Table showing results for March 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7A92	11682	2023-03-13	2020-09-01	4.2	4.58	4.29	4.2	0.007	0.84	0.0	0.06	14.53	0.01	2.222	3.92	1.19	5.2	94.7	0.1	-2.44	0.77	0.64	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10040	1231	5	0	10	0	0	logfile
✘	7V69	31739	2023-03-14	2021-08-20	3.4	2.24	—	2.0	0.003	0.65	0.0	0.04	12.64	0.00	2.096	13.28	0.00	2.9	97.1	0.0	-2.02	0.68	0.64	2.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8539	1122	5	0	0	0	0	logfile
✘	7oE7	12861	2023-03-14	2021-05-01	3.73	3.95	3.97	3.7	0.002	0.53	0.0	0.04	14.33	0.00	2.084	3.86	0.00	6.8	93.2	0.0	-1.48	0.79	0.64	0.91	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11116	1382	1	0	2	0	0	logfile
✘	6oo4	20145	2023-03-16	2019-04-22	3.3	3.45	3.23	3.5	0.013	1.10	0.0	0.06	9.30	0.01	1.858	2.96	0.00	3.4	96.6	0.0	-2.86	0.47	0.64	4.17	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18452	2440	8	0	4	0	0	logfile
✘	5GW5	9541	2023-03-15	2016-09-08	4.6	4.75	—	4.7	0.002	0.58	0.0	0.04	7.37	0.00	2.136	6.87	0.01	4.5	95.4	0.1	-3.73	0.74	0.64	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64544	8446	16	0	0	0	0	logfile
✘	3J8H	2807	2023-03-13	2014-10-26	3.8	3.95	—	3.8	0.006	1.31	4.0	0.05	10.89	0.01	1.488	33.49	2.47	5.3	92.8	1.9	-2.06	0.65	0.64	1.52	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	111160	12796	12	0	2276	0	0	logfile
✘	7WF7	32461	2023-03-12	2021-12-26	3.4	3.19	—	3.2	0.004	0.83	0.0	0.05	13.56	0.00	2.288	2.88	0.00	4.4	95.6	0.0	-1.14	0.55	0.64	1.44	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8136	1034	6	0	1	0	0	logfile
✘	7MYo	24082	2023-03-14	2021-05-21	2.92	3.27	2.93	3.3	0.005	0.89	0.0	0.05	15.08	0.01	2.225	9.92	0.59	5.9	94.1	0.0	-1.97	0.57	0.66	0.99	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10634	1278	2	0	1	0	0	logfile
✘	8F0A	28754	2023-03-16	2022-11-02	2.6	3.77	2.61	3.4	0.031	1.77	0.0	0.13	9.86	0.01	2.388	0.56	0.00	0.8	99.2	0.0	0.72	0.68	0.66	4.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18060	1212	9	0	0	0	9189	logfile
✘	5GW4	9540	2023-03-15	2016-09-08	4.7	4.89	—	4.8	0.001	0.42	0.0	0.04	7.26	0.00	2.187	6.49	0.00	4.3	95.6	0.1	-3.58	0.77	0.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64544	8446	16	0	0	0	0	logfile
✘	6WJV	21701	2023-03-17	2020-04-14	3.5	3.60	—	3.5	0.009	1.66	1.0	0.08	15.51	0.01	1.466	5.97	0.05	7.2	92.8	0.0	-5.50	0.75	0.66	0.87	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19593	2567	5	0	1	0	0	logfile
✘	5oAF	3773	2023-03-17	2017-06-21	4.06	4.15	—	4.1	0.001	0.47	0.0	0.04	9.13	0.00	2.165	12.39	0.28	2.4	97.6	0.0	-2.75	0.69	0.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19748	2538	12	0	6	0	0	logfile
✘	5MPA	3535	2023-03-17	2016-12-16	4.5	4.58	—	4.5	0.026	2.51	100.0	0.13	15.51	0.02	1.354	4.50	1.95	7.7	90.6	1.8	-4.17	0.58	0.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	67883	8674	40	0	12	0	0	logfile
✘	6oAB	20000	2023-03-17	2019-03-15	3.6	3.87	3.73	3.8	0.006	1.07	1.0	0.05	16.24	0.01	1.245	9.38	0.34	7.7	92.1	0.2	-5.58	0.68	0.68	0.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19690	2537	11	0	18	0	0	logfile
✘	8HGo	34744	2023-03-13	2022-11-15	3.31	2.35	3.32	2.2	0.004	0.71	0.0	0.05	7.94	0.01	2.284	4.45	0.00	8.0	91.8	0.2	-3.74	0.71	0.68	2.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9227	1178	6	0	8	0	0	logfile
✘	6BQW	7134	2023-03-17	2017-11-28	4.2	4.44	—	4.3	0.016	1.28	0.0	0.07	13.45	0.01	2.307	8.25	0.00	10.3	83.9	5.9	-3.51	0.73	0.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19953	2475	18	0	9	0	0	logfile
✘	6XXD	10647	2023-03-15	2020-01-27	3.22	2.31	—	3.1	0.007	1.05	0.0	0.06	11.45	0.00	2.647	2.40	0.00	5.7	94.3	0.0	-2.51	0.70	0.68	2.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14896	2000	16	0	0	0	0	logfile
✘	6oo5	20146	2023-03-16	2019-04-22	4.2	4.30	4.10	4.2	0.012	1.05	0.0	0.06	9.23	0.01	2.246	3.18	0.00	4.5	95.5	0.0	-2.74	0.65	0.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17548	2440	8	0	4	0	0	logfile
✘	7RYE	24735	2023-03-17	2021-08-25	3.9	4.10	—	4.0	0.003	0.65	0.0	0.04	14.57	0.00	2.090	14.13	0.00	3.7	96.3	0.0	1.07	0.76	0.69	-0.18	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19708	2535	24	0	0	0	0	logfile
✘	6VRL	21370	2023-03-12	2020-02-07	3.8	3.98	4.22	3.9	0.003	0.61	0.0	0.04	14.10	0.00	2.159	10.65	0.00	4.9	95.1	0.0	-3.12	0.49	0.69	1.43	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6141	764	4	0	4	0	0	logfile

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