Table showing results for May 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7ZL1	14774	2023-05-11	2022-04-13	2.5	2.06	2.45	2.4	0.007	0.88	0.0	0.06	14.64	0.01	2.033	2.59	0.65	5.7	93.3	1.0	-0.02	0.73	0.86	6.02	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	27257	1720	24	0	8	379	13574	logfile
✘	7XSQ	33431	2023-05-07	2022-05-15	2.88	2.17	2.83	2.1	0.009	0.93	3.0	0.06	17.11	0.01	2.157	2.60	2.74	6.1	93.8	0.1	-2.88	0.77	0.75	2.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16573	1967	4	34	4	0	0	logfile
✘	6HYD	0308	2023-05-05	2018-10-19	3.9	4.01	—	4.0	0.004	0.85	0.0	0.05	9.33	0.01	2.319	2.63	0.24	5.7	94.0	0.3	-6.69	0.74	0.77	2.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12168	1543	1	0	31	0	0	logfile
✘	8DBU	27307	2023-05-15	2022-06-14	3.4	3.79	3.34	3.4	0.004	0.83	3.0	0.05	14.18	0.01	1.900	2.64	0.76	1.6	98.4	0.0	-0.05	0.77	0.84	2.57	—	—	—	—	—	—	—	—	—	—	—	—	—	0.80	—	—	—	2.11	36917	4845	28	0	11	0	0	logfile
✘	7RWA	24712	2023-05-07	2021-08-19	4.7	5.66	4.89	4.6	0.003	0.89	0.0	0.05	5.84	0.00	1.914	2.65	0.00	5.8	93.7	0.5	-0.12	0.84	0.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16158	3244	10	0	0	0	0	logfile
✘	7SY3	25515	2023-05-11	2021-11-24	2.95	3.95	—	3.2	0.005	0.82	0.0	0.06	13.42	0.01	2.278	2.67	0.00	1.9	98.1	0.0	-0.06	0.84	0.82	2.39	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	27001	3321	26	0	62	0	0	logfile
✘	8CSR	26968	2023-05-09	2022-05-13	2.54	2.48	2.56	2.6	0.004	0.65	0.0	0.38	14.52	0.01	1.910	2.68	0.00	1.7	98.3	0.0	1.19	0.72	0.78	3.16	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	69868	6354	42	854	43	46	0	logfile
✘	7TU8	26129	2023-05-16	2022-02-02	2.6	2.05	2.59	2.0	0.011	0.81	0.0	0.05	13.32	0.00	1.874	2.75	0.00	2.8	97.0	0.2	0.45	0.81	0.80	4.16	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20232	2604	12	0	24	0	0	logfile
✘	6RJA	4901	2023-05-08	2019-04-26	3.0	3.11	—	3.1	0.005	0.86	0.0	0.05	14.79	0.01	2.314	2.75	0.23	5.8	94.2	0.0	-3.51	0.64	0.81	2.74	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20372	1996	8	194	0	0	0	logfile
✘	7JMC	22391	2023-05-17	2020-07-31	2.5	2.76	2.68	2.7	0.010	1.29	0.0	0.06	13.90	0.01	2.249	2.77	0.57	1.6	98.4	0.0	3.40	0.62	0.82	4.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	39828	2304	36	0	144	168	18576	logfile
✘	6ACH	9592	2023-05-09	2018-07-26	3.2	3.31	—	3.3	0.016	1.36	0.0	0.07	10.69	0.01	2.261	2.79	1.03	7.2	92.8	0.0	-3.92	0.74	0.81	4.44	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23240	2912	16	0	8	0	0	logfile
✘	7SXY	25510	2023-05-03	2021-11-24	2.79	3.53	—	3.2	0.005	0.84	0.0	0.06	13.35	0.01	2.303	2.81	0.00	1.3	98.7	0.0	-0.48	0.82	0.87	3.37	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6557	797	4	0	7	0	0	logfile
✘	8CPS	16784	2023-05-15	2023-03-03	1.82	1.69	1.90	1.7	0.003	0.66	0.0	0.05	15.42	0.01	2.116	2.82	0.00	1.0	99.0	0.0	2.28	0.75	0.81	8.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	36034	4152	72	0	38	1916	0	logfile
✘	7WKK	32566	2023-05-15	2022-01-10	4.2	4.30	—	3.9	0.006	0.63	0.0	0.04	4.94	0.00	2.138	2.83	0.00	4.7	95.2	0.1	-2.36	0.46	0.60	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	92821	18728	30	0	0	0	0	logfile
✘	6HZ7	0313	2023-05-07	2018-10-22	4.3	4.43	4.32	4.3	0.008	0.97	0.0	0.05	14.60	0.01	1.959	2.86	0.59	2.9	97.1	0.0	-0.47	0.81	0.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	67582	4120	26	6	12	0	33368	logfile
✘	6U59	20642	2023-05-08	2019-08-27	3.86	4.44	3.91	4.3	0.019	1.81	0.0	0.10	10.64	0.01	2.234	2.86	0.72	2.5	97.3	0.1	0.59	0.79	0.80	2.60	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20439	2412	57	0	117	0	0	logfile
✘	8CUE	26999	2023-05-15	2022-05-17	3.2	3.57	3.25	3.7	0.010	1.82	0.0	0.04	21.60	0.00	2.541	2.88	0.00	1.5	98.5	0.0	0.78	0.73	0.83	2.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	37240	4900	140	0	70	0	0	logfile
✘	7WF7	32461	2023-05-03	2021-12-26	3.4	3.19	—	3.2	0.004	0.83	0.0	0.05	13.56	0.00	2.288	2.88	0.00	4.4	95.6	0.0	-1.14	0.55	0.64	1.44	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8136	1034	6	0	1	0	0	logfile
✘	7W92	32359	2023-05-10	2021-12-09	3.1	2.79	—	3.3	0.003	0.67	0.0	0.05	13.05	0.01	2.306	2.89	0.11	3.7	96.3	0.0	-4.34	0.80	0.76	2.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25071	3206	3	0	0	0	0	logfile
✘	7XU5	33459	2023-05-17	2022-05-18	3.1	3.44	2.94	3.2	0.008	0.76	0.0	0.05	13.78	0.00	2.104	2.92	0.00	3.9	96.1	0.0	-1.17	0.84	0.82	2.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	44292	2814	12	0	45	0	21549	logfile

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