Table showing results for October 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8BQV	16188	2023-10-04	2023-01-18	2.0	1.96	1.89	1.9	0.008	1.01	0.0	0.07	8.75	0.00	0.000	15.01	0.00	6.8	93.2	0.0	-2.59	0.54	0.77	8.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8595	1155	45	0	105	120	0	logfile
✘	6CRV	7573	2023-10-10	2018-03-19	3.2	3.31	3.17	3.3	0.013	1.09	0.0	0.06	8.90	0.01	2.170	4.36	0.26	4.1	95.9	0.0	-3.09	0.74	0.81	3.13	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21036	2643	15	0	39	0	0	logfile
✘	5T4D	8354	2023-10-07	2016-08-29	3.0	3.12	2.96	3.1	0.010	0.81	0.0	0.05	8.91	0.00	2.120	12.34	0.26	4.4	95.6	0.0	-2.69	0.75	0.79	4.16	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14876	1852	8	0	12	0	0	logfile
✘	8BQW	16189	2023-10-08	2023-01-18	2.3	2.12	2.14	2.2	0.008	1.14	0.0	0.07	8.96	0.00	0.052	12.77	0.00	9.6	90.4	0.0	-3.78	0.46	0.75	7.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17385	2310	90	0	270	135	0	logfile
✘	7Fii	31598	2023-10-05	2021-07-31	4.3	4.37	—	4.1	0.002	0.36	0.0	0.04	8.97	0.00	2.073	1.66	0.00	0.9	99.1	0.0	3.08	0.64	0.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8765	1522	6	0	0	0	0	logfile
✘	6ZDG	11173	2023-10-14	2020-06-14	4.7	4.97	—	4.8	0.004	0.50	0.0	0.04	8.99	0.00	1.891	7.24	2.41	3.9	96.1	0.0	0.05	0.71	0.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	28548	1884	12	0	3	0	13995	logfile
✘	6i53	4411	2023-10-07	2018-11-12	3.2	3.37	3.20	3.3	0.007	0.90	0.0	0.05	9.13	0.01	2.264	3.96	0.00	3.7	96.3	0.0	-4.72	0.52	0.70	4.33	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15362	1821	16	0	34	0	0	logfile
✘	7WoR	32656	2023-10-14	2022-01-22	3.7	2.87	—	3.2	0.003	0.53	0.0	0.05	9.19	0.01	2.216	8.02	5.34	7.7	92.2	0.1	-4.04	0.72	0.71	1.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29670	3799	9	0	23	0	0	logfile
✘	6oo5	20146	2023-10-08	2019-04-22	4.2	4.30	4.10	4.2	0.012	1.05	0.0	0.06	9.23	0.01	2.246	3.18	0.00	4.5	95.5	0.0	-2.74	0.65	0.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17548	2440	8	0	4	0	0	logfile
✘	6oo4	20145	2023-10-09	2019-04-22	3.3	3.45	3.23	3.5	0.013	1.10	0.0	0.06	9.30	0.01	1.858	2.96	0.00	3.4	96.6	0.0	-2.86	0.47	0.64	4.17	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18452	2440	8	0	4	0	0	logfile
✘	7Q9J	13871	2023-10-19	2021-11-12	4.0	4.41	—	4.2	0.005	0.57	0.0	0.04	9.31	0.00	2.081	6.34	0.64	3.6	96.4	0.0	0.36	0.83	0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30290	3794	25	0	57	0	0	logfile
✘	6TM2	10517	2023-10-03	2019-12-03	2.95	3.12	—	3.1	0.008	1.01	0.0	0.06	9.31	0.01	2.181	3.02	0.10	11.3	88.7	0.0	-4.14	0.44	0.47	2.90	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	55254	7230	60	0	54	138	0	logfile
✘	6HYD	0308	2023-10-06	2018-10-19	3.9	4.01	—	4.0	0.004	0.85	0.0	0.05	9.33	0.01	2.319	2.63	0.24	5.7	94.0	0.3	-6.69	0.74	0.77	2.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12168	1543	1	0	31	0	0	logfile
✘	6U7M	20673	2023-10-18	2019-09-03	3.8	4.00	—	4.0	0.004	0.78	0.0	0.05	9.33	0.01	2.321	2.88	0.27	8.3	91.7	0.0	-4.11	0.57	0.81	2.42	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	99420	12510	30	0	0	0	0	logfile
✘	3J9J	5778	2023-10-10	2015-02-02	3.275	3.52	3.19	3.6	0.015	1.08	0.0	0.09	9.35	0.01	2.266	2.70	0.00	3.3	94.5	2.2	-0.65	0.53	0.57	2.57	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21068	1260	4	0	0	0	10624	logfile
✘	5WC3	8795	2023-10-06	2017-06-29	3.5	3.53	—	3.5	0.015	1.18	0.0	0.06	9.37	0.01	1.925	12.86	0.00	8.0	90.5	1.5	-5.20	0.79	0.76	2.30	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	65880	4170	30	0	0	0	33390	logfile
✘	6CRX	7575	2023-10-12	2018-03-19	3.9	4.05	4.09	3.9	0.010	1.12	1.0	0.06	9.42	0.01	2.208	7.00	0.18	6.8	93.2	0.0	-3.73	0.76	0.75	1.86	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	26012	3203	33	0	74	0	0	logfile
✘	7XL4	33272	2023-10-12	2022-04-21	3.86	3.92	—	3.8	0.001	0.36	0.0	0.04	9.42	0.00	2.274	4.13	0.00	1.4	98.6	0.0	-4.82	0.78	0.75	1.26	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24560	3479	8	0	3	0	0	logfile
✘	6oo7	20148	2023-10-08	2019-04-22	3.8	4.25	3.77	4.0	0.013	1.08	0.0	0.06	9.52	0.01	2.273	4.27	0.00	3.5	96.5	0.0	-1.41	0.75	0.78	2.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16860	2394	8	0	4	0	0	logfile
✘	5WEL	8820	2023-10-13	2017-07-10	4.4	4.52	—	4.4	0.006	0.98	0.0	0.64	9.59	0.01	2.206	6.86	0.61	6.5	93.4	0.1	-4.07	0.69	0.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	27638	3484	8	0	6	0	0	logfile

• ← previous
• Page 2 of 58
• next →