Table showing results for May 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7VBP	31884	2023-05-16	2021-09-01	2.8	2.85	—	2.8	0.007	0.88	0.0	0.04	15.55	0.01	1.741	9.47	0.32	4.3	95.7	0.1	1.21	0.75	0.89	3.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	39022	4652	61	0	21	349	0	logfile
✘	8D7R	27231	2023-05-04	2022-06-07	3.9	4.13	3.91	4.0	0.003	0.54	0.0	0.04	11.99	0.00	2.345	5.62	0.00	8.1	91.9	0.0	-3.25	0.60	0.56	0.88	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9627	1167	12	0	16	0	0	logfile
✘	7MBP	23740	2023-05-13	2021-04-01	2.8	3.41	—	3.1	0.003	0.56	0.0	0.04	12.29	0.00	2.028	7.59	0.30	2.7	97.2	0.1	1.88	0.72	0.83	3.33	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30708	3984	8	0	12	0	0	logfile
✘	7ZES	14692	2023-05-06	2022-03-31	3.1	3.32	3.11	3.4	0.005	0.61	0.0	0.04	13.69	0.01	1.966	5.90	0.00	2.3	97.7	0.0	0.35	0.75	0.82	3.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13538	1654	6	10	4	0	0	logfile
✘	7XQi	33397	2023-05-04	2022-05-07	3.7	4.27	3.41	4.0	0.006	0.72	0.0	0.04	14.16	0.00	2.304	5.68	2.27	2.1	97.9	0.0	-2.27	0.76	0.86	3.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9582	1176	6	0	0	0	0	logfile
✘	7ZJE	14746	2023-05-08	2022-04-10	3.12	3.70	3.28	3.6	0.002	0.57	0.0	0.04	11.99	0.00	2.254	7.29	0.19	8.3	91.1	0.5	0.64	0.66	0.80	1.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19284	2380	4	0	0	0	0	logfile
✘	6WB0	21583	2023-05-03	2020-03-26	4.2	4.26	—	4.2	0.002	0.51	0.0	0.04	11.69	0.00	2.131	11.89	0.81	4.1	95.9	0.0	-4.46	0.79	0.74	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8518	948	4	77	0	0	0	logfile
✘	7UNL	26626	2023-05-05	2022-04-11	2.45	3.35	2.50	3.1	0.003	0.56	0.0	0.04	14.66	0.00	2.143	2.41	1.94	1.1	98.9	0.0	2.30	0.72	0.83	3.52	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11724	734	6	0	8	120	5900	logfile
✘	7PSL	13613	2023-05-04	2021-09-23	3.3	3.77	—	3.7	0.006	0.65	0.0	0.04	14.91	0.00	2.258	5.27	0.00	3.9	96.1	0.0	-3.04	0.61	0.76	2.57	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9612	1200	4	0	4	0	0	logfile
✘	7VYS	32214	2023-05-16	2021-11-15	2.5	2.59	—	2.6	0.008	0.85	0.0	0.04	18.82	0.01	1.328	6.47	0.97	3.5	96.4	0.1	1.73	0.76	0.91	4.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	40113	4727	64	0	27	425	0	logfile
✘	8EoS	28466	2023-05-10	2022-10-04	3.1	3.84	3.11	3.5	0.005	0.57	0.0	0.04	14.88	0.00	1.840	20.11	3.59	5.2	94.7	0.2	-0.81	0.90	0.89	2.61	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25606	3069	11	87	5	0	0	logfile
✘	7VZ8	32222	2023-05-15	2021-11-15	2.7	2.77	—	2.7	0.006	0.81	0.0	0.04	18.09	0.01	2.199	7.97	1.35	3.8	96.1	0.1	1.51	0.76	0.91	3.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	39019	4648	64	0	21	345	0	logfile
✘	7V69	31739	2023-05-04	2021-08-20	3.4	2.24	—	2.0	0.003	0.65	0.0	0.04	12.64	0.00	2.096	13.28	0.00	2.9	97.1	0.0	-2.02	0.68	0.64	2.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8539	1122	5	0	0	0	0	logfile
✘	7MDi	23773	2023-05-13	2021-04-05	4.3	4.42	—	4.3	0.006	0.75	0.0	0.04	13.13	0.00	2.089	11.76	0.17	10.8	89.2	0.1	-4.24	0.78	0.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30608	4348	20	0	24	24	0	logfile
✘	7Fii	31598	2023-05-04	2021-07-31	4.3	4.37	—	4.1	0.002	0.36	0.0	0.04	8.97	0.00	2.073	1.66	0.00	0.9	99.1	0.0	3.08	0.64	0.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8765	1522	6	0	0	0	0	logfile
✘	8CYD	27075	2023-05-12	2022-05-23	2.6	3.24	2.62	3.0	0.002	0.51	0.0	0.04	12.52	0.01	1.930	6.47	0.32	4.9	94.7	0.4	0.04	0.77	0.79	2.24	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	28454	3663	6	0	0	0	0	logfile
✘	6SJE	10215	2023-05-10	2019-08-13	4.1	4.27	—	4.1	0.003	0.59	0.0	0.04	13.69	0.01	2.264	4.40	3.06	2.1	97.9	0.0	-3.60	0.82	0.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24115	2847	4	68	0	0	0	logfile
✘	7D61	30587	2023-05-11	2020-09-28	2.8	2.98	—	3.0	0.003	0.77	0.0	0.04	16.22	0.01	2.340	1.83	0.00	2.4	97.6	0.0	-7.13	0.69	0.82	2.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	26664	3168	22	0	55	0	0	logfile
✘	7P2Y	13174	2023-05-15	2021-07-06	3.1	3.84	—	3.5	0.004	0.70	0.0	0.04	11.76	0.00	2.088	10.47	0.08	3.8	96.2	0.0	0.12	0.82	0.87	2.60	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	37172	4904	30	0	9	3	0	logfile
✘	8HRB	34966	2023-05-16	2022-12-15	3.78	3.89	3.82	3.8	0.002	0.48	0.0	0.04	14.55	0.00	2.187	8.99	0.02	4.4	95.6	0.0	-0.91	0.78	0.79	1.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	96352	11778	28	102	8	0	0	logfile

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