Table showing results for May 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7WPA	32680	2023-05-13	2022-01-23	2.77	2.26	—	2.1	0.004	0.78	2.0	0.05	14.25	0.01	2.327	3.39	0.45	5.4	94.5	0.0	-4.08	0.72	0.73	2.35	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30444	3774	20	0	47	0	0	logfile
✘	8A57	15161	2023-05-15	2022-06-14	2.3	1.87	2.34	2.1	0.011	1.72	2.0	0.12	15.42	0.02	1.972	3.26	2.49	7.1	91.7	1.2	-3.32	0.61	0.75	3.99	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	92760	3527	39	3022	167	0	0	logfile
✘	7Z31	14470	2023-05-16	2022-03-01	2.76	2.15	—	2.1	0.006	0.70	0.0	0.05	15.67	0.01	1.998	13.10	6.49	7.1	92.9	0.1	-1.15	0.55	0.75	3.18	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	40156	5040	25	0	29	1	0	logfile
✘	7ZGU	14713	2023-05-16	2022-04-04	3.4	2.24	3.39	2.1	0.003	0.68	0.0	0.04	14.94	0.00	2.201	11.55	0.55	6.2	93.8	0.0	-0.91	0.69	0.68	1.58	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	38940	4854	12	0	6	0	0	logfile
✘	7WYB	32890	2023-05-04	2022-02-15	2.97	2.33	—	2.1	0.005	0.80	0.0	0.05	12.35	0.00	2.176	5.06	0.00	7.0	93.0	0.0	-1.33	0.66	0.61	1.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8757	1115	5	0	0	0	0	logfile
✘	7TF7	25864	2023-05-16	2022-01-06	2.13	2.24	—	2.2	0.004	0.61	0.0	0.04	15.42	0.00	2.187	5.57	1.43	2.5	97.4	0.1	1.01	0.47	0.70	5.40	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	39976	4980	12	0	0	0	0	logfile
✘	7RBU	24402	2023-05-03	2021-07-06	3.7	2.38	—	2.2	0.006	0.80	0.0	0.05	12.53	0.00	2.167	6.95	0.00	9.1	90.7	0.2	-2.50	0.74	0.77	4.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4107	510	6	0	7	0	0	logfile
✘	8HGo	34744	2023-05-04	2022-11-15	3.31	2.35	3.32	2.2	0.004	0.71	0.0	0.05	7.94	0.01	2.284	4.45	0.00	8.0	91.8	0.2	-3.74	0.71	0.68	2.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9227	1178	6	0	8	0	0	logfile
✘	7WK0	32554	2023-05-04	2022-01-08	3.32	2.37	—	2.2	0.004	0.65	0.0	0.04	11.04	0.01	2.233	9.59	7.71	12.2	87.5	0.2	-4.96	0.75	0.75	3.28	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9724	1264	8	0	2	0	0	logfile
✘	6CVM	7770	2023-05-15	2018-03-28	1.9	2.49	1.94	2.3	0.012	0.92	0.0	0.06	10.16	0.01	2.053	3.70	0.00	2.7	97.3	0.0	-1.16	0.81	0.91	7.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	37062	4084	12	0	20	4194	0	logfile
✘	7VCF	31890	2023-05-16	2021-09-02	2.5	2.41	2.38	2.3	0.007	1.08	2.0	0.13	14.50	0.01	2.057	3.71	0.19	5.5	94.3	0.2	-1.21	0.79	0.81	3.52	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	39626	4841	20	0	7	2	0	logfile
✘	7Z18	14444	2023-05-15	2022-02-24	1.98	2.40	2.04	2.3	0.008	0.94	0.0	0.06	15.02	0.01	1.726	3.36	1.19	1.9	98.1	0.0	1.45	0.79	0.82	5.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	37659	2432	18	0	10	2	18660	logfile
✘	7Z15	14441	2023-05-17	2022-02-24	1.93	2.40	1.98	2.3	0.012	1.01	9.0	0.06	15.49	0.01	1.723	3.87	0.83	1.6	98.4	0.0	1.32	0.83	0.86	6.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	46112	2888	32	0	16	1171	22357	logfile
✘	7P7J	13237	2023-05-15	2021-07-19	2.7	2.61	—	2.3	0.005	0.77	0.0	1.47	14.69	0.01	2.212	4.92	1.25	2.4	97.5	0.0	-0.28	0.91	0.90	3.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	37448	4719	24	0	28	0	0	logfile
✘	6ZK9	11241	2023-05-12	2020-06-30	2.3	2.55	—	2.4	0.008	1.05	0.0	1.58	10.47	0.01	2.257	5.07	0.07	3.2	96.8	0.0	-2.52	0.78	0.92	6.57	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29587	3480	45	0	19	1472	0	logfile
✘	7ZL1	14774	2023-05-11	2022-04-13	2.5	2.06	2.45	2.4	0.007	0.88	0.0	0.06	14.64	0.01	2.033	2.59	0.65	5.7	93.3	1.0	-0.02	0.73	0.86	6.02	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	27257	1720	24	0	8	379	13574	logfile
✘	7VB7	31874	2023-05-12	2021-08-30	2.4	2.41	—	2.4	0.007	0.77	1.0	0.05	16.42	0.01	1.988	6.35	1.28	3.0	96.9	0.1	0.48	0.76	0.90	5.52	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29279	3543	45	0	19	736	0	logfile
✘	7DD9	30650	2023-05-15	2020-10-28	2.4	2.49	2.37	2.4	0.007	0.71	0.0	0.05	15.88	0.00	1.932	8.69	1.93	7.1	92.9	0.0	-1.19	0.79	0.87	4.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	37149	4516	12	0	12	949	0	logfile
✘	7RAV	24387	2023-05-03	2021-07-02	3.3	2.69	3.21	2.4	0.004	0.93	0.0	0.05	15.84	0.01	2.224	16.68	1.17	16.7	82.9	0.4	-3.36	0.72	0.71	2.18	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6215	773	1	0	1	0	0	logfile
✘	7E8C	31014	2023-05-16	2021-03-01	3.16	2.56	3.11	2.5	0.006	0.98	3.0	0.06	16.36	0.01	1.508	13.70	9.23	7.7	92.0	0.3	-1.93	0.71	0.70	2.21	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	40225	5218	21	0	0	0	0	logfile

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