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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7NNL | 12478 | 2024-01-19 | 2021-02-25 | 3.1 | 3.27 | 3.06 | 3.2 | 0.006 | 0.91 | 0.0 | 0.05 | 16.46 | 0.01 | 2.230 | 6.05 | 0.00 | 3.7 | 96.3 | 0.0 | -1.05 | 0.70 | 0.85 | 2.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11099 | 1456 | 6 | 0 | 13 | 0 | 0 | logfile |
✘ | 6S6B | 10102 | 2024-01-20 | 2019-07-02 | 2.75 | 3.35 | 3.07 | 3.2 | 0.005 | 0.76 | 0.0 | 0.05 | 14.86 | 0.00 | 1.961 | 19.06 | 0.15 | 15.3 | 84.3 | 0.4 | -5.13 | 0.77 | 0.82 | 2.59 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 66914 | 8194 | 39 | 51 | 1 | 0 | 0 | logfile |
✘ | 8ERC | 28552 | 2024-01-17 | 2022-10-11 | 3.7 | 3.47 | 3.08 | 3.7 | 0.003 | 0.67 | 0.0 | 0.04 | 12.91 | 0.00 | 2.115 | 8.25 | 0.00 | 2.3 | 97.7 | 0.0 | 1.99 | 0.51 | 0.65 | 1.22 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3510 | 441 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 8iLR | 35543 | 2024-01-19 | 2023-03-04 | 3.05 | 3.24 | 3.08 | 3.3 | 0.003 | 0.45 | 1.0 | 0.04 | 15.95 | 0.00 | 1.967 | 27.72 | 0.35 | 4.5 | 95.5 | 0.1 | 0.10 | 0.73 | 0.82 | 2.54 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10374 | 1253 | 3 | 0 | 1 | 7 | 0 | logfile |
✘ | 8SL0 | 40570 | 2024-01-17 | 2023-04-20 | 3.3 | 4.17 | 3.09 | 3.8 | 0.003 | 0.62 | 0.0 | 0.05 | 16.00 | 0.00 | 2.201 | 7.96 | 0.00 | 8.4 | 91.2 | 0.4 | -1.67 | 0.42 | 0.83 | 1.40 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 1737 | 228 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 7PQ5 | 13587 | 2024-01-18 | 2021-09-16 | 3.17 | 3.58 | 3.09 | 3.4 | 0.005 | 0.85 | 0.0 | 0.05 | 15.55 | 0.01 | 2.255 | 3.50 | 2.82 | 4.5 | 95.3 | 0.2 | -0.13 | 0.85 | 0.87 | 5.15 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8512 | 1047 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 6GB2 | 4370 | 2024-01-18 | 2018-04-13 | 3.2 | 3.20 | 3.10 | 3.1 | 0.007 | 1.14 | 0.0 | 0.05 | 20.45 | 0.01 | 1.865 | 9.38 | 10.13 | 4.0 | 95.9 | 0.2 | -2.82 | 0.85 | 0.89 | 2.34 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 111109 | 9312 | 78 | 1687 | 225 | 2 | 0 | logfile |
✘ | 8DTB | 27695 | 2024-01-20 | 2022-07-25 | 3.14 | 3.27 | 3.11 | 3.2 | 0.003 | 0.62 | 0.0 | 0.04 | 18.08 | 0.00 | 2.175 | 9.05 | 0.99 | 1.9 | 98.1 | 0.0 | 1.18 | 0.66 | 0.74 | 0.59 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13724 | 1765 | 9 | 0 | 7 | 0 | 0 | logfile |
✘ | 8D64 | 27216 | 2024-01-19 | 2022-06-06 | 3.14 | 3.25 | 3.11 | 3.2 | 0.007 | 0.81 | 0.0 | 0.06 | 13.69 | 0.01 | 2.275 | 7.13 | 0.00 | 6.6 | 93.4 | 0.0 | -3.61 | 0.72 | 0.84 | 3.27 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12545 | 1540 | 10 | 0 | 0 | 0 | 0 | logfile |
✘ | 8DMB | 27533 | 2024-01-20 | 2022-07-08 | 3.1 | 3.10 | 3.12 | 3.1 | 0.005 | 0.91 | 0.0 | 0.05 | 22.76 | 0.01 | 2.091 | 0.28 | 0.74 | 2.5 | 97.5 | 0.0 | 0.39 | 0.69 | 0.81 | 4.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14225 | 328 | 5 | 275 | 2 | 0 | 5728 | logfile |
✘ | 7oUG | 13076 | 2024-01-20 | 2021-06-11 | 3.1 | 2.33 | 3.12 | 1.7 | 0.004 | 0.74 | 0.0 | 0.04 | 17.65 | 0.01 | 1.769 | 5.66 | 0.14 | 2.4 | 97.6 | 0.0 | 0.28 | 0.78 | 0.75 | 2.41 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15090 | 1664 | 16 | 80 | 10 | 8 | 0 | logfile |
✘ | 7XDA | 33140 | 2024-01-20 | 2022-03-26 | 2.98 | 3.15 | 3.14 | 3.1 | 0.005 | 0.54 | 0.0 | 0.04 | 16.34 | 0.00 | 1.978 | 4.13 | 1.85 | 6.3 | 93.6 | 0.1 | -3.63 | 0.66 | 0.84 | 3.84 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15729 | 1071 | 5 | 0 | 0 | 0 | 7646 | logfile |
✘ | 8H0P | 34413 | 2024-01-18 | 2022-09-30 | 3.15 | 2.98 | 3.14 | 3.2 | 0.001 | 0.40 | 0.0 | 0.04 | 7.54 | 0.00 | 2.208 | 5.68 | 0.10 | 1.2 | 98.8 | 0.0 | -2.49 | 0.52 | 0.65 | 1.60 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8932 | 1137 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 8JPo | 36485 | 2024-01-19 | 2023-06-12 | 3.4 | 3.43 | 3.16 | 3.4 | 0.004 | 0.63 | 0.0 | 0.04 | 12.94 | 0.00 | 2.267 | 6.38 | 0.00 | 2.8 | 97.2 | 0.0 | 0.44 | 0.75 | 0.90 | 3.16 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11476 | 1466 | 4 | 0 | 8 | 0 | 0 | logfile |
✘ | 7ZPo | 14859 | 2024-01-20 | 2022-04-28 | 3.24 | 2.81 | 3.17 | 3.1 | 0.004 | 0.73 | 0.0 | 0.05 | 16.16 | 0.00 | 2.053 | 10.37 | 0.00 | 1.3 | 98.7 | 0.0 | 1.71 | 0.65 | 0.82 | 2.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15102 | 1932 | 20 | 0 | 16 | 0 | 0 | logfile |
✘ | 8F7X | 28912 | 2024-01-18 | 2022-11-20 | 3.28 | 3.38 | 3.18 | 3.4 | 0.004 | 0.88 | 0.0 | 0.05 | 8.64 | 0.01 | 2.274 | 2.87 | 0.10 | 2.1 | 97.9 | 0.0 | 0.54 | 0.59 | 0.78 | 2.02 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8902 | 1145 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 7Y89 | 33682 | 2024-01-18 | 2022-06-23 | 3.02 | 3.56 | 3.18 | 3.4 | 0.007 | 0.76 | 0.0 | 0.05 | 14.49 | 0.00 | 2.092 | 11.46 | 1.29 | 8.2 | 91.5 | 0.4 | -1.39 | 0.69 | 0.85 | 2.94 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8641 | 1110 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 8H0Q | 34414 | 2024-01-18 | 2022-09-30 | 3.3 | 3.78 | 3.20 | 3.7 | 0.019 | 0.59 | 0.0 | 0.09 | 9.28 | 0.00 | 2.260 | 7.81 | 0.62 | 1.0 | 99.0 | 0.0 | -1.95 | 0.63 | 0.72 | 0.98 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8949 | 1134 | 7 | 0 | 3 | 0 | 0 | logfile |
✘ | 7R5M | 14331 | 2024-01-19 | 2022-02-11 | 3.3 | 3.09 | 3.20 | 3.2 | 0.006 | 0.94 | 0.0 | 0.06 | 14.64 | 0.00 | 2.411 | 1.26 | 0.80 | 4.6 | 95.4 | 0.0 | -0.79 | 0.70 | 0.80 | 2.46 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11295 | 1491 | 9 | 0 | 0 | 0 | 0 | logfile |
✘ | 8J1Q | 35930 | 2024-01-17 | 2023-04-13 | 3.3 | 4.10 | 3.20 | 3.9 | 0.030 | 1.93 | 0.0 | 0.05 | 28.59 | 0.00 | 2.043 | 8.92 | 0.28 | 7.1 | 92.9 | 0.0 | -1.02 | 0.73 | 0.64 | 2.45 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5447 | 427 | 5 | 90 | 1 | 0 | 0 | logfile |