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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 5XTH | 6775 | 2024-01-19 | 2017-06-19 | 3.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 115642 | 14193 | 113 | 0 | 63 | 0 | 0 | logfile |
✘ | 5XTD | 6773 | 2024-01-20 | 2017-06-19 | 3.7 | 3.83 | — | 3.7 | 0.012 | 1.58 | 1.0 | 0.07 | 12.91 | 0.01 | 1.049 | 27.86 | 0.83 | 6.5 | 90.6 | 2.9 | -1.69 | 0.75 | 0.72 | 2.51 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 66789 | 8191 | 62 | 0 | 30 | 0 | 0 | logfile |
✘ | 5WC3 | 8795 | 2024-01-19 | 2017-06-29 | 3.5 | 3.53 | — | 3.5 | 0.015 | 1.18 | 0.0 | 0.06 | 9.37 | 0.01 | 1.925 | 12.86 | 0.00 | 8.0 | 90.5 | 1.5 | -5.20 | 0.79 | 0.76 | 2.30 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 65880 | 4170 | 30 | 0 | 0 | 0 | 33390 | logfile |
✘ | 5oJQ | 3566 | 2024-01-18 | 2017-07-22 | 3.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -5.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 113346 | 14364 | 54 | 0 | 0 | 0 | 0 | logfile |
✘ | 5oQJ | 3846 | 2024-01-19 | 2017-08-11 | 4.7 | 4.68 | — | 4.2 | 0.007 | 0.54 | 0.0 | 0.04 | 12.58 | 0.00 | 1.336 | 7.82 | 0.30 | 6.5 | 92.3 | 1.2 | -3.41 | 0.70 | 0.58 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62931 | 7649 | 43 | 148 | 557 | 0 | 0 | logfile |
✘ | 5BK4 | 9400 | 2024-01-19 | 2017-09-12 | 3.9 | 4.14 | — | 4.1 | 0.008 | 1.24 | 0.0 | 0.06 | 14.59 | 0.01 | 2.234 | 5.12 | 1.24 | 12.2 | 87.6 | 0.2 | -4.81 | 0.81 | 0.79 | 2.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62482 | 7636 | 22 | 120 | 8 | 0 | 0 | logfile |
✘ | 6EoJ | 3908 | 2024-01-20 | 2017-10-09 | 3.55 | 3.58 | 3.51 | 3.6 | 0.007 | 1.33 | 7.0 | 0.09 | 16.65 | 0.00 | 2.526 | 9.73 | 4.80 | 10.1 | 88.2 | 1.7 | -3.75 | 0.59 | 0.78 | 2.60 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13688 | 1710 | 4 | 0 | 7 | 0 | 0 | logfile |
✘ | 6ETi | 3953 | 2024-01-19 | 2017-10-26 | 3.1 | 3.22 | — | 3.2 | 0.010 | 1.09 | 0.0 | 0.06 | 11.80 | 0.01 | 2.316 | 3.13 | 0.30 | 5.3 | 94.5 | 0.2 | -4.70 | 0.73 | 0.88 | 4.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12442 | 1582 | 10 | 0 | 6 | 0 | 0 | logfile |
✘ | 6BNP | 7116 | 2024-01-18 | 2017-11-17 | 4.6 | 4.61 | 3.78 | 4.4 | 0.015 | 2.10 | 24.0 | 0.11 | 16.18 | 0.02 | 1.814 | 0.55 | 1.80 | 8.3 | 90.3 | 1.3 | -3.94 | 0.48 | 0.46 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 56792 | 7160 | 22 | 0 | 16 | 0 | 0 | logfile |
✘ | 5Z1W | 6877 | 2024-01-20 | 2017-12-28 | 3.38 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -3.34 | — | — | 4.86 | 3.5 | 0.003 | 0.57 | 0.0 | 0.04 | 13.89 | 0.00 | 2.133 | 6.05 | 2.12 | 2.3 | 97.7 | 0.0 | 1.73 | — | 0.67 | 0.86 | 3.18 | 13824 | 1716 | 8 | 0 | 12 | 0 | 0 | logfile |
✘ | 6C9A | 7435 | 2024-01-19 | 2018-01-25 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12182 | 1446 | 6 | 0 | 8 | 0 | 0 | logfile |
✘ | 6CNN | 7538 | 2024-01-20 | 2018-03-08 | 3.5 | 3.63 | — | 3.6 | 0.008 | 1.07 | 0.0 | 0.05 | 12.90 | 0.01 | 2.016 | 1.24 | 0.00 | 4.0 | 96.0 | 0.0 | -4.29 | 0.66 | 0.83 | 2.52 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15740 | 2024 | 16 | 0 | 28 | 0 | 0 | logfile |
✘ | 6CT0 | 7610 | 2024-01-17 | 2018-03-21 | 3.1 | 3.17 | — | 3.2 | 0.010 | 1.57 | 0.0 | 0.07 | 17.75 | 0.01 | 2.273 | 14.28 | 17.87 | 2.7 | 97.3 | 0.0 | -2.00 | 0.74 | 0.86 | 2.24 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 105600 | 13740 | 60 | 0 | 0 | 0 | 0 | logfile |
✘ | 6G2J | 4345 | 2024-01-20 | 2018-03-23 | 3.3 | 3.41 | 3.49 | 3.4 | 0.009 | 1.17 | 0.0 | 1.03 | 13.01 | 0.01 | 1.499 | 6.66 | 0.06 | 14.9 | 84.7 | 0.4 | -5.96 | 0.59 | 0.77 | 3.32 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 66811 | 8164 | 60 | 0 | 34 | 0 | 0 | logfile |
✘ | 6GB2 | 4370 | 2024-01-18 | 2018-04-13 | 3.2 | 3.20 | 3.10 | 3.1 | 0.007 | 1.14 | 0.0 | 0.05 | 20.45 | 0.01 | 1.865 | 9.38 | 10.13 | 4.0 | 95.9 | 0.2 | -2.82 | 0.85 | 0.89 | 2.34 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 111109 | 9312 | 78 | 1687 | 225 | 2 | 0 | logfile |
✘ | 5ZWM | 6972 | 2024-01-18 | 2018-05-16 | 3.4 | 3.37 | — | 3.3 | 0.007 | 1.15 | 10.0 | 0.06 | 14.46 | 0.01 | 1.786 | 18.95 | 0.72 | 5.9 | 93.5 | 0.6 | -3.22 | 0.51 | 0.43 | 1.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 111041 | 12858 | 61 | 634 | 8 | 0 | 0 | logfile |
✘ | 6DNH | 7112 | 2024-01-20 | 2018-06-06 | 3.4 | 3.52 | — | 3.5 | 0.010 | 1.08 | 1.0 | 0.06 | 10.60 | 0.01 | 1.258 | 10.88 | 1.10 | 8.5 | 91.2 | 0.3 | -4.04 | 0.78 | 0.80 | 3.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13442 | 1670 | 5 | 7 | 3 | 0 | 0 | logfile |
✘ | 6A69 | 6987 | 2024-01-18 | 2018-06-27 | 4.11 | 4.21 | — | 4.1 | 0.011 | 1.48 | 0.0 | 0.07 | 11.87 | 0.01 | 2.275 | 7.51 | 1.81 | 13.5 | 86.4 | 0.1 | -4.69 | 0.61 | 0.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7851 | 1038 | 2 | 0 | 1 | 0 | 0 | logfile |
✘ | 6E1P | 8960 | 2024-01-19 | 2018-07-10 | 3.7 | 3.93 | 3.55 | 3.9 | 0.010 | 1.30 | 1.0 | 0.06 | 14.00 | 0.01 | 1.571 | 10.25 | 0.18 | 6.9 | 92.9 | 0.2 | -5.32 | 0.47 | 0.68 | 1.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10697 | 1292 | 6 | 0 | 21 | 2 | 0 | logfile |
✘ | 6HiN | 0225 | 2024-01-20 | 2018-08-30 | 4.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14220 | 1675 | 20 | 0 | 30 | 0 | 0 | logfile |