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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 5GW5 | 9541 | 2023-03-15 | 2016-09-08 | 4.6 | 4.75 | — | 4.7 | 0.002 | 0.58 | 0.0 | 0.04 | 7.37 | 0.00 | 2.136 | 6.87 | 0.01 | 4.5 | 95.4 | 0.1 | -3.73 | 0.74 | 0.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64544 | 8446 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 7oNL | 12997 | 2023-03-15 | 2021-05-25 | 3.9 | 3.35 | 3.58 | 3.6 | 0.002 | 0.38 | 0.0 | 0.04 | 9.17 | 0.00 | 2.180 | 5.51 | 0.41 | 1.5 | 98.5 | 0.0 | 2.97 | 0.64 | 0.80 | 2.02 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13923 | 1827 | 7 | 0 | 0 | 0 | 0 | logfile |
✘ | 7XQi | 33397 | 2023-03-13 | 2022-05-07 | 3.7 | 4.27 | 3.41 | 4.0 | 0.006 | 0.72 | 0.0 | 0.04 | 14.16 | 0.00 | 2.304 | 5.68 | 2.27 | 2.1 | 97.9 | 0.0 | -2.27 | 0.76 | 0.86 | 3.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9582 | 1176 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 7WSF | 32756 | 2023-03-15 | 2022-01-29 | 2.87 | 3.08 | — | 3.1 | 0.003 | 0.44 | 0.0 | 0.04 | 11.23 | 0.00 | 2.016 | 6.14 | 3.87 | 2.7 | 97.3 | 0.0 | -0.12 | 0.72 | 0.81 | 4.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7170 | 879 | 3 | 0 | 1 | 0 | 0 | logfile |
✘ | 6U86 | 20678 | 2023-03-17 | 2019-09-04 | 4.0 | 4.11 | 4.06 | 4.1 | 0.007 | 0.66 | 0.0 | 0.04 | 13.34 | 0.00 | 2.198 | 12.47 | 0.18 | 7.7 | 92.3 | 0.0 | -3.88 | 0.67 | 0.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20140 | 2472 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 7ZJE | 14746 | 2023-03-17 | 2022-04-10 | 3.12 | 3.70 | 3.28 | 3.6 | 0.002 | 0.57 | 0.0 | 0.04 | 11.99 | 0.00 | 2.254 | 7.29 | 0.19 | 8.3 | 91.1 | 0.5 | 0.64 | 0.66 | 0.80 | 1.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19284 | 2380 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 7ZKP | 14764 | 2023-03-17 | 2022-04-13 | 3.2 | 3.49 | 3.33 | 3.5 | 0.004 | 0.73 | 1.0 | 0.04 | 14.42 | 0.00 | 2.119 | 11.26 | 0.09 | 4.3 | 95.5 | 0.2 | 0.98 | 0.63 | 0.71 | 1.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19929 | 2451 | 19 | 0 | 6 | 0 | 0 | logfile |
✘ | 7oE7 | 12861 | 2023-03-14 | 2021-05-01 | 3.73 | 3.95 | 3.97 | 3.7 | 0.002 | 0.53 | 0.0 | 0.04 | 14.33 | 0.00 | 2.084 | 3.86 | 0.00 | 6.8 | 93.2 | 0.0 | -1.48 | 0.79 | 0.64 | 0.91 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11116 | 1382 | 1 | 0 | 2 | 0 | 0 | logfile |
✘ | 7P14 | 13155 | 2023-03-12 | 2021-07-01 | 3.66 | 3.82 | 3.50 | 3.8 | 0.004 | 0.64 | 0.0 | 0.04 | 16.56 | 0.00 | 2.295 | 7.45 | 0.00 | 2.7 | 97.3 | 0.0 | 1.11 | 0.60 | 0.78 | 2.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3796 | 454 | 3 | 0 | 3 | 0 | 0 | logfile |
✘ | 7VGS | 31978 | 2023-03-15 | 2021-09-18 | 2.8 | 3.28 | — | 3.3 | 0.002 | 0.66 | 0.0 | 0.04 | 12.19 | 0.01 | 2.230 | 9.89 | 0.38 | 7.0 | 93.0 | 0.0 | -1.16 | 0.67 | 0.75 | 2.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9700 | 1254 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 7R8B | 24314 | 2023-03-14 | 2021-06-26 | 3.1 | 3.48 | — | 3.3 | 0.002 | 0.55 | 0.0 | 0.04 | 13.48 | 0.00 | 2.103 | 6.66 | 1.94 | 3.5 | 96.5 | 0.0 | -1.73 | 0.67 | 0.85 | 2.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10868 | 1371 | 6 | 0 | 2 | 0 | 0 | logfile |
✘ | 6DWB | 8924 | 2023-03-16 | 2018-06-26 | 3.3 | 3.43 | — | 3.4 | 0.007 | 0.66 | 0.0 | 0.04 | 7.21 | 0.01 | 2.161 | 2.34 | 0.00 | 5.1 | 94.9 | 0.0 | -6.22 | 0.61 | 0.75 | 2.51 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18360 | 2340 | 30 | 0 | 0 | 0 | 0 | logfile |
✘ | 6WB0 | 21583 | 2023-03-13 | 2020-03-26 | 4.2 | 4.26 | — | 4.2 | 0.002 | 0.51 | 0.0 | 0.04 | 11.69 | 0.00 | 2.131 | 11.89 | 0.81 | 4.1 | 95.9 | 0.0 | -4.46 | 0.79 | 0.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8518 | 948 | 4 | 77 | 0 | 0 | 0 | logfile |
✘ | 7S6C | 24868 | 2023-03-15 | 2021-09-13 | 3.1 | 3.69 | — | 3.3 | 0.005 | 0.74 | 0.0 | 0.04 | 14.16 | 0.01 | 2.068 | 4.24 | 0.00 | 4.0 | 96.0 | 0.0 | -0.30 | 0.82 | 0.76 | 2.85 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 47369 | 3190 | 10 | 0 | 2 | 0 | 23420 | logfile |
✘ | 7PKN | 13473 | 2023-03-17 | 2021-08-25 | 3.2 | 3.78 | — | 3.4 | 0.002 | 0.55 | 0.0 | 0.04 | 12.63 | 0.00 | 2.106 | 6.10 | 0.00 | 2.6 | 97.4 | 0.0 | 2.14 | 0.77 | 0.75 | 1.23 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18616 | 2310 | 12 | 0 | 0 | 1 | 0 | logfile |
✘ | 7TD1 | 25820 | 2023-03-15 | 2021-12-30 | 3.08 | 3.31 | — | 3.3 | 0.003 | 0.43 | 0.0 | 0.04 | 11.99 | 0.00 | 2.168 | 2.81 | 0.28 | 1.9 | 98.1 | 0.0 | -0.56 | 0.52 | 0.74 | 3.38 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13492 | 906 | 5 | 0 | 1 | 0 | 6593 | logfile |
✘ | 5oAF | 3773 | 2023-03-17 | 2017-06-21 | 4.06 | 4.15 | — | 4.1 | 0.001 | 0.47 | 0.0 | 0.04 | 9.13 | 0.00 | 2.165 | 12.39 | 0.28 | 2.4 | 97.6 | 0.0 | -2.75 | 0.69 | 0.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19748 | 2538 | 12 | 0 | 6 | 0 | 0 | logfile |
✘ | 7oLA | 12975 | 2023-03-17 | 2021-05-19 | 3.3 | 3.85 | 3.21 | 3.3 | 0.004 | 0.59 | 0.0 | 0.04 | 15.07 | 0.00 | 2.023 | 7.61 | 0.00 | 2.7 | 97.3 | 0.0 | 1.22 | 0.88 | 0.85 | 2.96 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19719 | 2394 | 10 | 0 | 7 | 0 | 0 | logfile |
✘ | 7WK0 | 32554 | 2023-03-13 | 2022-01-08 | 3.32 | 2.37 | — | 2.2 | 0.004 | 0.65 | 0.0 | 0.04 | 11.04 | 0.01 | 2.233 | 9.59 | 7.71 | 12.2 | 87.5 | 0.2 | -4.96 | 0.75 | 0.75 | 3.28 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9724 | 1264 | 8 | 0 | 2 | 0 | 0 | logfile |
✘ | 8DK1 | 27480 | 2023-03-17 | 2022-07-01 | 2.95 | 3.68 | 3.03 | 3.4 | 0.002 | 0.42 | 0.0 | 0.04 | 9.97 | 0.00 | 2.294 | 2.83 | 1.44 | 3.3 | 96.7 | 0.0 | 2.11 | 0.85 | 0.90 | 2.51 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19500 | 2446 | 8 | 0 | 0 | 0 | 0 | logfile |