Table showing results for May 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7TF7	25864	2023-05-16	2022-01-06	2.13	2.24	—	2.2	0.004	0.61	0.0	0.04	15.42	0.00	2.187	5.57	1.43	2.5	97.4	0.1	1.01	0.47	0.70	5.40	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	39976	4980	12	0	0	0	0	logfile
✘	5GMK	9525	2023-05-11	2016-07-14	3.4	3.52	—	3.5	0.012	1.25	16.0	0.07	13.99	0.01	1.378	19.35	2.77	7.7	91.2	1.0	-3.71	0.47	0.53	1.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	75273	8026	51	404	981	0	0	logfile
✘	6oo4	20145	2023-05-08	2019-04-22	3.3	3.45	3.23	3.5	0.013	1.10	0.0	0.06	9.30	0.01	1.858	2.96	0.00	3.4	96.6	0.0	-2.86	0.47	0.64	4.17	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18452	2440	8	0	4	0	0	logfile
✘	8A01	15044	2023-05-03	2022-05-26	3.2	3.25	3.20	3.2	0.002	0.44	0.0	0.05	14.81	0.00	2.289	4.13	0.00	2.0	98.0	0.0	0.02	0.48	0.86	2.87	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5511	717	3	0	0	0	0	logfile
✘	8DCX	27330	2023-05-04	2022-06-17	2.8	3.32	3.33	3.4	0.003	0.58	0.0	0.04	14.71	0.00	2.195	13.47	0.00	5.4	94.6	0.1	-0.04	0.48	0.60	0.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9627	1166	2	0	0	0	0	logfile
✘	8DJK	27460	2023-05-03	2022-06-30	3.33	3.77	3.32	3.7	0.029	1.52	1.0	1.03	15.27	0.01	1.327	7.25	0.82	5.0	95.0	0.0	-1.84	0.48	0.73	2.65	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7091	870	7	0	8	0	0	logfile
✘	6PVM	20493	2023-05-09	2019-07-21	4.5	4.24	—	4.3	0.006	1.18	0.0	0.06	12.60	0.01	2.154	6.75	0.87	15.6	84.1	0.3	-6.13	0.49	0.74	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21006	2576	6	0	2	0	0	logfile
✘	6VRL	21370	2023-05-03	2020-02-07	3.8	3.98	4.22	3.9	0.003	0.61	0.0	0.04	14.10	0.00	2.159	10.65	0.00	4.9	95.1	0.0	-3.12	0.49	0.69	1.43	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6141	764	4	0	4	0	0	logfile
✘	5WVE	6690	2023-05-12	2016-12-24	4.4	4.90	—	5.1	0.008	1.34	7.0	0.08	19.34	0.01	1.493	69.05	16.86	7.1	89.5	3.4	-0.75	0.49	0.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	78605	9766	39	0	21	0	0	logfile
✘	8DJM	27461	2023-05-03	2022-07-01	3.23	3.66	3.31	3.6	0.029	1.53	2.0	1.04	15.98	0.00	1.844	8.23	0.82	3.7	96.3	0.0	-2.26	0.49	0.75	3.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7032	862	7	0	8	0	0	logfile
✘	5UCY	8539	2023-05-10	2016-12-22	4.6	4.99	—	4.6	0.011	1.21	3.0	0.06	13.21	0.01	0.244	89.25	0.68	11.3	88.3	0.5	-4.47	0.50	0.32	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24990	2610	12	3	6	0	4452	logfile
✘	7QBA	13885	2023-05-12	2021-11-18	3.78	3.61	—	3.7	0.006	1.07	18.0	0.06	13.93	0.01	1.363	16.56	0.72	5.6	94.1	0.4	-1.57	0.50	0.82	2.57	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20986	2694	11	0	6	0	0	logfile
✘	7PiJ	13438	2023-05-03	2021-08-20	3.78	4.14	—	4.1	0.015	1.17	0.0	0.05	13.54	0.01	1.166	13.45	0.11	10.6	89.3	0.1	-3.26	0.50	0.53	1.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8194	1068	8	0	0	16	0	logfile
✘	6MN7	9166	2023-05-09	2018-10-01	4.8	5.01	—	5.0	0.016	2.23	12.0	0.12	10.62	0.02	1.395	35.74	0.57	8.6	89.4	2.0	-2.34	0.50	0.19	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21447	2418	66	0	192	0	0	logfile
✘	8DGC	27421	2023-05-13	2022-06-23	3.4	3.02	3.70	3.0	0.006	0.96	2.0	0.05	13.60	0.01	1.993	1.47	0.14	1.9	98.1	0.0	-0.33	0.51	0.52	1.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	81600	10216	16	0	16	0	0	logfile
✘	6X1A	21994	2023-05-05	2020-05-18	2.5	1.99	2.50	2.6	0.006	0.93	0.0	0.07	15.41	0.00	2.140	14.37	3.79	3.9	96.1	0.0	-3.15	0.51	0.71	2.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10140	1262	5	0	1	23	0	logfile
✘	7KH1	22873	2023-05-16	2020-10-19	3.2	3.17	—	3.5	0.010	0.97	0.0	0.05	14.82	0.01	2.008	25.57	0.66	11.2	88.8	0.0	-2.62	0.51	0.81	2.50	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	97344	12588	48	0	0	0	0	logfile
✘	6AHD	9624	2023-05-13	2018-08-17	3.8	3.84	—	3.7	0.011	1.38	2.0	0.12	13.79	0.01	1.805	14.26	2.52	7.4	91.7	0.9	-3.55	0.51	0.52	2.11	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	85302	14082	65	531	3	0	0	logfile
✘	7D74	30601	2023-05-15	2020-10-02	3.1	2.42	—	3.0	0.009	1.38	1.0	0.08	19.73	0.01	1.922	10.36	8.87	4.8	94.8	0.4	-2.46	0.51	0.65	2.35	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	35353	4503	24	0	12	0	0	logfile
✘	7SWP	25478	2023-05-03	2021-11-20	3.8	3.74	—	4.0	0.008	0.92	0.0	0.05	12.87	0.01	2.202	40.14	0.00	12.1	87.9	0.0	-2.17	0.51	0.71	1.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3372	436	3	0	0	0	0	logfile

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