Table showing results for May 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7TJQ	25929	2023-05-12	2022-01-16	3.13	2.03	—	2.0	0.004	0.77	0.0	0.05	13.25	0.01	2.288	1.08	1.03	4.5	95.5	0.0	-0.55	0.75	0.75	3.94	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20538	2679	21	0	12	0	0	logfile
✘	6VQ9	21345	2023-05-15	2020-02-04	3.6	3.93	—	3.8	0.010	0.90	0.0	0.06	11.23	0.00	1.809	1.10	0.10	2.7	97.1	0.2	0.25	0.65	0.71	2.13	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	36114	4578	17	0	2	0	0	logfile
✘	7MZ6	24084	2023-05-08	2021-05-24	2.91	3.02	2.87	3.0	0.009	0.91	0.0	0.26	12.60	0.00	2.085	1.16	0.77	5.5	94.2	0.2	0.24	0.63	0.88	3.88	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20377	2476	8	0	9	0	0	logfile
✘	7JY8	22524	2023-05-15	2020-08-29	2.4	2.54	—	2.5	0.015	1.94	6.0	0.10	19.58	0.00	2.168	1.17	7.58	3.1	96.7	0.2	-2.00	0.62	0.71	3.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	46728	2964	20	37	18	0	23368	logfile
✘	7L02	23094	2023-05-17	2020-12-10	3.2	3.91	—	3.7	0.015	1.55	4.0	0.10	11.97	0.01	2.370	1.29	0.70	3.3	96.7	0.0	-0.25	0.80	0.74	2.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	44110	3776	23	0	69	0	13841	logfile
✘	6Y5D	10694	2023-05-12	2020-02-25	4.1	5.00	—	4.0	0.013	1.23	0.0	0.07	25.87	0.01	2.251	1.31	0.11	2.0	97.9	0.1	0.59	0.86	0.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30372	2218	31	612	11	0	0	logfile
✘	7DK4	30702	2023-05-14	2020-11-23	3.8	3.20	—	3.4	0.003	0.55	0.0	0.04	7.92	0.00	2.106	1.33	0.15	2.8	97.2	0.0	-3.26	0.58	0.47	1.13	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	34707	4470	9	0	0	0	0	logfile
✘	7L8G	23233	2023-05-07	2020-12-31	4.3	4.35	4.01	4.1	0.022	1.76	0.0	0.16	10.27	0.02	2.354	1.35	0.00	1.2	98.8	0.0	0.64	0.79	0.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15802	1695	39	0	307	0	0	logfile
✘	7DW9	30877	2023-05-04	2021-01-15	2.6	3.41	—	3.1	0.006	0.77	0.0	0.10	12.06	0.01	2.306	1.39	0.09	2.4	97.6	0.0	-0.01	0.73	0.87	4.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10105	1283	8	0	4	0	0	logfile
✘	8DGC	27421	2023-05-13	2022-06-23	3.4	3.02	3.70	3.0	0.006	0.96	2.0	0.05	13.60	0.01	1.993	1.47	0.14	1.9	98.1	0.0	-0.33	0.51	0.52	1.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	81600	10216	16	0	16	0	0	logfile
✘	6VQB	21347	2023-05-15	2020-02-04	3.6	3.97	—	3.9	0.010	0.89	0.0	0.06	10.80	0.00	2.221	1.58	0.05	2.6	97.2	0.2	0.25	0.69	0.75	1.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	36113	4578	17	0	1	0	0	logfile
✘	7Fii	31598	2023-05-04	2021-07-31	4.3	4.37	—	4.1	0.002	0.36	0.0	0.04	8.97	0.00	2.073	1.66	0.00	0.9	99.1	0.0	3.08	0.64	0.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8765	1522	6	0	0	0	0	logfile
✘	6VQA	21346	2023-05-15	2020-02-04	3.7	4.02	—	3.9	0.010	0.89	0.0	0.06	10.83	0.00	2.302	1.69	0.05	2.7	97.1	0.2	0.27	0.68	0.72	2.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	36114	4578	17	0	2	0	0	logfile
✘	8H0X	34417	2023-05-10	2022-09-30	2.57	2.80	2.62	2.7	0.008	0.93	0.0	0.06	12.74	0.01	2.257	1.76	1.11	3.3	96.7	0.0	-0.82	0.81	0.86	3.97	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25122	3117	6	0	48	0	0	logfile
✘	6R94	4768	2023-05-09	2019-04-02	3.5	2.44	—	3.6	0.012	1.01	1.0	0.07	26.38	0.01	2.114	1.78	0.00	3.0	96.6	0.4	0.29	0.74	0.70	2.23	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22367	803	10	290	0	0	9995	logfile
✘	8AVV	15684	2023-05-03	2022-08-27	3.4	3.53	3.39	3.5	0.008	1.38	0.0	0.08	18.27	0.01	2.580	1.80	5.03	4.7	95.1	0.2	-3.08	0.76	0.87	2.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7794	1010	4	0	2	0	0	logfile
✘	7D61	30587	2023-05-11	2020-09-28	2.8	2.98	—	3.0	0.003	0.77	0.0	0.04	16.22	0.01	2.340	1.83	0.00	2.4	97.6	0.0	-7.13	0.69	0.82	2.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	26664	3168	22	0	55	0	0	logfile
✘	8DLY	27520	2023-05-02	2022-07-08	3.0	3.63	2.92	3.6	0.005	0.94	0.0	0.06	12.37	0.01	2.317	1.86	0.37	3.5	96.5	0.0	-1.46	0.63	0.81	3.36	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2483	314	3	0	1	0	0	logfile
✘	7YQM	34029	2023-05-03	2022-08-08	2.89	3.15	2.89	3.2	0.005	0.58	0.0	0.05	11.88	0.00	2.294	1.86	0.17	4.7	95.3	0.0	-0.02	0.67	0.78	4.18	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5656	723	1	0	0	0	0	logfile
✘	7ZJ7	14743	2023-05-05	2022-04-08	3.95	4.15	3.84	4.0	0.013	1.90	0.0	0.09	15.37	0.02	2.329	1.87	0.55	4.8	95.2	0.0	-3.03	0.80	0.81	2.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11958	1458	18	0	36	0	0	logfile

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