Table showing results for May 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6YT5	10912	2023-05-16	2020-04-23	3.0	2.67	—	3.3	0.010	0.73	0.0	0.05	15.51	0.00	2.196	13.84	0.15	8.0	92.0	0.0	-4.28	0.85	0.81	2.08	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	39078	5040	12	0	0	0	0	logfile
✘	7ZC5	14620	2023-05-15	2022-03-25	3.0	2.69	—	2.6	0.007	0.85	0.0	1.48	15.51	0.01	2.216	5.43	1.96	3.0	97.0	0.0	-0.62	0.89	0.87	3.49	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	36692	4645	24	0	23	0	0	logfile
✘	7RAV	24387	2023-05-03	2021-07-02	3.3	2.69	3.21	2.4	0.004	0.93	0.0	0.05	15.84	0.01	2.224	16.68	1.17	16.7	82.9	0.4	-3.36	0.72	0.71	2.18	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6215	773	1	0	1	0	0	logfile
✘	7Y7W	33672	2023-05-03	2022-06-22	2.4	2.70	2.46	2.7	0.006	0.78	0.0	0.08	17.46	0.00	1.907	5.88	1.11	3.0	97.0	0.0	0.06	0.68	0.85	4.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4310	529	1	0	7	48	0	logfile
✘	7X28	32961	2023-05-15	2022-02-25	2.49	2.72	—	1.8	0.013	1.52	5.0	0.11	13.24	0.00	1.606	7.72	7.98	2.7	97.0	0.2	2.21	0.57	0.40	0.90	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	31583	4119	7	0	0	0	0	logfile
✘	6SD1	10145	2023-05-16	2019-07-26	2.6	2.74	2.55	2.7	0.003	0.53	0.0	0.04	12.42	0.00	2.149	8.45	0.00	4.3	95.7	0.0	-2.90	0.74	0.84	4.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	39369	4983	33	0	0	0	0	logfile
✘	6JPA	9868	2023-05-09	2019-03-26	2.6	2.76	—	2.8	0.013	1.51	3.0	0.12	17.16	0.01	1.921	38.35	11.40	8.8	89.5	1.7	-3.83	0.54	0.61	1.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22232	2694	14	0	42	0	0	logfile
✘	7JMC	22391	2023-05-17	2020-07-31	2.5	2.76	2.68	2.7	0.010	1.29	0.0	0.06	13.90	0.01	2.249	2.77	0.57	1.6	98.4	0.0	3.40	0.62	0.82	4.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	39828	2304	36	0	144	168	18576	logfile
✘	7VZ8	32222	2023-05-15	2021-11-15	2.7	2.77	—	2.7	0.006	0.81	0.0	0.04	18.09	0.01	2.199	7.97	1.35	3.8	96.1	0.1	1.51	0.76	0.91	3.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	39019	4648	64	0	21	345	0	logfile
✘	7T4M	25680	2023-05-16	2021-12-10	2.48	2.77	2.55	2.7	0.001	0.38	0.0	0.04	9.69	0.00	2.253	4.85	0.97	1.6	98.4	0.0	1.34	0.72	0.86	4.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	39054	4854	12	0	0	0	0	logfile
✘	6Q05	20543	2023-05-12	2019-08-01	2.8	2.78	—	2.7	0.025	2.06	27.0	0.16	11.50	0.01	2.255	2.06	0.91	1.7	98.3	0.1	0.58	0.76	0.80	4.27	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	28977	3477	42	0	144	195	0	logfile
✘	7D8X	30614	2023-05-05	2020-10-11	2.6	2.78	—	2.7	0.010	1.31	0.0	0.06	11.16	0.01	2.221	3.29	0.18	5.1	94.9	0.0	-3.36	0.70	0.86	4.37	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10928	1314	13	0	28	0	0	logfile
✘	7X08	32920	2023-05-15	2022-02-21	2.7	2.78	—	2.8	0.009	0.96	0.0	0.10	17.17	0.01	1.910	14.34	10.68	8.4	90.6	0.9	-2.76	0.63	0.76	2.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	36396	4572	36	0	81	0	0	logfile
✘	7W92	32359	2023-05-10	2021-12-09	3.1	2.79	—	3.3	0.003	0.67	0.0	0.05	13.05	0.01	2.306	2.89	0.11	3.7	96.3	0.0	-4.34	0.80	0.76	2.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25071	3206	3	0	0	0	0	logfile
✘	7VWL	32155	2023-05-16	2021-11-11	2.7	2.79	—	2.8	0.007	0.88	2.0	0.05	15.56	0.01	2.079	12.06	0.20	4.0	95.9	0.1	1.41	0.74	0.87	3.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	39049	4652	62	0	22	345	0	logfile
✘	8H0X	34417	2023-05-10	2022-09-30	2.57	2.80	2.62	2.7	0.008	0.93	0.0	0.06	12.74	0.01	2.257	1.76	1.11	3.3	96.7	0.0	-0.82	0.81	0.86	3.97	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25122	3117	6	0	48	0	0	logfile
✘	6D6R	7809	2023-05-13	2018-04-22	3.45	2.80	—	3.3	0.008	0.68	0.0	0.04	10.12	0.00	1.816	9.28	0.03	10.0	90.0	0.0	-4.48	0.83	0.79	2.57	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	31639	3889	17	61	3	0	0	logfile
✘	8HK1	34841	2023-05-12	2022-11-24	2.7	2.81	2.75	2.9	0.005	0.89	3.0	0.13	16.22	0.01	1.262	10.95	5.96	3.6	96.3	0.1	-2.81	0.56	0.61	2.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30236	4205	24	148	5	0	0	logfile
✘	6RW6	10033	2023-05-16	2019-06-04	2.75	2.81	—	2.7	0.011	0.96	0.0	0.06	9.75	0.01	2.148	4.16	0.00	2.2	97.8	0.0	-3.68	0.85	0.87	4.43	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	98645	12425	5	0	0	0	0	logfile
✘	7S4K	24829	2023-05-17	2021-09-09	2.36	2.82	—	2.6	0.009	1.05	3.0	0.05	18.91	0.00	1.448	13.70	3.29	5.4	94.4	0.2	0.71	0.74	0.82	4.62	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22589	2577	27	0	63	110	0	logfile

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