.11 | 0.06 | 1.407 | 3.78 | 1.24 | 3.4 | 96.6 | 0.0 | -0.04 | 0.88 | 0.92 | 4.04 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 69366 | 4289 | 58 | 1596 | 70 | 379 | 0 | logfile |
✘ | 5N8N | 3600 | 2023-10-10 | 2017-02-23 | 3.28 | 3.38 | — | 3.4 | 0.019 | 1.34 | 0.0 | 0.12 | 11.08 | 0.01 | 1.755 | 21.54 | 0.81 | 4.4 | 95.6 | 0.0 | -2.91 | 0.40 | 0.82 | 2.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 70035 | 8895 | 30 | 0 | 0 | 0 | 0 | logfile |
✘ | 6L31 | 0816 | 2023-10-10 | 2019-10-07 | 4.18 | 4.92 | — | 4.8 | 0.007 | 1.26 | 7.0 | 0.07 | 16.23 | 0.01 | 1.738 | 16.77 | 2.27 | 11.7 | 88.0 | 0.3 | -4.45 | 0.38 | 0.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20905 | 2670 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 6RDZ | 4836 | 2023-10-02 | 2019-04-12 | 3.5 | 3.36 | — | 3.4 | 0.009 | 0.96 | 1.0 | 0.06 | 14.94 | 0.01 | 1.846 | 6.04 | 0.43 | 5.4 | 94.4 | 0.2 | -4.22 | 0.69 | 0.82 | 2.47 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 53720 | 7099 | 37 | 0 | 11 | 0 | 0 | logfile |
✘ | 7A6H | 11673 | 2023-10-19 | 2020-08-25 | 3.3 | 4.27 | 3.33 | 3.2 | 0.010 | 1.04 | 0.0 | 0.06 | 10.13 | 0.01 | 1.851 | 3.94 | 0.27 | 5.2 | 94.7 | 0.1 | -3.66 | 0.89 | 0.83 | 3.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40216 | 5057 | 23 | 0 | 9 | 0 | 0 | logfile |
✘ | 6ZZX | 11588 | 2023-10-04 | 2020-08-05 | 2.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 56369 | 4684 | 68 | 0 | 403 | 99 | 0 | logfile |
✘ | 6WUB | 21909 | 2023-10-16 | 2020-05-04 | 3.2 | 2.63 | — | 2.9 | 0.009 | 0.97 | 0.0 | 0.05 | 16.48 | 0.01 | 2.029 | 6.59 | 18.19 | 13.4 | 86.2 | 0.4 | -4.06 | 0.71 | 0.84 | 2.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 33949 | 1253 | 12 | 1121 | 0 | 0 | 0 | logfile |
✘ | 7TFJ | 25874 | 2023-10-10 | 2022-01-06 | 3.3 | 3.54 | — | 3.5 | 0.003 | 0.62 | 0.0 | 0.04 | 14.87 | 0.00 | 2.088 | 7.61 | 0.09 | 2.8 | 97.2 | 0.0 | 0.19 | 0.76 | 0.81 | 2.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20607 | 2486 | 15 | 42 | 9 | 0 | 0 | logfile |