Table showing results for May 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	5GJQ	9511	2023-05-16	2016-07-01	4.35	4.02	—	3.8	0.016	1.83	29.0	0.09	16.70	0.01	1.073	47.82	10.02	11.3	84.5	4.2	-4.17	0.79	0.73	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	98461	13520	54	0	6	0	0	logfile
✘	5GJR	9512	2023-05-16	2016-07-01	3.5	3.65	—	3.5	0.013	1.53	38.0	0.08	16.77	0.01	1.114	63.72	11.56	13.2	81.8	5.0	-4.66	0.71	0.77	1.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	142753	19945	76	0	12	0	0	logfile
✘	5GJW	9515	2023-05-09	2016-07-02	3.9	4.02	—	4.0	0.012	1.51	20.0	0.08	11.56	0.01	1.844	12.82	1.50	12.8	85.5	1.7	-5.28	0.55	0.80	1.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21561	2676	14	0	29	0	0	logfile
✘	5GJV	9513	2023-05-09	2016-07-02	3.6	3.69	—	3.7	0.013	1.62	32.0	0.08	14.85	0.01	1.695	18.01	4.57	11.6	86.4	2.0	-5.08	0.54	0.79	2.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21904	2661	14	0	43	0	0	logfile
✘	5GKZ	9519	2023-05-04	2016-07-07	4.0	4.10	—	4.0	0.019	1.71	36.0	0.11	11.29	0.01	1.755	15.04	0.51	6.5	91.2	2.3	-2.89	0.72	0.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	111000	15068	12	0	4	0	0	logfile
✘	5GL0	9520	2023-05-04	2016-07-07	4.2	4.40	—	4.2	0.018	1.72	17.0	0.10	11.34	0.01	1.957	21.25	0.51	6.5	90.6	2.9	-2.58	0.74	0.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	111000	15068	12	0	4	0	0	logfile
✘	5GKY	9518	2023-05-04	2016-07-07	3.8	4.18	—	4.0	0.017	1.70	19.0	0.10	11.29	0.01	1.789	19.04	0.51	5.8	91.8	2.5	-2.71	0.73	0.79	1.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	111036	15068	12	0	4	0	0	logfile
✘	5GM6	9524	2023-05-04	2016-07-12	3.5	3.61	—	3.6	0.012	1.33	11.0	0.08	13.79	0.01	1.303	18.95	3.36	6.6	92.1	1.2	-3.54	0.58	0.83	2.50	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	112064	12796	55	361	881	0	0	logfile
✘	5GMK	9525	2023-05-11	2016-07-14	3.4	3.52	—	3.5	0.012	1.25	16.0	0.07	13.99	0.01	1.378	19.35	2.77	7.7	91.2	1.0	-3.71	0.47	0.53	1.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	75273	8026	51	404	981	0	0	logfile
✘	5Lii	4053	2023-05-02	2016-07-14	3.8	2.99	—	3.9	0.015	2.41	6.0	0.14	12.69	0.01	1.855	42.83	1.41	16.9	81.9	1.2	-6.10	0.55	0.70	3.46	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3098	433	1	0	0	0	0	logfile
✘	5LKH	4068	2023-05-15	2016-07-22	3.46	5.27	—	11.0	0.018	2.37	65.0	0.12	12.66	0.02	2.255	87.12	1.96	3.4	95.2	1.4	-0.27	0.38	0.17	-0.03	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	37345	4740	5	0	0	0	0	logfile
✘	5GoA	9529	2023-05-17	2016-07-26	4.2	4.52	—	4.2	0.022	1.86	60.0	0.12	12.40	0.01	1.505	7.29	1.03	8.5	90.9	0.7	-4.96	0.81	0.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	105072	13692	8	0	4	0	0	logfile
✘	5Go9	9528	2023-05-17	2016-07-26	4.4	4.59	—	4.4	0.020	1.79	36.0	0.11	12.27	0.01	2.185	7.55	0.88	8.7	90.7	0.6	-4.90	0.78	0.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	105068	13692	8	0	4	0	0	logfile
✘	5T4D	8354	2023-05-06	2016-08-29	3.0	3.12	2.96	3.1	0.010	0.81	0.0	0.05	8.91	0.00	2.120	12.34	0.26	4.4	95.6	0.0	-2.69	0.75	0.79	4.16	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14876	1852	8	0	12	0	0	logfile
✘	5GUP	9539	2023-05-04	2016-08-30	4.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	109982	13895	107	0	77	0	0	logfile
✘	5GW5	9541	2023-05-06	2016-09-08	4.6	4.75	—	4.7	0.002	0.58	0.0	0.04	7.37	0.00	2.136	6.87	0.01	4.5	95.4	0.1	-3.73	0.74	0.64	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64544	8446	16	0	0	0	0	logfile
✘	5GW4	9540	2023-05-06	2016-09-08	4.7	4.89	—	4.8	0.001	0.42	0.0	0.04	7.26	0.00	2.187	6.49	0.00	4.3	95.6	0.1	-3.58	0.77	0.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64544	8446	16	0	0	0	0	logfile
✘	5TAY	8389	2023-05-07	2016-09-10	4.6	4.71	4.77	4.5	0.004	0.86	4.0	0.05	9.86	0.01	1.374	4.89	0.46	10.4	89.4	0.2	-4.90	0.75	0.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	121276	13500	12	0	3712	0	0	logfile
✘	5TAT	8384	2023-05-07	2016-09-10	4.8	5.01	5.79	4.8	0.004	0.87	0.0	0.05	9.77	0.01	1.373	4.75	0.35	9.4	90.5	0.1	-4.89	0.78	0.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	121452	13500	12	0	3716	0	0	logfile
✘	5TAV	8386	2023-05-07	2016-09-10	4.8	4.96	5.58	4.7	0.004	0.89	4.0	0.05	9.80	0.01	1.373	4.75	0.39	9.7	90.1	0.2	-4.80	0.77	0.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	121452	13500	12	0	3716	0	0	logfile

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