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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8BL2 | 16100 | 2024-01-18 | 2022-11-09 | 2.3 | 2.29 | 2.26 | 2.2 | 0.005 | 0.59 | 0.0 | 0.04 | 16.84 | 0.00 | 1.872 | 11.53 | 1.01 | 1.2 | 98.8 | 0.0 | 0.70 | 0.76 | 0.75 | 3.19 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 57128 | 7336 | 42 | 0 | 42 | 2780 | 0 | logfile |
✘ | 7UZE | 26886 | 2024-01-20 | 2022-05-09 | 2.4 | 2.27 | 2.42 | 2.3 | 0.003 | 0.58 | 0.0 | 0.04 | 14.97 | 0.00 | 2.040 | 3.56 | 0.68 | 3.0 | 96.6 | 0.4 | 1.69 | 0.66 | 0.88 | 6.32 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14969 | 988 | 12 | 0 | 4 | 113 | 7392 | logfile |
✘ | 8CSW | 26973 | 2024-01-17 | 2022-05-13 | 2.5 | 2.22 | 2.46 | 2.3 | 0.007 | 0.86 | 0.0 | 0.06 | 14.46 | 0.01 | 2.219 | 5.03 | 2.33 | 1.2 | 98.8 | 0.0 | 0.83 | 0.64 | 0.88 | 6.02 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5332 | 657 | 1 | 0 | 0 | 165 | 0 | logfile |
✘ | 8PKD | 17735 | 2024-01-17 | 2023-06-26 | 2.33 | 2.42 | 2.31 | 2.4 | 0.003 | 0.44 | 0.0 | 0.04 | 15.00 | 0.00 | 2.246 | 3.95 | 0.00 | 2.7 | 97.3 | 0.0 | 1.55 | 0.65 | 0.81 | 4.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4844 | 600 | 8 | 0 | 0 | 16 | 0 | logfile |
✘ | 7DYR | 30923 | 2024-01-20 | 2021-01-22 | 2.28 | 2.34 | — | 2.5 | 0.008 | 0.78 | 0.0 | 0.05 | 15.45 | 0.01 | 2.205 | 6.01 | 3.56 | 7.2 | 92.5 | 0.3 | 0.10 | 0.68 | 0.76 | 2.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13326 | 1791 | 12 | 0 | 3 | 0 | 0 | logfile |
✘ | 8E49 | 27884 | 2024-01-19 | 2022-08-17 | 2.05 | 2.78 | 2.50 | 2.5 | 0.005 | 0.42 | 0.0 | 0.03 | 22.35 | 0.02 | 1.945 | 1.31 | 0.85 | 4.6 | 95.4 | 0.0 | 0.91 | 0.71 | 0.91 | 5.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 115871 | 1179 | 11 | 3016 | 1 | 0 | 41885 | logfile |
✘ | 7NF7 | 12297 | 2024-01-18 | 2021-02-05 | 2.68 | 2.40 | 2.58 | 2.6 | 0.006 | 0.71 | 0.0 | 0.05 | 17.23 | 0.00 | 2.336 | 5.26 | 6.53 | 4.7 | 95.1 | 0.2 | -3.11 | 0.69 | 0.83 | 4.47 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9642 | 1150 | 8 | 0 | 18 | 0 | 0 | logfile |
✘ | 7NVL | 12605 | 2024-01-20 | 2021-03-15 | 2.5 | 2.63 | 2.55 | 2.6 | 0.005 | 0.78 | 0.0 | 0.05 | 16.49 | 0.00 | 1.915 | 8.72 | 1.56 | 3.2 | 96.7 | 0.0 | -2.02 | 0.60 | 0.73 | 3.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 66477 | 8626 | 50 | 0 | 48 | 27 | 0 | logfile |
✘ | 7PLS | 13499 | 2024-01-20 | 2021-09-01 | 2.49 | 2.49 | — | 2.6 | 0.003 | 0.58 | 0.0 | 0.05 | 16.35 | 0.00 | 2.275 | 4.66 | 1.33 | 5.6 | 94.4 | 0.0 | 0.35 | 0.74 | 0.86 | 5.65 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14224 | 1724 | 12 | 0 | 4 | 52 | 0 | logfile |
✘ | 6YJ4 | 10815 | 2024-01-20 | 2020-04-02 | 2.7 | 2.35 | 2.73 | 2.6 | 0.011 | 1.10 | 0.0 | 0.65 | 17.24 | 0.01 | 2.031 | 2.88 | 0.03 | 4.1 | 95.8 | 0.0 | -2.17 | 0.58 | 0.79 | 4.22 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 66311 | 8126 | 94 | 0 | 50 | 275 | 0 | logfile |
✘ | 8CE7 | 16600 | 2024-01-19 | 2023-02-01 | 2.7 | 2.34 | 2.46 | 2.7 | 0.010 | 1.47 | 12.0 | 0.09 | 13.19 | 0.01 | 0.000 | 16.71 | 3.33 | 9.0 | 91.0 | 0.0 | -3.63 | 0.44 | 0.73 | 6.36 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10512 | 1512 | 24 | 0 | 0 | 0 | 0 | logfile |
✘ | 8H87 | 34531 | 2024-01-18 | 2022-10-21 | 2.53 | 2.73 | 2.50 | 2.7 | 0.011 | 1.55 | 0.0 | 0.08 | 18.83 | 0.02 | 2.300 | 4.49 | 0.91 | 2.3 | 97.7 | 0.0 | -1.32 | 0.58 | 0.79 | 4.94 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7083 | 777 | 6 | 0 | 48 | 147 | 0 | logfile |
✘ | 8F54 | 28860 | 2024-01-20 | 2022-11-11 | 2.5 | 2.67 | 2.56 | 2.7 | 0.003 | 0.45 | 0.0 | 0.03 | 11.59 | 0.00 | 2.491 | 0.57 | 0.00 | 0.0 | 100.0 | 0.0 | 3.06 | 0.68 | 0.76 | 3.44 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 66960 | 4020 | 60 | 0 | 0 | 0 | 33840 | logfile |
✘ | 8CST | 26970 | 2024-01-20 | 2022-05-13 | 2.85 | 2.57 | 2.87 | 2.7 | 0.005 | 0.67 | 0.0 | 0.39 | 19.05 | 0.01 | 1.938 | 2.58 | 0.00 | 1.4 | 98.6 | 0.0 | 1.18 | 0.69 | 0.78 | 3.45 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 66351 | 5810 | 39 | 889 | 41 | 0 | 0 | logfile |
✘ | 8H86 | 34530 | 2024-01-18 | 2022-10-21 | 2.56 | 2.71 | 2.58 | 2.7 | 0.014 | 1.56 | 0.0 | 0.08 | 18.47 | 0.03 | 2.296 | 6.79 | 0.45 | 4.0 | 96.0 | 0.0 | -0.67 | 0.46 | 0.73 | 5.00 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7080 | 765 | 6 | 0 | 48 | 63 | 0 | logfile |
✘ | 8JR9 | 36593 | 2024-01-18 | 2023-06-16 | 2.57 | 2.48 | 2.53 | 2.7 | 0.005 | 0.65 | 0.0 | 0.04 | 17.65 | 0.00 | 2.240 | 5.96 | 0.24 | 2.2 | 97.8 | 0.0 | 1.80 | 0.57 | 0.74 | 2.49 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7893 | 1014 | 5 | 0 | 1 | 0 | 0 | logfile |
✘ | 8AZS | 15770 | 2024-01-18 | 2022-09-06 | 2.9 | 2.78 | 2.55 | 2.8 | 0.011 | 1.50 | 0.0 | 0.12 | 16.09 | 0.01 | 0.017 | 1346.55 | 0.00 | 3.1 | 96.9 | 0.0 | -1.98 | 0.27 | 0.40 | 5.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9036 | 1224 | 36 | 0 | 0 | 0 | 0 | logfile |
✘ | 8HMP | 34902 | 2024-01-18 | 2022-12-05 | 2.77 | 2.61 | 2.82 | 2.8 | 0.005 | 0.92 | 0.0 | 0.06 | 14.08 | 0.01 | 2.228 | 5.94 | 0.00 | 3.4 | 96.6 | 0.0 | -0.73 | 0.63 | 0.79 | 3.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8319 | 1045 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 7XMV | 33306 | 2024-01-20 | 2022-04-27 | 2.6 | 2.75 | 2.70 | 2.8 | 0.015 | 0.96 | 0.0 | 0.05 | 15.36 | 0.04 | 1.853 | 5.34 | 1.18 | 3.6 | 96.4 | 0.0 | -0.87 | 0.72 | 0.86 | 4.88 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15228 | 1842 | 18 | 0 | 30 | 810 | 0 | logfile |
✘ | 6ZKT | 11261 | 2024-01-20 | 2020-06-30 | 2.8 | 2.58 | — | 2.8 | 0.008 | 1.00 | 0.0 | 1.03 | 12.20 | 0.01 | 2.200 | 4.93 | 0.07 | 3.9 | 96.1 | 0.0 | -2.94 | 0.57 | 0.81 | 4.03 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 66294 | 8070 | 67 | 0 | 36 | 0 | 0 | logfile |