Table showing results for March 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7M3G	23654	2023-03-14	2021-03-18	2.5	2.29	—	1.8	0.007	0.96	14.0	0.06	17.07	0.01	2.281	2.21	0.93	3.0	97.0	0.0	-2.02	0.84	0.85	3.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13298	1627	11	0	41	0	0	logfile
✘	6Li9	0903	2023-03-16	2019-12-10	2.3	2.38	—	2.4	0.008	1.00	0.0	0.07	13.76	0.01	2.265	2.26	0.21	5.0	95.0	0.0	-4.31	0.63	0.75	4.03	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17988	2164	22	0	26	246	0	logfile
✘	6RWo	10044	2023-03-16	2019-06-05	3.05	3.20	3.05	3.2	0.013	0.82	0.0	0.05	17.07	0.01	1.994	2.29	4.10	3.3	96.7	0.0	-3.00	0.67	0.83	3.08	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18366	2076	26	86	16	6	0	logfile
✘	7Eo4	31226	2023-03-12	2021-04-21	2.86	2.93	—	2.9	0.019	1.00	0.0	0.17	14.00	0.01	2.220	2.30	0.00	7.2	92.8	0.0	-1.38	0.60	0.71	2.26	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8302	1059	6	0	1	0	0	logfile
✘	6DWB	8924	2023-03-16	2018-06-26	3.3	3.43	—	3.4	0.007	0.66	0.0	0.04	7.21	0.01	2.161	2.34	0.00	5.1	94.9	0.0	-6.22	0.61	0.75	2.51	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18360	2340	30	0	0	0	0	logfile
✘	6XXD	10647	2023-03-15	2020-01-27	3.22	2.31	—	3.1	0.007	1.05	0.0	0.06	11.45	0.00	2.647	2.40	0.00	5.7	94.3	0.0	-2.51	0.70	0.68	2.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14896	2000	16	0	0	0	0	logfile
✘	7VFF	31951	2023-03-14	2021-09-13	4.1	3.76	3.90	4.0	0.007	0.72	0.0	0.05	13.87	0.00	2.334	2.40	0.41	3.6	96.4	0.0	-0.82	0.79	0.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12579	1581	3	0	0	0	0	logfile
✘	7UNL	26626	2023-03-14	2022-04-11	2.45	3.35	2.50	3.1	0.003	0.56	0.0	0.04	14.66	0.00	2.143	2.41	1.94	1.1	98.9	0.0	2.30	0.72	0.83	3.52	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11724	734	6	0	8	120	5900	logfile
✘	6ZY9	11555	2023-03-15	2020-07-30	3.3	3.42	—	3.5	0.004	0.81	0.0	0.05	12.81	0.01	2.174	2.45	0.25	4.7	95.3	0.0	-5.76	0.62	0.71	1.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14973	1985	14	0	4	0	0	logfile
✘	6W1J	21511	2023-03-16	2020-03-04	2.92	3.34	2.83	3.2	0.010	1.17	0.0	0.10	10.28	0.01	2.337	2.46	0.82	5.6	94.4	0.0	-5.20	0.76	0.88	4.98	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16861	1965	25	0	41	0	0	logfile
✘	6UZZ	20965	2023-03-16	2019-11-16	3.1	3.48	—	3.4	0.009	0.92	0.0	0.06	10.61	0.01	2.325	2.53	0.24	1.8	98.0	0.2	-4.22	0.60	0.81	3.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15832	1984	12	0	8	0	0	logfile
✘	7T6o	25721	2023-03-17	2021-12-14	2.6	2.80	—	2.9	0.004	0.79	0.0	0.05	14.06	0.01	2.302	2.54	0.00	1.3	98.7	0.0	-1.56	0.67	0.84	3.82	—	—	—	—	—	—	—	—	—	—	—	—	—	1.76	—	—	—	3.34	19412	2424	4	0	0	0	0	logfile
✘	7XSQ	33431	2023-03-16	2022-05-15	2.88	2.17	2.83	2.1	0.009	0.93	3.0	0.06	17.11	0.01	2.157	2.60	2.74	6.1	93.8	0.1	-2.88	0.77	0.75	2.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16573	1967	4	34	4	0	0	logfile
✘	7W55	32314	2023-03-16	2021-11-29	2.8	2.24	—	3.0	0.005	0.72	1.0	0.06	11.82	0.00	2.126	2.62	0.50	2.1	97.9	0.0	0.64	0.73	0.73	3.93	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18334	1167	6	0	0	0	9112	logfile
✘	2XEA	1730	2023-03-14	2010-05-12	4.6	4.10	—	4.2	0.012	2.12	0.0	0.12	20.46	0.02	1.226	2.63	3.68	8.6	90.1	1.3	-3.51	0.39	0.42	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	62671	7546	98	147	0	0	0	logfile
✘	6RWL	10041	2023-03-16	2019-06-05	3.36	3.67	3.45	3.6	0.003	0.56	0.0	0.04	16.02	0.00	2.348	2.63	2.86	3.1	96.9	0.0	-3.04	0.70	0.83	2.24	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18272	2076	24	86	8	0	0	logfile
✘	7RWA	24712	2023-03-16	2021-08-19	4.7	5.66	4.89	4.6	0.003	0.89	0.0	0.05	5.84	0.00	1.914	2.65	0.00	5.8	93.7	0.5	-0.12	0.84	0.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16158	3244	10	0	0	0	0	logfile
✘	7NHo	12335	2023-03-17	2021-02-11	2.66	3.46	—	3.3	0.014	2.16	1.0	0.44	18.54	0.02	1.974	2.75	1.77	5.4	94.4	0.1	-2.33	0.58	0.79	3.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19800	2086	26	0	62	0	0	logfile
✘	7TD1	25820	2023-03-15	2021-12-30	3.08	3.31	—	3.3	0.003	0.43	0.0	0.04	11.99	0.00	2.168	2.81	0.28	1.9	98.1	0.0	-0.56	0.52	0.74	3.38	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13492	906	5	0	1	0	6593	logfile
✘	7SXY	25510	2023-03-12	2021-11-24	2.79	3.53	—	3.2	0.005	0.84	0.0	0.06	13.35	0.01	2.303	2.81	0.00	1.3	98.7	0.0	-0.48	0.82	0.87	3.37	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6557	797	4	0	7	0	0	logfile

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