Table showing results for May 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6X1A	21994	2023-05-05	2020-05-18	2.5	1.99	2.50	2.6	0.006	0.93	0.0	0.07	15.41	0.00	2.140	14.37	3.79	3.9	96.1	0.0	-3.15	0.51	0.71	2.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10140	1262	5	0	1	23	0	logfile
✘	7NVL	12605	2023-05-07	2021-03-15	2.5	2.63	2.55	2.6	0.005	0.78	0.0	0.05	16.49	0.00	1.915	8.72	1.56	3.2	96.7	0.0	-2.02	0.60	0.73	3.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	66477	8626	50	0	48	27	0	logfile
✘	7T4M	25680	2023-05-16	2021-12-10	2.48	2.77	2.55	2.7	0.001	0.38	0.0	0.04	9.69	0.00	2.253	4.85	0.97	1.6	98.4	0.0	1.34	0.72	0.86	4.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	39054	4854	12	0	0	0	0	logfile
✘	6SD1	10145	2023-05-16	2019-07-26	2.6	2.74	2.55	2.7	0.003	0.53	0.0	0.04	12.42	0.00	2.149	8.45	0.00	4.3	95.7	0.0	-2.90	0.74	0.84	4.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	39369	4983	33	0	0	0	0	logfile
✘	8CSR	26968	2023-05-09	2022-05-13	2.54	2.48	2.56	2.6	0.004	0.65	0.0	0.38	14.52	0.01	1.910	2.68	0.00	1.7	98.3	0.0	1.19	0.72	0.78	3.16	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	69868	6354	42	854	43	46	0	logfile
✘	7SCB	25032	2023-05-15	2021-09-27	2.5	3.49	2.56	3.0	0.007	1.51	3.0	0.08	17.27	0.02	2.465	3.44	2.69	3.6	96.2	0.2	-4.74	0.88	0.84	1.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	37229	4743	54	0	25	0	0	logfile
✘	6T0N	10356	2023-05-06	2019-10-03	2.54	2.64	2.56	2.6	0.005	0.69	0.0	0.05	14.69	0.01	2.105	3.18	4.90	4.3	95.4	0.2	-2.43	0.73	0.89	4.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14598	1703	12	29	2	268	0	logfile
✘	7TU8	26129	2023-05-16	2022-02-02	2.6	2.05	2.59	2.0	0.011	0.81	0.0	0.05	13.32	0.00	1.874	2.75	0.00	2.8	97.0	0.2	0.45	0.81	0.80	4.16	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20232	2604	12	0	24	0	0	logfile
✘	8F0A	28754	2023-05-07	2022-11-02	2.6	3.77	2.61	3.4	0.031	1.77	0.0	0.13	9.86	0.01	2.388	0.56	0.00	0.8	99.2	0.0	0.72	0.68	0.66	4.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18060	1212	9	0	0	0	9189	logfile
✘	8B14	15802	2023-05-08	2022-09-09	2.6	2.13	2.61	2.0	0.007	0.68	0.0	0.05	16.80	0.01	2.163	5.79	0.79	2.8	97.2	0.0	0.27	0.80	0.81	5.41	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18810	1243	3	0	2	0	9112	logfile
✘	8CYD	27075	2023-05-12	2022-05-23	2.6	3.24	2.62	3.0	0.002	0.51	0.0	0.04	12.52	0.01	1.930	6.47	0.32	4.9	94.7	0.4	0.04	0.77	0.79	2.24	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	28454	3663	6	0	0	0	0	logfile
✘	8H0X	34417	2023-05-10	2022-09-30	2.57	2.80	2.62	2.7	0.008	0.93	0.0	0.06	12.74	0.01	2.257	1.76	1.11	3.3	96.7	0.0	-0.82	0.81	0.86	3.97	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25122	3117	6	0	48	0	0	logfile
✘	7X0X	32928	2023-05-12	2022-02-22	2.56	3.09	2.66	3.0	0.008	1.00	0.0	0.06	15.31	0.01	2.280	3.83	1.15	4.7	95.3	0.0	-5.09	0.74	0.82	4.42	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15680	1904	8	0	4	0	0	logfile
✘	8DM9	27531	2023-05-12	2022-07-08	2.56	3.10	2.68	2.8	0.005	0.88	0.0	0.06	13.23	0.01	2.264	3.60	0.15	2.0	97.9	0.1	-0.21	0.78	0.81	2.41	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30004	3689	26	0	62	0	0	logfile
✘	7Z17	14443	2023-05-15	2022-02-24	2.57	2.96	2.68	2.9	0.005	0.53	0.0	0.04	10.98	0.00	1.726	6.80	0.84	2.9	97.1	0.0	1.01	0.72	0.77	3.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	37592	2432	14	0	5	0	18669	logfile
✘	7JMC	22391	2023-05-17	2020-07-31	2.5	2.76	2.68	2.7	0.010	1.29	0.0	0.06	13.90	0.01	2.249	2.77	0.57	1.6	98.4	0.0	3.40	0.62	0.82	4.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	39828	2304	36	0	144	168	18576	logfile
✘	7XDB	33142	2023-05-12	2022-03-26	2.62	2.82	2.70	2.8	0.004	0.64	0.0	0.05	12.28	0.01	2.111	9.82	0.00	1.9	98.1	0.0	0.54	0.69	0.83	3.23	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30189	3779	23	0	38	0	0	logfile
✘	8G99	29862	2023-05-12	2023-02-21	2.8	3.52	2.71	3.0	0.003	0.47	0.0	0.04	16.85	0.00	2.205	2.32	0.00	3.1	96.9	0.0	0.58	0.86	0.86	4.21	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30205	1875	5	0	3	0	15109	logfile
✘	7TU6	26127	2023-05-16	2022-02-02	2.7	2.11	2.73	2.0	0.007	0.79	6.0	0.06	13.43	0.01	1.892	3.29	0.62	3.0	97.0	0.0	0.38	0.77	0.76	2.74	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20028	2580	12	0	18	0	0	logfile
✘	8HK1	34841	2023-05-12	2022-11-24	2.7	2.81	2.75	2.9	0.005	0.89	3.0	0.13	16.22	0.01	1.262	10.95	5.96	3.6	96.3	0.1	-2.81	0.56	0.61	2.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30236	4205	24	148	5	0	0	logfile

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