Table showing results for May 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8FWJ	29506	2023-05-15	2023-01-22	2.7	2.88	—	3.0	0.003	0.72	0.0	0.04	14.77	0.01	1.976	31.45	3.45	2.7	97.3	0.0	0.43	0.59	0.69	1.40	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	60204	7644	48	0	48	48	24	logfile
✘	7NVR	12610	2023-05-15	2021-03-15	4.5	4.38	4.40	3.5	0.003	0.55	0.0	0.04	15.01	0.00	1.807	8.62	0.01	3.9	96.0	0.0	0.72	0.75	0.57	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	96126	11548	71	128	157	0	0	logfile
✘	7YVQ	34136	2023-05-13	2022-08-19	3.18	3.50	3.32	3.3	0.004	0.58	0.0	0.04	14.17	0.00	2.131	6.40	0.75	6.2	93.8	0.0	-0.26	0.79	0.87	3.43	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30742	3874	15	0	21	0	0	logfile
✘	7AA5	11690	2023-05-08	2020-09-03	4.18	4.64	—	4.4	0.006	0.92	2.0	0.04	14.67	0.00	2.119	21.41	2.04	15.1	84.7	0.2	-4.78	0.69	0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19705	2448	5	0	1	0	8	logfile
✘	7ZGK	14708	2023-05-06	2022-04-03	3.59	4.63	3.57	3.7	0.002	0.45	0.0	0.04	13.81	0.00	0.454	5.10	0.46	2.2	97.6	0.2	1.65	0.73	0.55	1.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13639	1723	3	0	0	0	0	logfile
✘	7SL7	25193	2023-05-07	2021-10-22	3.1	3.35	—	3.4	0.002	0.56	0.0	0.04	13.08	0.00	2.149	8.91	0.24	5.5	94.2	0.3	-0.86	0.77	0.82	3.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14732	1826	10	0	0	0	0	logfile
✘	8EGS	28129	2023-05-13	2022-09-13	3.92	4.06	3.83	4.0	0.003	0.57	0.0	0.04	14.97	0.00	0.357	27.78	0.35	3.7	96.3	0.0	-0.21	0.78	0.80	1.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30696	3756	18	0	0	0	0	logfile
✘	7V8A	31795	2023-05-16	2021-08-22	2.7	3.21	—	3.1	0.004	0.58	0.0	0.04	14.33	0.00	2.123	10.02	0.00	4.9	95.1	0.0	-0.03	0.74	0.78	1.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	39922	4869	50	0	92	0	0	logfile
✘	7NDC	12283	2023-05-13	2021-01-30	4.1	4.42	—	4.2	0.003	0.56	0.0	0.04	11.70	0.00	2.118	3.57	0.37	3.9	96.1	0.0	-0.43	0.83	0.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30645	3852	27	0	54	0	0	logfile
✘	7M9C	23723	2023-05-13	2021-03-30	4.2	4.61	3.85	4.2	0.003	0.64	4.0	0.04	14.80	0.00	1.350	9.42	0.10	2.6	97.3	0.1	0.09	0.78	0.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30517	3598	26	66	10	0	0	logfile
✘	7VAV	31866	2023-05-12	2021-08-30	2.8	2.66	3.31	3.2	0.002	0.49	0.0	0.04	13.26	0.00	2.035	3.96	0.00	1.5	98.5	0.0	1.80	0.63	0.80	2.95	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29520	3787	14	0	4	0	0	logfile
✘	7P2Y	13174	2023-05-15	2021-07-06	3.1	3.84	—	3.5	0.004	0.70	0.0	0.04	11.76	0.00	2.088	10.47	0.08	3.8	96.2	0.0	0.12	0.82	0.87	2.60	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	37172	4904	30	0	9	3	0	logfile
✘	7SYP	25536	2023-05-12	2021-11-25	4.0	3.37	3.92	3.3	0.003	0.83	4.0	0.04	15.65	0.01	2.250	5.48	0.05	4.7	95.3	0.0	-2.44	0.65	0.62	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	80436	4896	39	1941	2	0	0	logfile
✘	7LWD	23545	2023-05-03	2021-03-01	3.65	3.91	3.58	3.9	0.011	0.97	0.0	0.04	14.88	0.00	2.024	11.24	0.00	6.4	93.6	0.0	-4.15	0.67	0.81	2.29	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6163	769	4	0	3	0	0	logfile
✘	7CP9	30421	2023-05-03	2020-08-06	3.0	3.22	—	3.2	0.007	1.24	0.0	0.04	16.75	0.00	2.183	8.57	7.05	6.5	93.5	0.0	-2.50	0.57	0.74	2.84	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8530	1021	16	0	11	0	0	logfile
✘	7TF7	25864	2023-05-16	2022-01-06	2.13	2.24	—	2.2	0.004	0.61	0.0	0.04	15.42	0.00	2.187	5.57	1.43	2.5	97.4	0.1	1.01	0.47	0.70	5.40	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	39976	4980	12	0	0	0	0	logfile
✘	8E01	27812	2023-05-15	2022-08-08	3.4	3.80	3.71	3.8	0.002	0.56	0.0	0.04	17.85	0.00	2.278	9.40	0.41	2.0	98.0	0.0	-0.28	0.63	0.61	0.23	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	91080	12060	60	0	0	0	0	logfile
✘	7R72	24290	2023-05-16	2021-06-24	3.07	3.12	3.04	3.1	0.003	0.53	0.0	0.04	13.98	0.00	2.007	6.67	0.41	3.7	96.3	0.0	0.87	0.73	0.84	3.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	39443	3040	25	700	1	0	0	logfile
✘	8HRB	34966	2023-05-16	2022-12-15	3.78	3.89	3.82	3.8	0.002	0.48	0.0	0.04	14.55	0.00	2.187	8.99	0.02	4.4	95.6	0.0	-0.91	0.78	0.79	1.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	96352	11778	28	102	8	0	0	logfile
✘	6UMM	20820	2023-05-10	2019-10-09	3.7	6.74	4.15	4.0	0.006	0.79	0.0	0.04	13.23	0.00	2.203	11.97	0.17	4.8	95.2	0.0	-2.07	0.55	0.56	-0.10	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23658	3184	10	0	0	0	0	logfile

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