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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6YT5 | 10912 | 2023-05-16 | 2020-04-23 | 3.0 | 2.67 | — | 3.3 | 0.010 | 0.73 | 0.0 | 0.05 | 15.51 | 0.00 | 2.196 | 13.84 | 0.15 | 8.0 | 92.0 | 0.0 | -4.28 | 0.85 | 0.81 | 2.08 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 39078 | 5040 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 7ZC5 | 14620 | 2023-05-15 | 2022-03-25 | 3.0 | 2.69 | — | 2.6 | 0.007 | 0.85 | 0.0 | 1.48 | 15.51 | 0.01 | 2.216 | 5.43 | 1.96 | 3.0 | 97.0 | 0.0 | -0.62 | 0.89 | 0.87 | 3.49 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36692 | 4645 | 24 | 0 | 23 | 0 | 0 | logfile |
✘ | 7RAV | 24387 | 2023-05-03 | 2021-07-02 | 3.3 | 2.69 | 3.21 | 2.4 | 0.004 | 0.93 | 0.0 | 0.05 | 15.84 | 0.01 | 2.224 | 16.68 | 1.17 | 16.7 | 82.9 | 0.4 | -3.36 | 0.72 | 0.71 | 2.18 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6215 | 773 | 1 | 0 | 1 | 0 | 0 | logfile |
✘ | 7Y7W | 33672 | 2023-05-03 | 2022-06-22 | 2.4 | 2.70 | 2.46 | 2.7 | 0.006 | 0.78 | 0.0 | 0.08 | 17.46 | 0.00 | 1.907 | 5.88 | 1.11 | 3.0 | 97.0 | 0.0 | 0.06 | 0.68 | 0.85 | 4.04 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4310 | 529 | 1 | 0 | 7 | 48 | 0 | logfile |
✘ | 7X28 | 32961 | 2023-05-15 | 2022-02-25 | 2.49 | 2.72 | — | 1.8 | 0.013 | 1.52 | 5.0 | 0.11 | 13.24 | 0.00 | 1.606 | 7.72 | 7.98 | 2.7 | 97.0 | 0.2 | 2.21 | 0.57 | 0.40 | 0.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 31583 | 4119 | 7 | 0 | 0 | 0 | 0 | logfile |
✘ | 6SD1 | 10145 | 2023-05-16 | 2019-07-26 | 2.6 | 2.74 | 2.55 | 2.7 | 0.003 | 0.53 | 0.0 | 0.04 | 12.42 | 0.00 | 2.149 | 8.45 | 0.00 | 4.3 | 95.7 | 0.0 | -2.90 | 0.74 | 0.84 | 4.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 39369 | 4983 | 33 | 0 | 0 | 0 | 0 | logfile |
✘ | 6JPA | 9868 | 2023-05-09 | 2019-03-26 | 2.6 | 2.76 | — | 2.8 | 0.013 | 1.51 | 3.0 | 0.12 | 17.16 | 0.01 | 1.921 | 38.35 | 11.40 | 8.8 | 89.5 | 1.7 | -3.83 | 0.54 | 0.61 | 1.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22232 | 2694 | 14 | 0 | 42 | 0 | 0 | logfile |
✘ | 7JMC | 22391 | 2023-05-17 | 2020-07-31 | 2.5 | 2.76 | 2.68 | 2.7 | 0.010 | 1.29 | 0.0 | 0.06 | 13.90 | 0.01 | 2.249 | 2.77 | 0.57 | 1.6 | 98.4 | 0.0 | 3.40 | 0.62 | 0.82 | 4.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 39828 | 2304 | 36 | 0 | 144 | 168 | 18576 | logfile |
✘ | 7VZ8 | 32222 | 2023-05-15 | 2021-11-15 | 2.7 | 2.77 | — | 2.7 | 0.006 | 0.81 | 0.0 | 0.04 | 18.09 | 0.01 | 2.199 | 7.97 | 1.35 | 3.8 | 96.1 | 0.1 | 1.51 | 0.76 | 0.91 | 3.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 39019 | 4648 | 64 | 0 | 21 | 345 | 0 | logfile |
✘ | 7T4M | 25680 | 2023-05-16 | 2021-12-10 | 2.48 | 2.77 | 2.55 | 2.7 | 0.001 | 0.38 | 0.0 | 0.04 | 9.69 | 0.00 | 2.253 | 4.85 | 0.97 | 1.6 | 98.4 | 0.0 | 1.34 | 0.72 | 0.86 | 4.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 39054 | 4854 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 6Q05 | 20543 | 2023-05-12 | 2019-08-01 | 2.8 | 2.78 | — | 2.7 | 0.025 | 2.06 | 27.0 | 0.16 | 11.50 | 0.01 | 2.255 | 2.06 | 0.91 | 1.7 | 98.3 | 0.1 | 0.58 | 0.76 | 0.80 | 4.27 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28977 | 3477 | 42 | 0 | 144 | 195 | 0 | logfile |
✘ | 7D8X | 30614 | 2023-05-05 | 2020-10-11 | 2.6 | 2.78 | — | 2.7 | 0.010 | 1.31 | 0.0 | 0.06 | 11.16 | 0.01 | 2.221 | 3.29 | 0.18 | 5.1 | 94.9 | 0.0 | -3.36 | 0.70 | 0.86 | 4.37 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10928 | 1314 | 13 | 0 | 28 | 0 | 0 | logfile |
✘ | 7X08 | 32920 | 2023-05-15 | 2022-02-21 | 2.7 | 2.78 | — | 2.8 | 0.009 | 0.96 | 0.0 | 0.10 | 17.17 | 0.01 | 1.910 | 14.34 | 10.68 | 8.4 | 90.6 | 0.9 | -2.76 | 0.63 | 0.76 | 2.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36396 | 4572 | 36 | 0 | 81 | 0 | 0 | logfile |
✘ | 7W92 | 32359 | 2023-05-10 | 2021-12-09 | 3.1 | 2.79 | — | 3.3 | 0.003 | 0.67 | 0.0 | 0.05 | 13.05 | 0.01 | 2.306 | 2.89 | 0.11 | 3.7 | 96.3 | 0.0 | -4.34 | 0.80 | 0.76 | 2.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25071 | 3206 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 7VWL | 32155 | 2023-05-16 | 2021-11-11 | 2.7 | 2.79 | — | 2.8 | 0.007 | 0.88 | 2.0 | 0.05 | 15.56 | 0.01 | 2.079 | 12.06 | 0.20 | 4.0 | 95.9 | 0.1 | 1.41 | 0.74 | 0.87 | 3.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 39049 | 4652 | 62 | 0 | 22 | 345 | 0 | logfile |
✘ | 8H0X | 34417 | 2023-05-10 | 2022-09-30 | 2.57 | 2.80 | 2.62 | 2.7 | 0.008 | 0.93 | 0.0 | 0.06 | 12.74 | 0.01 | 2.257 | 1.76 | 1.11 | 3.3 | 96.7 | 0.0 | -0.82 | 0.81 | 0.86 | 3.97 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25122 | 3117 | 6 | 0 | 48 | 0 | 0 | logfile |
✘ | 6D6R | 7809 | 2023-05-13 | 2018-04-22 | 3.45 | 2.80 | — | 3.3 | 0.008 | 0.68 | 0.0 | 0.04 | 10.12 | 0.00 | 1.816 | 9.28 | 0.03 | 10.0 | 90.0 | 0.0 | -4.48 | 0.83 | 0.79 | 2.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 31639 | 3889 | 17 | 61 | 3 | 0 | 0 | logfile |
✘ | 8HK1 | 34841 | 2023-05-12 | 2022-11-24 | 2.7 | 2.81 | 2.75 | 2.9 | 0.005 | 0.89 | 3.0 | 0.13 | 16.22 | 0.01 | 1.262 | 10.95 | 5.96 | 3.6 | 96.3 | 0.1 | -2.81 | 0.56 | 0.61 | 2.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30236 | 4205 | 24 | 148 | 5 | 0 | 0 | logfile |
✘ | 6RW6 | 10033 | 2023-05-16 | 2019-06-04 | 2.75 | 2.81 | — | 2.7 | 0.011 | 0.96 | 0.0 | 0.06 | 9.75 | 0.01 | 2.148 | 4.16 | 0.00 | 2.2 | 97.8 | 0.0 | -3.68 | 0.85 | 0.87 | 4.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 98645 | 12425 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 7S4K | 24829 | 2023-05-17 | 2021-09-09 | 2.36 | 2.82 | — | 2.6 | 0.009 | 1.05 | 3.0 | 0.05 | 18.91 | 0.00 | 1.448 | 13.70 | 3.29 | 5.4 | 94.4 | 0.2 | 0.71 | 0.74 | 0.82 | 4.62 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22589 | 2577 | 27 | 0 | 63 | 110 | 0 | logfile |