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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7VAV | 31866 | 2023-10-14 | 2021-08-30 | 2.8 | 2.66 | 3.31 | 3.2 | 0.002 | 0.49 | 0.0 | 0.04 | 13.26 | 0.00 | 2.035 | 3.96 | 0.00 | 1.5 | 98.5 | 0.0 | 1.80 | 0.63 | 0.80 | 2.95 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29520 | 3787 | 14 | 0 | 4 | 0 | 0 | logfile |
✘ | 6PM5 | 20388 | 2023-10-07 | 2019-07-01 | 3.1 | 3.38 | — | 3.4 | 0.002 | 0.49 | 0.0 | 0.06 | 6.82 | 0.00 | 2.275 | 4.99 | 0.00 | 2.4 | 97.6 | 0.0 | -4.42 | 0.52 | 0.78 | 3.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13975 | 1735 | 15 | 0 | 15 | 0 | 0 | logfile |
✘ | 8CXN | 27061 | 2023-10-04 | 2022-05-22 | 2.9 | 3.69 | 2.99 | 3.3 | 0.002 | 0.50 | 3.0 | 0.05 | 11.36 | 0.00 | 1.974 | 5.44 | 0.06 | 3.5 | 96.4 | 0.1 | 0.27 | 0.78 | 0.71 | 1.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 57131 | 3678 | 9 | 0 | 30 | 0 | 27987 | logfile |
✘ | 6ZDG | 11173 | 2023-10-14 | 2020-06-14 | 4.7 | 4.97 | — | 4.8 | 0.004 | 0.50 | 0.0 | 0.04 | 8.99 | 0.00 | 1.891 | 7.24 | 2.41 | 3.9 | 96.1 | 0.0 | 0.05 | 0.71 | 0.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28548 | 1884 | 12 | 0 | 3 | 0 | 13995 | logfile |
✘ | 8SF0 | 40435 | 2023-10-10 | 2023-04-10 | 2.9 | 3.06 | 2.90 | 3.0 | 0.003 | 0.50 | 0.0 | 0.04 | 15.10 | 0.00 | 2.161 | 6.14 | 0.00 | 2.4 | 97.6 | 0.0 | 1.75 | 0.63 | 0.81 | 2.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | 2.01 | — | — | — | 2.36 | 20664 | 2512 | 8 | 0 | 8 | 0 | 0 | logfile |
✘ | 8CYD | 27075 | 2023-10-14 | 2022-05-23 | 2.6 | 3.24 | 2.62 | 3.0 | 0.002 | 0.51 | 0.0 | 0.04 | 12.52 | 0.01 | 1.930 | 6.47 | 0.32 | 4.9 | 94.7 | 0.4 | 0.04 | 0.77 | 0.79 | 2.24 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28454 | 3663 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 8DR6 | 27672 | 2023-10-20 | 2022-07-20 | 2.39 | 3.20 | 2.47 | 3.0 | 0.002 | 0.52 | 0.0 | 0.04 | 17.75 | 0.00 | 1.996 | 3.30 | 0.95 | 1.3 | 98.7 | 0.0 | 2.01 | 0.85 | 0.85 | 3.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 43630 | 2608 | 20 | 63 | 9 | 12 | 21632 | logfile |
✘ | 7LB5 | 23263 | 2023-10-11 | 2021-01-07 | 3.16 | 4.00 | — | 3.7 | 0.003 | 0.52 | 0.0 | 0.04 | 14.28 | 0.00 | 2.323 | 7.12 | 0.93 | 1.9 | 98.1 | 0.0 | -1.95 | 0.87 | 0.84 | 2.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23616 | 3120 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 7ZMD | 14795 | 2023-10-13 | 2022-04-19 | 2.93 | 3.18 | 2.97 | 3.2 | 0.002 | 0.52 | 0.0 | 0.08 | 13.13 | 0.01 | 2.146 | 3.80 | 0.00 | 2.5 | 97.5 | 0.0 | 0.93 | 0.68 | 0.78 | 3.52 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18400 | 1191 | 2 | 0 | 0 | 0 | 9106 | logfile |
✘ | 6X36 | 22019 | 2023-10-19 | 2020-05-21 | 4.7 | 4.72 | 5.52 | 4.6 | 0.002 | 0.53 | 0.0 | 0.03 | 10.40 | 0.00 | 2.228 | 5.80 | 0.00 | 2.2 | 97.8 | 0.0 | 0.96 | 0.76 | 0.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 100164 | 13692 | 12 | 0 | 1376 | 0 | 0 | logfile |
✘ | 8D85 | 27247 | 2023-10-03 | 2022-06-07 | 3.81 | 4.26 | 4.04 | 4.2 | 0.003 | 0.53 | 0.0 | 0.04 | 11.75 | 0.00 | 2.357 | 4.77 | 0.00 | 4.1 | 95.8 | 0.1 | -2.45 | 0.68 | 0.64 | 0.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7093 | 865 | 10 | 0 | 11 | 0 | 0 | logfile |
✘ | 7oE7 | 12861 | 2023-10-05 | 2021-05-01 | 3.73 | 3.95 | 3.97 | 3.7 | 0.002 | 0.53 | 0.0 | 0.04 | 14.33 | 0.00 | 2.084 | 3.86 | 0.00 | 6.8 | 93.2 | 0.0 | -1.48 | 0.79 | 0.64 | 0.91 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11116 | 1382 | 1 | 0 | 2 | 0 | 0 | logfile |
✘ | 6P7N | 20267 | 2023-10-18 | 2019-06-06 | 4.9 | 9.02 | 6.14 | 4.9 | 0.002 | 0.53 | 0.0 | 0.04 | 14.46 | 0.00 | 2.152 | 6.63 | 1.33 | 5.6 | 94.4 | 0.0 | -3.30 | 0.81 | 0.58 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20356 | 2352 | 10 | 52 | 4 | 0 | 0 | logfile |
✘ | 7WoR | 32656 | 2023-10-14 | 2022-01-22 | 3.7 | 2.87 | — | 3.2 | 0.003 | 0.53 | 0.0 | 0.05 | 9.19 | 0.01 | 2.216 | 8.02 | 5.34 | 7.7 | 92.2 | 0.1 | -4.04 | 0.72 | 0.71 | 1.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29670 | 3799 | 9 | 0 | 23 | 0 | 0 | logfile |
✘ | 6RKV | 4912 | 2023-10-07 | 2019-04-30 | 4.6 | 4.86 | — | 4.5 | 0.002 | 0.53 | 0.0 | 0.04 | 12.80 | 0.00 | 2.207 | 7.23 | 0.00 | 5.3 | 94.7 | 0.0 | -1.73 | 0.87 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15460 | 1784 | 8 | 64 | 0 | 0 | 0 | logfile |
✘ | 8DDW | 27344 | 2023-10-12 | 2022-06-19 | 4.7 | 4.19 | 4.62 | 4.0 | 0.003 | 0.53 | 0.0 | 0.04 | 14.47 | 0.00 | 2.179 | 11.42 | 8.35 | 5.4 | 94.5 | 0.1 | 0.15 | 0.72 | 0.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25869 | 3198 | 10 | 0 | 68 | 0 | 0 | logfile |
✘ | 7Z17 | 14443 | 2023-10-18 | 2022-02-24 | 2.57 | 2.96 | 2.68 | 2.9 | 0.005 | 0.53 | 0.0 | 0.04 | 10.98 | 0.00 | 1.726 | 6.80 | 0.84 | 2.9 | 97.1 | 0.0 | 1.01 | 0.72 | 0.77 | 3.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37592 | 2432 | 14 | 0 | 5 | 0 | 18669 | logfile |
✘ | 7SGZ | 25121 | 2023-10-10 | 2021-10-07 | 3.17 | 3.52 | — | 3.5 | 0.002 | 0.53 | 0.0 | 0.04 | 15.13 | 0.00 | 2.128 | 7.19 | 0.04 | 5.5 | 94.5 | 0.0 | 0.10 | 0.68 | 0.74 | 1.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21055 | 2558 | 15 | 23 | 10 | 0 | 0 | logfile |
✘ | 8DUE | 27719 | 2023-10-10 | 2022-07-27 | 2.9 | 2.30 | 3.00 | 3.0 | 0.003 | 0.53 | 0.0 | 0.04 | 12.98 | 0.00 | 1.926 | 12.84 | 3.40 | 5.9 | 94.1 | 0.0 | 0.26 | 0.55 | 0.66 | 1.93 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20904 | 2592 | 12 | 10 | 10 | 0 | 0 | logfile |
✘ | 7QFQ | 13947 | 2023-10-05 | 2021-12-06 | 3.6 | 3.83 | 3.58 | 4.0 | 0.002 | 0.54 | 0.0 | 0.04 | 12.93 | 0.00 | 2.177 | 8.31 | 0.00 | 5.4 | 94.6 | 0.0 | -0.70 | 0.65 | 0.70 | 1.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10659 | 1291 | 1 | 0 | 0 | 0 | 0 | logfile |