Table showing results for May 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7CM6	30402	2023-05-15	2020-07-25	3.0	2.48	—	3.0	0.004	0.82	0.0	0.05	8.42	0.01	2.281	3.06	0.00	3.6	96.4	0.0	-4.13	0.72	0.74	2.21	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	38680	4888	16	0	8	0	0	logfile
✘	6Q2R	20578	2023-05-13	2019-08-08	4.3	4.92	—	4.6	0.004	0.82	0.0	0.05	8.43	0.01	1.384	4.86	0.00	5.4	94.6	0.0	-3.85	0.68	0.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30392	3800	16	0	40	0	0	logfile
✘	7Wo4	32638	2023-05-10	2022-01-20	4.47	3.18	—	3.4	0.003	0.48	0.0	0.04	8.44	0.00	2.234	5.78	3.89	6.1	93.9	0.0	-3.76	0.83	0.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	71208	9096	24	0	90	0	0	logfile
✘	7ZR8	14886	2023-05-03	2022-05-03	3.7	3.81	3.43	3.8	0.003	0.46	0.0	0.04	8.45	0.00	2.181	7.02	0.74	3.9	96.1	0.0	-0.94	0.72	0.82	2.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3693	471	4	0	1	0	0	logfile
✘	6HUo	0282	2023-05-06	2018-10-09	3.26	3.38	3.25	3.3	0.006	0.89	0.0	0.06	8.62	0.01	2.257	4.69	0.00	3.8	96.2	0.0	-4.15	0.74	0.83	4.30	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15227	1808	16	0	35	0	0	logfile
✘	8EFQ	28088	2023-05-03	2022-09-08	3.3	3.58	3.24	3.6	0.004	0.81	0.0	0.05	8.64	0.01	2.298	3.12	0.00	1.4	98.6	0.0	-1.52	0.60	0.72	1.55	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7046	892	6	0	2	0	0	logfile
✘	6CNA	7529	2023-05-09	2018-03-07	4.6	5.89	—	5.8	0.007	0.93	0.0	0.05	8.64	0.01	2.021	26.55	0.00	9.7	90.1	0.3	-4.80	0.57	0.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21426	3160	14	0	22	0	0	logfile
✘	5T4D	8354	2023-05-06	2016-08-29	3.0	3.12	2.96	3.1	0.010	0.81	0.0	0.05	8.91	0.00	2.120	12.34	0.26	4.4	95.6	0.0	-2.69	0.75	0.79	4.16	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14876	1852	8	0	12	0	0	logfile
✘	7Fii	31598	2023-05-04	2021-07-31	4.3	4.37	—	4.1	0.002	0.36	0.0	0.04	8.97	0.00	2.073	1.66	0.00	0.9	99.1	0.0	3.08	0.64	0.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8765	1522	6	0	0	0	0	logfile
✘	6ZDG	11173	2023-05-12	2020-06-14	4.7	4.97	—	4.8	0.004	0.50	0.0	0.04	8.99	0.00	1.891	7.24	2.41	3.9	96.1	0.0	0.05	0.71	0.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	28548	1884	12	0	3	0	13995	logfile
✘	6BQ1	7129	2023-05-15	2017-11-27	3.6	3.71	—	3.6	0.007	0.95	6.0	0.05	9.09	0.01	1.899	27.65	0.11	5.2	94.8	0.0	-3.86	0.60	0.49	1.40	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	37163	4050	8	0	955	0	0	logfile
✘	6i53	4411	2023-05-06	2018-11-12	3.2	3.37	3.20	3.3	0.007	0.90	0.0	0.05	9.13	0.01	2.264	3.96	0.00	3.7	96.3	0.0	-4.72	0.52	0.70	4.33	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15362	1821	16	0	34	0	0	logfile
✘	7WoR	32656	2023-05-12	2022-01-22	3.7	2.87	—	3.2	0.003	0.53	0.0	0.05	9.19	0.01	2.216	8.02	5.34	7.7	92.2	0.1	-4.04	0.72	0.71	1.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29670	3799	9	0	23	0	0	logfile
✘	6oo5	20146	2023-05-07	2019-04-22	4.2	4.30	4.10	4.2	0.012	1.05	0.0	0.06	9.23	0.01	2.246	3.18	0.00	4.5	95.5	0.0	-2.74	0.65	0.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17548	2440	8	0	4	0	0	logfile
✘	5FMG	3231	2023-05-16	2015-11-04	3.6	3.39	—	3.4	0.012	1.50	0.0	0.06	9.27	0.01	2.110	20.79	0.29	5.1	93.8	1.1	-2.35	0.66	0.69	2.91	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	39334	5716	30	0	2	0	0	logfile
✘	6oo4	20145	2023-05-08	2019-04-22	3.3	3.45	3.23	3.5	0.013	1.10	0.0	0.06	9.30	0.01	1.858	2.96	0.00	3.4	96.6	0.0	-2.86	0.47	0.64	4.17	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18452	2440	8	0	4	0	0	logfile
✘	6TM2	10517	2023-05-03	2019-12-03	2.95	3.12	—	3.1	0.008	1.01	0.0	0.06	9.31	0.01	2.181	3.02	0.10	11.3	88.7	0.0	-4.14	0.44	0.47	2.90	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	55254	7230	60	0	54	138	0	logfile
✘	6VFH	21172	2023-05-15	2020-01-05	3.86	3.96	3.81	3.9	0.019	1.39	0.0	0.08	9.31	0.01	2.497	0.82	0.00	0.8	99.2	0.0	2.06	0.75	0.80	1.89	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	36984	4752	24	0	0	0	0	logfile
✘	6HYD	0308	2023-05-05	2018-10-19	3.9	4.01	—	4.0	0.004	0.85	0.0	0.05	9.33	0.01	2.319	2.63	0.24	5.7	94.0	0.3	-6.69	0.74	0.77	2.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12168	1543	1	0	31	0	0	logfile
✘	6Z85	11114	2023-05-15	2020-06-02	2.9	3.09	—	3.1	0.009	1.05	0.0	0.06	9.34	0.01	2.301	3.75	0.49	3.1	96.9	0.0	-4.47	0.62	0.69	2.50	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18880	2360	30	0	20	0	0	logfile

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