Table showing results for October 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7VAV	31866	2023-10-14	2021-08-30	2.8	2.66	3.31	3.2	0.002	0.49	0.0	0.04	13.26	0.00	2.035	3.96	0.00	1.5	98.5	0.0	1.80	0.63	0.80	2.95	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29520	3787	14	0	4	0	0	logfile
✘	6PM5	20388	2023-10-07	2019-07-01	3.1	3.38	—	3.4	0.002	0.49	0.0	0.06	6.82	0.00	2.275	4.99	0.00	2.4	97.6	0.0	-4.42	0.52	0.78	3.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13975	1735	15	0	15	0	0	logfile
✘	8CXN	27061	2023-10-04	2022-05-22	2.9	3.69	2.99	3.3	0.002	0.50	3.0	0.05	11.36	0.00	1.974	5.44	0.06	3.5	96.4	0.1	0.27	0.78	0.71	1.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	57131	3678	9	0	30	0	27987	logfile
✘	6ZDG	11173	2023-10-14	2020-06-14	4.7	4.97	—	4.8	0.004	0.50	0.0	0.04	8.99	0.00	1.891	7.24	2.41	3.9	96.1	0.0	0.05	0.71	0.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	28548	1884	12	0	3	0	13995	logfile
✘	8SF0	40435	2023-10-10	2023-04-10	2.9	3.06	2.90	3.0	0.003	0.50	0.0	0.04	15.10	0.00	2.161	6.14	0.00	2.4	97.6	0.0	1.75	0.63	0.81	2.42	—	—	—	—	—	—	—	—	—	—	—	—	—	2.01	—	—	—	2.36	20664	2512	8	0	8	0	0	logfile
✘	8CYD	27075	2023-10-14	2022-05-23	2.6	3.24	2.62	3.0	0.002	0.51	0.0	0.04	12.52	0.01	1.930	6.47	0.32	4.9	94.7	0.4	0.04	0.77	0.79	2.24	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	28454	3663	6	0	0	0	0	logfile
✘	8DR6	27672	2023-10-20	2022-07-20	2.39	3.20	2.47	3.0	0.002	0.52	0.0	0.04	17.75	0.00	1.996	3.30	0.95	1.3	98.7	0.0	2.01	0.85	0.85	3.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	43630	2608	20	63	9	12	21632	logfile
✘	7LB5	23263	2023-10-11	2021-01-07	3.16	4.00	—	3.7	0.003	0.52	0.0	0.04	14.28	0.00	2.323	7.12	0.93	1.9	98.1	0.0	-1.95	0.87	0.84	2.57	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23616	3120	12	0	0	0	0	logfile
✘	7ZMD	14795	2023-10-13	2022-04-19	2.93	3.18	2.97	3.2	0.002	0.52	0.0	0.08	13.13	0.01	2.146	3.80	0.00	2.5	97.5	0.0	0.93	0.68	0.78	3.52	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18400	1191	2	0	0	0	9106	logfile
✘	6X36	22019	2023-10-19	2020-05-21	4.7	4.72	5.52	4.6	0.002	0.53	0.0	0.03	10.40	0.00	2.228	5.80	0.00	2.2	97.8	0.0	0.96	0.76	0.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	100164	13692	12	0	1376	0	0	logfile
✘	8D85	27247	2023-10-03	2022-06-07	3.81	4.26	4.04	4.2	0.003	0.53	0.0	0.04	11.75	0.00	2.357	4.77	0.00	4.1	95.8	0.1	-2.45	0.68	0.64	0.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7093	865	10	0	11	0	0	logfile
✘	7oE7	12861	2023-10-05	2021-05-01	3.73	3.95	3.97	3.7	0.002	0.53	0.0	0.04	14.33	0.00	2.084	3.86	0.00	6.8	93.2	0.0	-1.48	0.79	0.64	0.91	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11116	1382	1	0	2	0	0	logfile
✘	6P7N	20267	2023-10-18	2019-06-06	4.9	9.02	6.14	4.9	0.002	0.53	0.0	0.04	14.46	0.00	2.152	6.63	1.33	5.6	94.4	0.0	-3.30	0.81	0.58	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20356	2352	10	52	4	0	0	logfile
✘	7WoR	32656	2023-10-14	2022-01-22	3.7	2.87	—	3.2	0.003	0.53	0.0	0.05	9.19	0.01	2.216	8.02	5.34	7.7	92.2	0.1	-4.04	0.72	0.71	1.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29670	3799	9	0	23	0	0	logfile
✘	6RKV	4912	2023-10-07	2019-04-30	4.6	4.86	—	4.5	0.002	0.53	0.0	0.04	12.80	0.00	2.207	7.23	0.00	5.3	94.7	0.0	-1.73	0.87	0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15460	1784	8	64	0	0	0	logfile
✘	8DDW	27344	2023-10-12	2022-06-19	4.7	4.19	4.62	4.0	0.003	0.53	0.0	0.04	14.47	0.00	2.179	11.42	8.35	5.4	94.5	0.1	0.15	0.72	0.61	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25869	3198	10	0	68	0	0	logfile
✘	7Z17	14443	2023-10-18	2022-02-24	2.57	2.96	2.68	2.9	0.005	0.53	0.0	0.04	10.98	0.00	1.726	6.80	0.84	2.9	97.1	0.0	1.01	0.72	0.77	3.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	37592	2432	14	0	5	0	18669	logfile
✘	7SGZ	25121	2023-10-10	2021-10-07	3.17	3.52	—	3.5	0.002	0.53	0.0	0.04	15.13	0.00	2.128	7.19	0.04	5.5	94.5	0.0	0.10	0.68	0.74	1.35	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21055	2558	15	23	10	0	0	logfile
✘	8DUE	27719	2023-10-10	2022-07-27	2.9	2.30	3.00	3.0	0.003	0.53	0.0	0.04	12.98	0.00	1.926	12.84	3.40	5.9	94.1	0.0	0.26	0.55	0.66	1.93	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20904	2592	12	10	10	0	0	logfile
✘	7QFQ	13947	2023-10-05	2021-12-06	3.6	3.83	3.58	4.0	0.002	0.54	0.0	0.04	12.93	0.00	2.177	8.31	0.00	5.4	94.6	0.0	-0.70	0.65	0.70	1.50	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10659	1291	1	0	0	0	0	logfile

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