Table showing results for May 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7VXK	32182	2023-05-12	2021-11-12	3.7	4.06	—	3.9	0.002	0.50	0.0	0.04	7.67	0.00	2.235	7.48	0.00	3.8	96.1	0.1	-2.36	0.55	0.60	1.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30079	3814	4	0	0	0	0	logfile
✘	7EQ9	31256	2023-05-05	2021-04-30	3.3	3.70	3.42	3.6	0.002	0.47	0.0	0.04	15.65	0.00	2.267	3.70	0.00	3.3	96.7	0.0	1.85	0.60	0.53	0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	62520	7620	60	0	0	0	0	logfile
✘	6JSi	9882	2023-05-05	2019-04-08	4.7	4.70	—	4.6	0.007	1.48	0.0	0.06	15.33	0.01	2.231	10.68	2.42	23.2	72.3	4.5	-6.05	0.64	0.72	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	62820	5844	9	0	4044	0	0	logfile
✘	7DW9	30877	2023-05-04	2021-01-15	2.6	3.41	—	3.1	0.006	0.77	0.0	0.10	12.06	0.01	2.306	1.39	0.09	2.4	97.6	0.0	-0.01	0.73	0.87	4.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10105	1283	8	0	4	0	0	logfile
✘	8CPS	16784	2023-05-15	2023-03-03	1.82	1.69	1.90	1.7	0.003	0.66	0.0	0.05	15.42	0.01	2.116	2.82	0.00	1.0	99.0	0.0	2.28	0.75	0.81	8.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	36034	4152	72	0	38	1916	0	logfile
✘	8DDW	27344	2023-05-11	2022-06-19	4.7	4.19	4.62	4.0	0.003	0.53	0.0	0.04	14.47	0.00	2.179	11.42	8.35	5.4	94.5	0.1	0.15	0.72	0.61	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25869	3198	10	0	68	0	0	logfile
✘	7NHR	12338	2023-05-15	2021-02-11	2.85	3.06	—	3.0	0.006	0.70	0.0	0.05	11.67	0.00	1.796	9.28	0.02	3.6	96.4	0.0	-0.14	0.78	0.87	3.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	37011	4772	8	0	0	0	0	logfile
✘	7RGM	24452	2023-05-04	2021-07-15	2.8	2.86	—	2.9	0.014	1.70	0.0	0.08	15.75	0.01	2.328	1.94	3.63	5.2	94.6	0.3	-1.77	0.62	0.86	3.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	59928	3872	16	0	32	0	29736	logfile
✘	6RBD	4792	2023-05-13	2019-04-10	3.47	3.74	3.51	2.5	0.006	0.97	0.0	0.05	16.65	0.01	2.223	6.31	0.28	5.3	94.6	0.0	-3.01	0.90	0.81	1.85	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	81048	5450	35	1777	0	0	0	logfile
✘	6VL5	21230	2023-05-06	2020-01-22	4.5	4.57	4.20	4.4	0.019	1.72	0.0	0.10	10.23	0.01	2.242	0.64	0.20	1.2	98.8	0.0	0.88	0.79	0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15039	1719	42	0	105	0	0	logfile
✘	6QXM	4669	2023-05-15	2019-03-07	4.1	2.35	—	3.5	0.008	1.25	0.0	0.06	18.91	0.01	2.333	6.84	8.63	9.3	90.7	0.0	-4.78	0.68	0.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	37164	4704	12	0	0	0	0	logfile
✘	6VoL	21268	2023-05-16	2020-01-30	4.06	3.45	—	3.4	0.005	0.89	0.0	0.05	15.21	0.01	2.148	12.59	0.12	5.2	94.7	0.1	-3.18	0.74	0.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	38991	5165	32	0	7	0	0	logfile
✘	5VLZ	8709	2023-05-16	2017-04-26	4.4	4.55	—	4.4	0.006	0.89	0.0	0.00	5.88	0.00	2.272	2.04	0.00	6.1	93.9	0.0	-1.92	0.80	0.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	96897	24179	181	0	0	0	0	logfile
✘	6UKN	20807	2023-05-03	2019-10-05	3.65	3.85	—	3.8	0.005	0.83	0.0	0.05	13.77	0.01	2.280	4.10	0.47	7.7	92.3	0.0	-2.59	0.70	0.82	2.20	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4109	536	4	0	8	0	0	logfile
✘	7Nii	12360	2023-05-15	2021-02-12	2.88	3.06	—	3.0	0.006	0.69	0.0	0.04	11.05	0.00	1.216	12.41	0.00	3.4	96.6	0.1	-2.73	0.76	0.85	3.60	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	37235	4772	16	0	16	0	0	logfile
✘	7MYo	24082	2023-05-04	2021-05-21	2.92	3.27	2.93	3.3	0.005	0.89	0.0	0.05	15.08	0.01	2.225	9.92	0.59	5.9	94.1	0.0	-1.97	0.57	0.66	0.99	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10634	1278	2	0	1	0	0	logfile
✘	7BQT	30155	2023-05-16	2020-03-25	4.8	4.89	—	4.8	0.006	1.07	0.0	0.06	15.96	0.01	2.230	11.08	0.66	6.3	93.7	0.0	-4.15	0.57	0.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	39180	4860	12	0	0	0	0	logfile
✘	6Q6i	4468	2023-05-04	2018-12-11	3.7	3.77	—	3.8	0.009	1.22	0.0	0.06	17.03	0.01	2.244	8.63	1.89	16.7	83.0	0.3	-5.81	0.70	0.74	2.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	57200	7490	10	0	10	0	0	logfile
✘	7X93	33065	2023-05-05	2022-03-15	3.3	4.15	3.28	3.9	0.003	0.54	0.0	0.07	13.01	0.00	1.890	6.39	0.00	5.6	94.3	0.1	-0.89	0.81	0.82	2.89	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12742	828	8	0	8	0	6162	logfile
✘	8F0A	28754	2023-05-07	2022-11-02	2.6	3.77	2.61	3.4	0.031	1.77	0.0	0.13	9.86	0.01	2.388	0.56	0.00	0.8	99.2	0.0	0.72	0.68	0.66	4.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18060	1212	9	0	0	0	9189	logfile

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