Table showing results for May 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7o85	12761	2023-05-12	2021-04-14	3.3	3.50	—	3.5	0.002	0.48	0.0	0.04	13.51	0.00	1.470	7.44	0.00	3.3	96.7	0.0	-0.25	0.71	0.75	2.90	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	28525	3843	28	0	14	0	0	logfile
✘	8GVC	34290	2023-05-03	2022-09-14	2.89	3.10	2.90	3.2	0.002	0.48	0.0	0.04	14.66	0.00	1.670	13.40	1.14	2.0	97.8	0.2	2.06	0.64	0.82	2.43	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8080	1022	4	0	2	0	0	logfile
✘	8HRB	34966	2023-05-16	2022-12-15	3.78	3.89	3.82	3.8	0.002	0.48	0.0	0.04	14.55	0.00	2.187	8.99	0.02	4.4	95.6	0.0	-0.91	0.78	0.79	1.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	96352	11778	28	102	8	0	0	logfile
✘	7VAV	31866	2023-05-12	2021-08-30	2.8	2.66	3.31	3.2	0.002	0.49	0.0	0.04	13.26	0.00	2.035	3.96	0.00	1.5	98.5	0.0	1.80	0.63	0.80	2.95	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29520	3787	14	0	4	0	0	logfile
✘	7P5W	13203	2023-05-16	2021-07-15	3.5	2.99	3.45	3.0	0.002	0.49	0.0	0.04	11.73	0.00	2.131	10.96	3.75	4.4	95.6	0.0	-0.37	0.72	0.70	1.03	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	41250	5028	12	0	0	0	0	logfile
✘	6PM5	20388	2023-05-06	2019-07-01	3.1	3.38	—	3.4	0.002	0.49	0.0	0.06	6.82	0.00	2.275	4.99	0.00	2.4	97.6	0.0	-4.42	0.52	0.78	3.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13975	1735	15	0	15	0	0	logfile
✘	8CXN	27061	2023-05-04	2022-05-22	2.9	3.69	2.99	3.3	0.002	0.50	3.0	0.05	11.36	0.00	1.974	5.44	0.06	3.5	96.4	0.1	0.27	0.78	0.71	1.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	57131	3678	9	0	30	0	27987	logfile
✘	7VXK	32182	2023-05-12	2021-11-12	3.7	4.06	—	3.9	0.002	0.50	0.0	0.04	7.67	0.00	2.235	7.48	0.00	3.8	96.1	0.1	-2.36	0.55	0.60	1.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30079	3814	4	0	0	0	0	logfile
✘	7VXD	32176	2023-05-12	2021-11-12	4.0	4.60	—	4.2	0.003	0.50	0.0	0.04	7.89	0.00	2.091	7.52	0.03	4.0	95.9	0.2	-2.30	0.70	0.65	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30194	3829	4	0	0	0	0	logfile
✘	6ZDG	11173	2023-05-12	2020-06-14	4.7	4.97	—	4.8	0.004	0.50	0.0	0.04	8.99	0.00	1.891	7.24	2.41	3.9	96.1	0.0	0.05	0.71	0.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	28548	1884	12	0	3	0	13995	logfile
✘	6WB0	21583	2023-05-03	2020-03-26	4.2	4.26	—	4.2	0.002	0.51	0.0	0.04	11.69	0.00	2.131	11.89	0.81	4.1	95.9	0.0	-4.46	0.79	0.74	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8518	948	4	77	0	0	0	logfile
✘	8CYD	27075	2023-05-12	2022-05-23	2.6	3.24	2.62	3.0	0.002	0.51	0.0	0.04	12.52	0.01	1.930	6.47	0.32	4.9	94.7	0.4	0.04	0.77	0.79	2.24	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	28454	3663	6	0	0	0	0	logfile
✘	7ZMD	14795	2023-05-11	2022-04-19	2.93	3.18	2.97	3.2	0.002	0.52	0.0	0.08	13.13	0.01	2.146	3.80	0.00	2.5	97.5	0.0	0.93	0.68	0.78	3.52	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18400	1191	2	0	0	0	9106	logfile
✘	7LB5	23263	2023-05-10	2021-01-07	3.16	4.00	—	3.7	0.003	0.52	0.0	0.04	14.28	0.00	2.323	7.12	0.93	1.9	98.1	0.0	-1.95	0.87	0.84	2.57	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23616	3120	12	0	0	0	0	logfile
✘	7R6K	24280	2023-05-08	2021-06-22	3.17	3.23	3.15	3.2	0.003	0.52	0.0	0.04	14.70	0.00	2.200	8.68	0.00	4.3	95.7	0.0	0.58	0.73	0.79	2.37	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20543	2153	16	152	0	0	0	logfile
✘	7Z17	14443	2023-05-15	2022-02-24	2.57	2.96	2.68	2.9	0.005	0.53	0.0	0.04	10.98	0.00	1.726	6.80	0.84	2.9	97.1	0.0	1.01	0.72	0.77	3.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	37592	2432	14	0	5	0	18669	logfile
✘	8D85	27247	2023-05-03	2022-06-07	3.81	4.26	4.04	4.2	0.003	0.53	0.0	0.04	11.75	0.00	2.357	4.77	0.00	4.1	95.8	0.1	-2.45	0.68	0.64	0.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7093	865	10	0	11	0	0	logfile
✘	6SD1	10145	2023-05-16	2019-07-26	2.6	2.74	2.55	2.7	0.003	0.53	0.0	0.04	12.42	0.00	2.149	8.45	0.00	4.3	95.7	0.0	-2.90	0.74	0.84	4.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	39369	4983	33	0	0	0	0	logfile
✘	7WoR	32656	2023-05-12	2022-01-22	3.7	2.87	—	3.2	0.003	0.53	0.0	0.05	9.19	0.01	2.216	8.02	5.34	7.7	92.2	0.1	-4.04	0.72	0.71	1.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29670	3799	9	0	23	0	0	logfile
✘	7R72	24290	2023-05-16	2021-06-24	3.07	3.12	3.04	3.1	0.003	0.53	0.0	0.04	13.98	0.00	2.007	6.67	0.41	3.7	96.3	0.0	0.87	0.73	0.84	3.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	39443	3040	25	700	1	0	0	logfile

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