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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7CM6 | 30402 | 2023-05-15 | 2020-07-25 | 3.0 | 2.48 | — | 3.0 | 0.004 | 0.82 | 0.0 | 0.05 | 8.42 | 0.01 | 2.281 | 3.06 | 0.00 | 3.6 | 96.4 | 0.0 | -4.13 | 0.72 | 0.74 | 2.21 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 38680 | 4888 | 16 | 0 | 8 | 0 | 0 | logfile |
✘ | 6Q2R | 20578 | 2023-05-13 | 2019-08-08 | 4.3 | 4.92 | — | 4.6 | 0.004 | 0.82 | 0.0 | 0.05 | 8.43 | 0.01 | 1.384 | 4.86 | 0.00 | 5.4 | 94.6 | 0.0 | -3.85 | 0.68 | 0.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30392 | 3800 | 16 | 0 | 40 | 0 | 0 | logfile |
✘ | 7Wo4 | 32638 | 2023-05-10 | 2022-01-20 | 4.47 | 3.18 | — | 3.4 | 0.003 | 0.48 | 0.0 | 0.04 | 8.44 | 0.00 | 2.234 | 5.78 | 3.89 | 6.1 | 93.9 | 0.0 | -3.76 | 0.83 | 0.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 71208 | 9096 | 24 | 0 | 90 | 0 | 0 | logfile |
✘ | 7ZR8 | 14886 | 2023-05-03 | 2022-05-03 | 3.7 | 3.81 | 3.43 | 3.8 | 0.003 | 0.46 | 0.0 | 0.04 | 8.45 | 0.00 | 2.181 | 7.02 | 0.74 | 3.9 | 96.1 | 0.0 | -0.94 | 0.72 | 0.82 | 2.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3693 | 471 | 4 | 0 | 1 | 0 | 0 | logfile |
✘ | 6HUo | 0282 | 2023-05-06 | 2018-10-09 | 3.26 | 3.38 | 3.25 | 3.3 | 0.006 | 0.89 | 0.0 | 0.06 | 8.62 | 0.01 | 2.257 | 4.69 | 0.00 | 3.8 | 96.2 | 0.0 | -4.15 | 0.74 | 0.83 | 4.30 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15227 | 1808 | 16 | 0 | 35 | 0 | 0 | logfile |
✘ | 8EFQ | 28088 | 2023-05-03 | 2022-09-08 | 3.3 | 3.58 | 3.24 | 3.6 | 0.004 | 0.81 | 0.0 | 0.05 | 8.64 | 0.01 | 2.298 | 3.12 | 0.00 | 1.4 | 98.6 | 0.0 | -1.52 | 0.60 | 0.72 | 1.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7046 | 892 | 6 | 0 | 2 | 0 | 0 | logfile |
✘ | 6CNA | 7529 | 2023-05-09 | 2018-03-07 | 4.6 | 5.89 | — | 5.8 | 0.007 | 0.93 | 0.0 | 0.05 | 8.64 | 0.01 | 2.021 | 26.55 | 0.00 | 9.7 | 90.1 | 0.3 | -4.80 | 0.57 | 0.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21426 | 3160 | 14 | 0 | 22 | 0 | 0 | logfile |
✘ | 5T4D | 8354 | 2023-05-06 | 2016-08-29 | 3.0 | 3.12 | 2.96 | 3.1 | 0.010 | 0.81 | 0.0 | 0.05 | 8.91 | 0.00 | 2.120 | 12.34 | 0.26 | 4.4 | 95.6 | 0.0 | -2.69 | 0.75 | 0.79 | 4.16 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14876 | 1852 | 8 | 0 | 12 | 0 | 0 | logfile |
✘ | 7Fii | 31598 | 2023-05-04 | 2021-07-31 | 4.3 | 4.37 | — | 4.1 | 0.002 | 0.36 | 0.0 | 0.04 | 8.97 | 0.00 | 2.073 | 1.66 | 0.00 | 0.9 | 99.1 | 0.0 | 3.08 | 0.64 | 0.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8765 | 1522 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 6ZDG | 11173 | 2023-05-12 | 2020-06-14 | 4.7 | 4.97 | — | 4.8 | 0.004 | 0.50 | 0.0 | 0.04 | 8.99 | 0.00 | 1.891 | 7.24 | 2.41 | 3.9 | 96.1 | 0.0 | 0.05 | 0.71 | 0.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28548 | 1884 | 12 | 0 | 3 | 0 | 13995 | logfile |
✘ | 6BQ1 | 7129 | 2023-05-15 | 2017-11-27 | 3.6 | 3.71 | — | 3.6 | 0.007 | 0.95 | 6.0 | 0.05 | 9.09 | 0.01 | 1.899 | 27.65 | 0.11 | 5.2 | 94.8 | 0.0 | -3.86 | 0.60 | 0.49 | 1.40 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37163 | 4050 | 8 | 0 | 955 | 0 | 0 | logfile |
✘ | 6i53 | 4411 | 2023-05-06 | 2018-11-12 | 3.2 | 3.37 | 3.20 | 3.3 | 0.007 | 0.90 | 0.0 | 0.05 | 9.13 | 0.01 | 2.264 | 3.96 | 0.00 | 3.7 | 96.3 | 0.0 | -4.72 | 0.52 | 0.70 | 4.33 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15362 | 1821 | 16 | 0 | 34 | 0 | 0 | logfile |
✘ | 7WoR | 32656 | 2023-05-12 | 2022-01-22 | 3.7 | 2.87 | — | 3.2 | 0.003 | 0.53 | 0.0 | 0.05 | 9.19 | 0.01 | 2.216 | 8.02 | 5.34 | 7.7 | 92.2 | 0.1 | -4.04 | 0.72 | 0.71 | 1.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29670 | 3799 | 9 | 0 | 23 | 0 | 0 | logfile |
✘ | 6oo5 | 20146 | 2023-05-07 | 2019-04-22 | 4.2 | 4.30 | 4.10 | 4.2 | 0.012 | 1.05 | 0.0 | 0.06 | 9.23 | 0.01 | 2.246 | 3.18 | 0.00 | 4.5 | 95.5 | 0.0 | -2.74 | 0.65 | 0.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17548 | 2440 | 8 | 0 | 4 | 0 | 0 | logfile |
✘ | 5FMG | 3231 | 2023-05-16 | 2015-11-04 | 3.6 | 3.39 | — | 3.4 | 0.012 | 1.50 | 0.0 | 0.06 | 9.27 | 0.01 | 2.110 | 20.79 | 0.29 | 5.1 | 93.8 | 1.1 | -2.35 | 0.66 | 0.69 | 2.91 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 39334 | 5716 | 30 | 0 | 2 | 0 | 0 | logfile |
✘ | 6oo4 | 20145 | 2023-05-08 | 2019-04-22 | 3.3 | 3.45 | 3.23 | 3.5 | 0.013 | 1.10 | 0.0 | 0.06 | 9.30 | 0.01 | 1.858 | 2.96 | 0.00 | 3.4 | 96.6 | 0.0 | -2.86 | 0.47 | 0.64 | 4.17 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18452 | 2440 | 8 | 0 | 4 | 0 | 0 | logfile |
✘ | 6TM2 | 10517 | 2023-05-03 | 2019-12-03 | 2.95 | 3.12 | — | 3.1 | 0.008 | 1.01 | 0.0 | 0.06 | 9.31 | 0.01 | 2.181 | 3.02 | 0.10 | 11.3 | 88.7 | 0.0 | -4.14 | 0.44 | 0.47 | 2.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 55254 | 7230 | 60 | 0 | 54 | 138 | 0 | logfile |
✘ | 6VFH | 21172 | 2023-05-15 | 2020-01-05 | 3.86 | 3.96 | 3.81 | 3.9 | 0.019 | 1.39 | 0.0 | 0.08 | 9.31 | 0.01 | 2.497 | 0.82 | 0.00 | 0.8 | 99.2 | 0.0 | 2.06 | 0.75 | 0.80 | 1.89 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36984 | 4752 | 24 | 0 | 0 | 0 | 0 | logfile |
✘ | 6HYD | 0308 | 2023-05-05 | 2018-10-19 | 3.9 | 4.01 | — | 4.0 | 0.004 | 0.85 | 0.0 | 0.05 | 9.33 | 0.01 | 2.319 | 2.63 | 0.24 | 5.7 | 94.0 | 0.3 | -6.69 | 0.74 | 0.77 | 2.59 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12168 | 1543 | 1 | 0 | 31 | 0 | 0 | logfile |
✘ | 6Z85 | 11114 | 2023-05-15 | 2020-06-02 | 2.9 | 3.09 | — | 3.1 | 0.009 | 1.05 | 0.0 | 0.06 | 9.34 | 0.01 | 2.301 | 3.75 | 0.49 | 3.1 | 96.9 | 0.0 | -4.47 | 0.62 | 0.69 | 2.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18880 | 2360 | 30 | 0 | 20 | 0 | 0 | logfile |