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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 5GW5 | 9541 | 2023-03-15 | 2016-09-08 | 4.6 | 4.75 | — | 4.7 | 0.002 | 0.58 | 0.0 | 0.04 | 7.37 | 0.00 | 2.136 | 6.87 | 0.01 | 4.5 | 95.4 | 0.1 | -3.73 | 0.74 | 0.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64544 | 8446 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 6PM5 | 20388 | 2023-03-15 | 2019-07-01 | 3.1 | 3.38 | — | 3.4 | 0.002 | 0.49 | 0.0 | 0.06 | 6.82 | 0.00 | 2.275 | 4.99 | 0.00 | 2.4 | 97.6 | 0.0 | -4.42 | 0.52 | 0.78 | 3.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13975 | 1735 | 15 | 0 | 15 | 0 | 0 | logfile |
✘ | 7P13 | 13154 | 2023-03-15 | 2021-07-01 | 2.29 | 1.96 | 2.28 | 1.7 | 0.016 | 1.06 | 0.0 | 0.07 | 14.07 | 0.01 | 2.430 | 5.24 | 0.00 | 3.3 | 96.7 | 0.0 | 2.06 | 0.82 | 0.87 | 4.22 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13727 | 1743 | 7 | 0 | 0 | 0 | 154 | logfile |
✘ | 7K10 | 22619 | 2023-03-13 | 2020-09-06 | 3.3 | 3.44 | — | 3.4 | 0.006 | 0.98 | 0.0 | 0.05 | 15.43 | 0.01 | 2.300 | 4.19 | 0.37 | 10.6 | 89.3 | 0.1 | -5.28 | 0.72 | 0.77 | 2.12 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10037 | 1259 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 7RKM | 24500 | 2023-03-13 | 2021-07-22 | 3.5 | 3.62 | — | 3.5 | 0.005 | 0.97 | 0.0 | 0.06 | 12.31 | 0.00 | 2.181 | 7.47 | 0.00 | 3.7 | 96.3 | 0.0 | -1.13 | 0.74 | 0.83 | 3.32 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9491 | 1201 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 6TM5 | 10518 | 2023-03-14 | 2019-12-03 | 3.9 | 4.07 | — | 4.1 | 0.010 | 1.11 | 0.0 | 0.05 | 15.92 | 0.01 | 1.619 | 28.83 | 0.76 | 11.9 | 87.8 | 0.3 | -4.46 | 0.36 | 0.48 | 0.44 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 63885 | 8117 | 23 | 0 | 3 | 0 | 0 | logfile |
✘ | 6Q6i | 4468 | 2023-03-13 | 2018-12-11 | 3.7 | 3.77 | — | 3.8 | 0.009 | 1.22 | 0.0 | 0.06 | 17.03 | 0.01 | 2.244 | 8.63 | 1.89 | 16.7 | 83.0 | 0.3 | -5.81 | 0.70 | 0.74 | 2.04 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 57200 | 7490 | 10 | 0 | 10 | 0 | 0 | logfile |
✘ | 7MYo | 24082 | 2023-03-14 | 2021-05-21 | 2.92 | 3.27 | 2.93 | 3.3 | 0.005 | 0.89 | 0.0 | 0.05 | 15.08 | 0.01 | 2.225 | 9.92 | 0.59 | 5.9 | 94.1 | 0.0 | -1.97 | 0.57 | 0.66 | 0.99 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10634 | 1278 | 2 | 0 | 1 | 0 | 0 | logfile |
✘ | 7KoE | 22973 | 2023-03-16 | 2020-11-08 | 2.9 | 3.08 | — | 3.0 | 0.013 | 1.42 | 0.0 | 0.09 | 15.93 | 0.02 | 1.984 | 10.90 | 2.18 | 6.7 | 93.2 | 0.1 | -4.90 | 0.76 | 0.83 | 3.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18348 | 2296 | 16 | 0 | 12 | 0 | 0 | logfile |
✘ | 7P14 | 13155 | 2023-03-12 | 2021-07-01 | 3.66 | 3.82 | 3.50 | 3.8 | 0.004 | 0.64 | 0.0 | 0.04 | 16.56 | 0.00 | 2.295 | 7.45 | 0.00 | 2.7 | 97.3 | 0.0 | 1.11 | 0.60 | 0.78 | 2.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3796 | 454 | 3 | 0 | 3 | 0 | 0 | logfile |
✘ | 6ToA | 10542 | 2023-03-17 | 2019-12-11 | 3.47 | 3.57 | — | 3.5 | 0.009 | 1.24 | 0.0 | 0.07 | 10.85 | 0.01 | 2.110 | 11.06 | 0.54 | 11.8 | 88.0 | 0.1 | -5.85 | 0.77 | 0.86 | 3.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 67896 | 9006 | 42 | 0 | 0 | 0 | 0 | logfile |
✘ | 6Bo4 | 7118 | 2023-03-16 | 2017-11-18 | 4.0 | 4.00 | — | 3.8 | 0.008 | 1.32 | 0.0 | 0.06 | 11.91 | 0.01 | 2.208 | 16.53 | 0.75 | 9.5 | 90.3 | 0.2 | -4.58 | 0.78 | 0.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18432 | 2500 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 6RoH | 32512 | 2023-03-14 | 2019-05-13 | 2.8 | 2.20 | — | 40.0 | 0.006 | 0.89 | 0.0 | 0.05 | 13.56 | 0.01 | 1.709 | 4.00 | 0.23 | 3.4 | 96.6 | 0.0 | -4.73 | 0.04 | 0.00 | 0.30 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11758 | 1449 | 7 | 0 | 9 | 2 | 0 | logfile |
✘ | 7KSL | 23019 | 2023-03-16 | 2020-11-23 | 3.5 | 2.75 | 3.35 | 3.3 | 0.007 | 0.78 | 0.0 | 0.05 | 14.07 | 0.01 | 2.133 | 8.85 | 0.12 | 8.7 | 91.3 | 0.0 | -3.52 | 0.73 | 0.81 | 2.24 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18306 | 2551 | 10 | 0 | 5 | 0 | 0 | logfile |
✘ | 7PKN | 13473 | 2023-03-17 | 2021-08-25 | 3.2 | 3.78 | — | 3.4 | 0.002 | 0.55 | 0.0 | 0.04 | 12.63 | 0.00 | 2.106 | 6.10 | 0.00 | 2.6 | 97.4 | 0.0 | 2.14 | 0.77 | 0.75 | 1.23 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18616 | 2310 | 12 | 0 | 0 | 1 | 0 | logfile |
✘ | 6JSi | 9882 | 2023-03-14 | 2019-04-08 | 4.7 | 4.70 | — | 4.6 | 0.007 | 1.48 | 0.0 | 0.06 | 15.33 | 0.01 | 2.231 | 10.68 | 2.42 | 23.2 | 72.3 | 4.5 | -6.05 | 0.64 | 0.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62820 | 5844 | 9 | 0 | 4044 | 0 | 0 | logfile |
✘ | 5oAF | 3773 | 2023-03-17 | 2017-06-21 | 4.06 | 4.15 | — | 4.1 | 0.001 | 0.47 | 0.0 | 0.04 | 9.13 | 0.00 | 2.165 | 12.39 | 0.28 | 2.4 | 97.6 | 0.0 | -2.75 | 0.69 | 0.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19748 | 2538 | 12 | 0 | 6 | 0 | 0 | logfile |
✘ | 6N9X | 0382 | 2023-03-17 | 2018-12-04 | 4.1 | 4.18 | — | 4.1 | 0.006 | 0.84 | 0.0 | 0.05 | 13.69 | 0.02 | 2.131 | 3.65 | 0.60 | 3.9 | 96.1 | 0.0 | -4.04 | 0.74 | 0.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19658 | 2419 | 14 | 31 | 12 | 0 | 0 | logfile |
✘ | 7M74 | 23708 | 2023-03-15 | 2021-03-26 | 3.93 | 4.17 | — | 3.1 | 0.003 | 0.73 | 0.0 | 0.11 | 9.61 | 0.01 | 1.330 | 3.92 | 0.00 | 3.0 | 97.0 | 0.0 | -3.25 | 0.91 | 0.78 | 1.54 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13457 | 1699 | 10 | 0 | 6 | 0 | 0 | logfile |
✘ | 6UPK | 20840 | 2023-03-15 | 2019-10-17 | 4.9 | 7.69 | 6.08 | 7.1 | 0.005 | 0.94 | 0.0 | 0.05 | 20.35 | 0.01 | 1.570 | 20.39 | 0.00 | 7.2 | 92.8 | 0.0 | -3.94 | 0.89 | 0.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13861 | 1314 | 10 | 144 | 54 | 0 | 0 | logfile |