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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7VXK | 32182 | 2023-05-12 | 2021-11-12 | 3.7 | 4.06 | — | 3.9 | 0.002 | 0.50 | 0.0 | 0.04 | 7.67 | 0.00 | 2.235 | 7.48 | 0.00 | 3.8 | 96.1 | 0.1 | -2.36 | 0.55 | 0.60 | 1.12 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30079 | 3814 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 7EQ9 | 31256 | 2023-05-05 | 2021-04-30 | 3.3 | 3.70 | 3.42 | 3.6 | 0.002 | 0.47 | 0.0 | 0.04 | 15.65 | 0.00 | 2.267 | 3.70 | 0.00 | 3.3 | 96.7 | 0.0 | 1.85 | 0.60 | 0.53 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62520 | 7620 | 60 | 0 | 0 | 0 | 0 | logfile |
✘ | 6JSi | 9882 | 2023-05-05 | 2019-04-08 | 4.7 | 4.70 | — | 4.6 | 0.007 | 1.48 | 0.0 | 0.06 | 15.33 | 0.01 | 2.231 | 10.68 | 2.42 | 23.2 | 72.3 | 4.5 | -6.05 | 0.64 | 0.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62820 | 5844 | 9 | 0 | 4044 | 0 | 0 | logfile |
✘ | 7DW9 | 30877 | 2023-05-04 | 2021-01-15 | 2.6 | 3.41 | — | 3.1 | 0.006 | 0.77 | 0.0 | 0.10 | 12.06 | 0.01 | 2.306 | 1.39 | 0.09 | 2.4 | 97.6 | 0.0 | -0.01 | 0.73 | 0.87 | 4.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10105 | 1283 | 8 | 0 | 4 | 0 | 0 | logfile |
✘ | 8CPS | 16784 | 2023-05-15 | 2023-03-03 | 1.82 | 1.69 | 1.90 | 1.7 | 0.003 | 0.66 | 0.0 | 0.05 | 15.42 | 0.01 | 2.116 | 2.82 | 0.00 | 1.0 | 99.0 | 0.0 | 2.28 | 0.75 | 0.81 | 8.54 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36034 | 4152 | 72 | 0 | 38 | 1916 | 0 | logfile |
✘ | 8DDW | 27344 | 2023-05-11 | 2022-06-19 | 4.7 | 4.19 | 4.62 | 4.0 | 0.003 | 0.53 | 0.0 | 0.04 | 14.47 | 0.00 | 2.179 | 11.42 | 8.35 | 5.4 | 94.5 | 0.1 | 0.15 | 0.72 | 0.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25869 | 3198 | 10 | 0 | 68 | 0 | 0 | logfile |
✘ | 7NHR | 12338 | 2023-05-15 | 2021-02-11 | 2.85 | 3.06 | — | 3.0 | 0.006 | 0.70 | 0.0 | 0.05 | 11.67 | 0.00 | 1.796 | 9.28 | 0.02 | 3.6 | 96.4 | 0.0 | -0.14 | 0.78 | 0.87 | 3.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37011 | 4772 | 8 | 0 | 0 | 0 | 0 | logfile |
✘ | 7RGM | 24452 | 2023-05-04 | 2021-07-15 | 2.8 | 2.86 | — | 2.9 | 0.014 | 1.70 | 0.0 | 0.08 | 15.75 | 0.01 | 2.328 | 1.94 | 3.63 | 5.2 | 94.6 | 0.3 | -1.77 | 0.62 | 0.86 | 3.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 59928 | 3872 | 16 | 0 | 32 | 0 | 29736 | logfile |
✘ | 6RBD | 4792 | 2023-05-13 | 2019-04-10 | 3.47 | 3.74 | 3.51 | 2.5 | 0.006 | 0.97 | 0.0 | 0.05 | 16.65 | 0.01 | 2.223 | 6.31 | 0.28 | 5.3 | 94.6 | 0.0 | -3.01 | 0.90 | 0.81 | 1.85 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 81048 | 5450 | 35 | 1777 | 0 | 0 | 0 | logfile |
✘ | 6VL5 | 21230 | 2023-05-06 | 2020-01-22 | 4.5 | 4.57 | 4.20 | 4.4 | 0.019 | 1.72 | 0.0 | 0.10 | 10.23 | 0.01 | 2.242 | 0.64 | 0.20 | 1.2 | 98.8 | 0.0 | 0.88 | 0.79 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15039 | 1719 | 42 | 0 | 105 | 0 | 0 | logfile |
✘ | 6QXM | 4669 | 2023-05-15 | 2019-03-07 | 4.1 | 2.35 | — | 3.5 | 0.008 | 1.25 | 0.0 | 0.06 | 18.91 | 0.01 | 2.333 | 6.84 | 8.63 | 9.3 | 90.7 | 0.0 | -4.78 | 0.68 | 0.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37164 | 4704 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 6VoL | 21268 | 2023-05-16 | 2020-01-30 | 4.06 | 3.45 | — | 3.4 | 0.005 | 0.89 | 0.0 | 0.05 | 15.21 | 0.01 | 2.148 | 12.59 | 0.12 | 5.2 | 94.7 | 0.1 | -3.18 | 0.74 | 0.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 38991 | 5165 | 32 | 0 | 7 | 0 | 0 | logfile |
✘ | 5VLZ | 8709 | 2023-05-16 | 2017-04-26 | 4.4 | 4.55 | — | 4.4 | 0.006 | 0.89 | 0.0 | 0.00 | 5.88 | 0.00 | 2.272 | 2.04 | 0.00 | 6.1 | 93.9 | 0.0 | -1.92 | 0.80 | 0.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 96897 | 24179 | 181 | 0 | 0 | 0 | 0 | logfile |
✘ | 6UKN | 20807 | 2023-05-03 | 2019-10-05 | 3.65 | 3.85 | — | 3.8 | 0.005 | 0.83 | 0.0 | 0.05 | 13.77 | 0.01 | 2.280 | 4.10 | 0.47 | 7.7 | 92.3 | 0.0 | -2.59 | 0.70 | 0.82 | 2.20 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4109 | 536 | 4 | 0 | 8 | 0 | 0 | logfile |
✘ | 7Nii | 12360 | 2023-05-15 | 2021-02-12 | 2.88 | 3.06 | — | 3.0 | 0.006 | 0.69 | 0.0 | 0.04 | 11.05 | 0.00 | 1.216 | 12.41 | 0.00 | 3.4 | 96.6 | 0.1 | -2.73 | 0.76 | 0.85 | 3.60 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37235 | 4772 | 16 | 0 | 16 | 0 | 0 | logfile |
✘ | 7MYo | 24082 | 2023-05-04 | 2021-05-21 | 2.92 | 3.27 | 2.93 | 3.3 | 0.005 | 0.89 | 0.0 | 0.05 | 15.08 | 0.01 | 2.225 | 9.92 | 0.59 | 5.9 | 94.1 | 0.0 | -1.97 | 0.57 | 0.66 | 0.99 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10634 | 1278 | 2 | 0 | 1 | 0 | 0 | logfile |
✘ | 7BQT | 30155 | 2023-05-16 | 2020-03-25 | 4.8 | 4.89 | — | 4.8 | 0.006 | 1.07 | 0.0 | 0.06 | 15.96 | 0.01 | 2.230 | 11.08 | 0.66 | 6.3 | 93.7 | 0.0 | -4.15 | 0.57 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 39180 | 4860 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 6Q6i | 4468 | 2023-05-04 | 2018-12-11 | 3.7 | 3.77 | — | 3.8 | 0.009 | 1.22 | 0.0 | 0.06 | 17.03 | 0.01 | 2.244 | 8.63 | 1.89 | 16.7 | 83.0 | 0.3 | -5.81 | 0.70 | 0.74 | 2.04 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 57200 | 7490 | 10 | 0 | 10 | 0 | 0 | logfile |
✘ | 7X93 | 33065 | 2023-05-05 | 2022-03-15 | 3.3 | 4.15 | 3.28 | 3.9 | 0.003 | 0.54 | 0.0 | 0.07 | 13.01 | 0.00 | 1.890 | 6.39 | 0.00 | 5.6 | 94.3 | 0.1 | -0.89 | 0.81 | 0.82 | 2.89 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12742 | 828 | 8 | 0 | 8 | 0 | 6162 | logfile |
✘ | 8F0A | 28754 | 2023-05-07 | 2022-11-02 | 2.6 | 3.77 | 2.61 | 3.4 | 0.031 | 1.77 | 0.0 | 0.13 | 9.86 | 0.01 | 2.388 | 0.56 | 0.00 | 0.8 | 99.2 | 0.0 | 0.72 | 0.68 | 0.66 | 4.15 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18060 | 1212 | 9 | 0 | 0 | 0 | 9189 | logfile |