Table showing results for October 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7RAV	24387	2023-10-03	2021-07-02	3.3	2.69	3.21	2.4	0.004	0.93	0.0	0.05	15.84	0.01	2.224	16.68	1.17	16.7	82.9	0.4	-3.36	0.72	0.71	2.18	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6215	773	1	0	1	0	0	logfile
✘	8D45	27175	2023-10-10	2022-06-01	2.62	2.70	2.64	2.9	0.004	0.79	0.0	0.04	17.51	0.01	2.203	4.67	0.92	5.2	94.8	0.0	-1.43	0.62	0.71	3.11	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20932	1358	4	0	0	0	10370	logfile
✘	7Y7W	33672	2023-10-02	2022-06-22	2.4	2.70	2.46	2.7	0.006	0.78	0.0	0.08	17.46	0.00	1.907	5.88	1.11	3.0	97.0	0.0	0.06	0.68	0.85	4.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4310	529	1	0	7	48	0	logfile
✘	8FAZ	28961	2023-10-03	2022-11-29	2.3	2.71	2.34	3.1	0.004	0.62	0.0	0.04	10.77	0.00	1.986	10.57	0.50	2.7	97.3	0.0	0.35	0.83	0.81	3.43	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7331	926	7	0	5	0	0	logfile
✘	8H87	34531	2023-10-03	2022-10-21	2.53	2.73	2.50	2.7	0.011	1.55	0.0	0.08	18.62	0.02	2.300	4.49	0.91	2.3	97.7	0.0	-1.32	0.58	0.79	4.94	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7083	777	6	0	48	147	0	logfile
✘	7QSN	14139	2023-10-10	2022-01-13	2.81	2.74	2.82	2.7	0.008	0.92	0.0	0.85	15.31	0.00	1.443	3.83	0.01	3.3	96.7	0.0	-0.45	0.77	0.87	4.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	69320	8201	116	0	59	1096	0	logfile
✘	7Yi2	33849	2023-10-06	2022-07-14	3.4	2.75	3.37	2.7	0.003	0.59	0.0	0.04	18.17	0.01	2.062	9.71	0.23	6.9	93.1	0.0	-0.99	0.75	0.77	2.10	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12140	1397	9	33	5	0	0	logfile
✘	6JPA	9868	2023-10-11	2019-03-26	2.6	2.76	—	2.8	0.013	1.51	3.0	0.12	17.16	0.01	1.921	38.35	11.40	8.8	89.5	1.7	-3.83	0.54	0.61	1.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22232	2694	14	0	42	0	0	logfile
✘	7ZJL	14750	2023-10-10	2022-04-11	2.6	2.76	2.80	2.7	0.012	1.76	11.0	0.09	12.92	0.01	2.495	0.07	0.48	4.0	95.9	0.0	-0.24	0.68	0.69	3.58	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	69412	4551	9	0	0	0	34272	logfile
✘	7X08	32920	2023-10-17	2022-02-21	2.7	2.78	—	2.8	0.009	0.96	0.0	0.10	17.17	0.01	1.910	14.34	10.68	8.4	90.6	0.9	-2.76	0.63	0.76	2.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	36396	4572	36	0	81	0	0	logfile
✘	7D8X	30614	2023-10-05	2020-10-11	2.6	2.78	—	2.7	0.010	1.31	0.0	0.06	11.16	0.01	2.221	3.29	0.18	5.1	94.9	0.0	-3.36	0.70	0.86	4.37	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10928	1314	13	0	28	0	0	logfile
✘	8AZS	15770	2023-10-04	2022-09-06	2.9	2.78	2.55	2.8	0.011	1.50	0.0	0.12	16.09	0.01	0.017	1346.55	0.00	3.1	96.9	0.0	-1.98	0.27	0.40	5.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9036	1224	36	0	0	0	0	logfile
✘	7W92	32359	2023-10-12	2021-12-09	3.1	2.79	—	3.3	0.003	0.67	0.0	0.05	13.05	0.01	2.306	2.89	0.11	3.7	96.3	0.0	-4.34	0.80	0.76	2.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25071	3206	3	0	0	0	0	logfile
✘	7QSL	14133	2023-10-10	2022-01-13	2.76	2.80	2.81	2.7	0.010	0.96	0.0	0.84	14.23	0.00	1.561	3.91	0.06	3.1	96.8	0.0	-0.57	0.78	0.89	5.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	69734	8287	109	0	56	1024	0	logfile
✘	6X9o	22106	2023-10-10	2020-06-03	2.6	2.80	2.63	2.7	0.006	0.81	1.0	0.05	15.46	0.00	1.953	15.09	0.56	6.3	93.4	0.3	-2.11	0.79	0.86	2.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20899	2669	2	0	0	0	0	logfile
✘	8H0X	34417	2023-10-12	2022-09-30	2.57	2.80	2.62	2.7	0.008	0.93	0.0	0.06	12.74	0.01	2.257	1.76	1.11	3.3	96.7	0.0	-0.82	0.81	0.86	3.97	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25122	3117	6	0	48	0	0	logfile
✘	6RW6	10033	2023-10-18	2019-06-04	2.75	2.81	—	2.7	0.011	0.96	0.0	0.06	9.75	0.01	2.148	4.16	0.00	2.2	97.8	0.0	-3.68	0.85	0.87	4.43	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	98645	12425	5	0	0	0	0	logfile
✘	8DTP	27707	2023-10-10	2022-07-26	2.7	2.81	2.75	2.8	0.004	0.63	0.0	0.05	11.93	0.00	1.973	9.42	1.92	5.2	94.8	0.0	0.52	0.65	0.79	3.58	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20944	2592	12	12	10	0	0	logfile
✘	7WJU	32548	2023-10-04	2022-01-07	2.69	2.82	—	2.8	0.007	0.99	0.0	0.07	17.67	0.01	2.325	3.53	0.00	5.3	94.5	0.2	-2.47	0.72	0.81	3.88	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8322	607	5	158	0	0	0	logfile
✘	8G3V	29710	2023-10-10	2023-02-08	2.2	2.84	2.21	2.7	0.014	1.61	4.0	0.09	13.68	0.01	2.257	0.54	0.00	3.9	95.8	0.3	-0.74	0.83	0.93	6.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20045	2500	28	0	61	0	0	logfile

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