Table showing results for May 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6RQT	4985	2023-05-16	2019-05-16	4.0	4.06	—	4.1	0.007	1.20	2.0	0.07	13.82	0.01	1.938	13.90	1.35	14.8	85.0	0.1	-5.39	0.64	0.60	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	39820	4915	22	32	6	0	0	logfile
✘	7WKK	32566	2023-05-15	2022-01-10	4.2	4.30	—	3.9	0.006	0.63	0.0	0.04	4.94	0.00	2.138	2.83	0.00	4.7	95.2	0.1	-2.36	0.46	0.60	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	92821	18728	30	0	0	0	0	logfile
✘	6JPA	9868	2023-05-09	2019-03-26	2.6	2.76	—	2.8	0.013	1.51	3.0	0.12	17.16	0.01	1.921	38.35	11.40	8.8	89.5	1.7	-3.83	0.54	0.61	1.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22232	2694	14	0	42	0	0	logfile
✘	8HK1	34841	2023-05-12	2022-11-24	2.7	2.81	2.75	2.9	0.005	0.89	3.0	0.13	16.22	0.01	1.262	10.95	5.96	3.6	96.3	0.1	-2.81	0.56	0.61	2.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30236	4205	24	148	5	0	0	logfile
✘	5ooM	3843	2023-05-14	2017-08-08	3.03	5.11	3.03	4.9	0.016	1.29	1.0	0.07	14.23	0.01	1.296	6.33	0.94	5.4	94.5	0.1	-3.55	0.77	0.61	0.74	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	90739	8105	61	1148	80	0	0	logfile
✘	7SiD	25141	2023-05-17	2021-10-13	2.53	2.17	—	2.7	0.003	0.53	0.0	0.04	14.33	0.01	2.072	4.12	0.77	1.7	98.3	0.0	2.49	0.61	0.61	1.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	44650	5566	6	0	4	0	0	logfile
✘	8E01	27812	2023-05-15	2022-08-08	3.4	3.80	3.71	3.8	0.002	0.56	0.0	0.04	17.85	0.00	2.278	9.40	0.41	2.0	98.0	0.0	-0.28	0.63	0.61	0.23	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	91080	12060	60	0	0	0	0	logfile
✘	7WYB	32890	2023-05-04	2022-02-15	2.97	2.33	—	2.1	0.005	0.80	0.0	0.05	12.35	0.00	2.176	5.06	0.00	7.0	93.0	0.0	-1.33	0.66	0.61	1.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8757	1115	5	0	0	0	0	logfile
✘	7DN3	30779	2023-05-15	2020-12-08	3.5	4.31	—	3.8	0.012	1.43	31.0	0.09	16.92	0.01	1.961	21.63	4.73	9.9	89.4	0.7	-4.77	0.75	0.61	0.19	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	36856	4521	26	45	8	0	0	logfile
✘	8DDW	27344	2023-05-11	2022-06-19	4.7	4.19	4.62	4.0	0.003	0.53	0.0	0.04	14.47	0.00	2.179	11.42	8.35	5.4	94.5	0.1	0.15	0.72	0.61	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25869	3198	10	0	68	0	0	logfile
✘	5A0Q	2981	2023-05-17	2015-04-22	3.5	3.34	—	3.3	0.019	2.22	14.0	0.11	15.42	0.02	0.702	33.75	1.99	4.5	95.1	0.4	-3.18	0.60	0.61	1.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	43448	5582	34	0	6	0	0	logfile
✘	7SYP	25536	2023-05-12	2021-11-25	4.0	3.37	3.92	3.3	0.003	0.83	4.0	0.04	15.65	0.01	2.250	5.48	0.05	4.7	95.3	0.0	-2.44	0.65	0.62	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	80436	4896	39	1941	2	0	0	logfile
✘	7W5A	32319	2023-05-16	2021-11-29	3.6	3.89	—	3.6	0.012	1.64	129.0	0.11	14.83	0.01	1.346	18.76	3.67	6.0	93.3	0.8	-2.96	0.66	0.62	1.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	96822	12633	61	416	19	0	0	logfile
✘	6QoZ	4610	2023-05-08	2019-02-13	3.4	3.65	3.13	3.5	0.011	1.46	4.0	0.09	15.40	0.01	1.243	4.20	5.13	6.0	93.1	0.9	-3.28	0.40	0.62	0.09	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17987	2307	9	0	0	0	0	logfile
✘	6JP5	9866	2023-05-09	2019-03-25	2.9	3.03	—	3.1	0.016	1.54	4.0	0.13	14.11	0.01	1.921	28.83	6.11	7.7	91.7	0.6	-3.65	0.56	0.62	2.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22068	2694	14	0	39	0	0	logfile
✘	7PKS	13479	2023-05-17	2021-08-26	3.6	4.27	3.31	2.8	0.004	0.78	0.0	0.05	14.44	0.01	1.638	5.38	0.00	4.0	95.9	0.0	-0.87	0.76	0.62	1.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	101147	13139	41	74	118	0	0	logfile
✘	6iGM	9668	2023-05-10	2018-09-25	4.0	4.14	—	4.1	0.004	0.88	0.0	0.05	10.13	0.01	1.054	20.78	2.70	7.3	91.6	1.1	-4.30	0.70	0.62	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24257	3054	9	0	62	0	0	logfile
✘	6RLB	4918	2023-05-08	2019-05-01	4.5	4.85	4.49	4.3	0.007	0.95	0.0	0.06	4.70	0.00	2.082	0.71	0.00	4.0	95.9	0.0	-1.08	0.80	0.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20407	4122	14	0	0	0	0	logfile
✘	6J6N	0691	2023-05-12	2019-01-15	3.86	3.99	—	3.8	0.008	1.02	1.0	0.09	14.52	0.01	1.820	15.60	2.51	5.1	94.2	0.8	-3.41	0.60	0.63	1.26	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	78937	8982	47	544	14	0	0	logfile
✘	7CWL	30482	2023-05-13	2020-08-29	3.8	4.03	—	3.8	0.009	1.09	4.0	0.07	10.20	0.01	1.462	24.00	1.07	7.6	92.0	0.4	-3.59	0.71	0.63	1.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30638	3900	12	0	27	0	0	logfile

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