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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 5WC3 | 8795 | 2023-05-06 | 2017-06-29 | 3.5 | 3.53 | — | 3.5 | 0.015 | 1.18 | 0.0 | 0.06 | 9.37 | 0.01 | 1.925 | 12.86 | 0.00 | 8.0 | 90.5 | 1.5 | -5.20 | 0.79 | 0.76 | 2.30 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 65880 | 4170 | 30 | 0 | 0 | 0 | 33390 | logfile |
✘ | 6CRX | 7575 | 2023-05-11 | 2018-03-19 | 3.9 | 4.05 | 4.09 | 3.9 | 0.010 | 1.12 | 1.0 | 0.06 | 9.42 | 0.01 | 2.208 | 7.00 | 0.18 | 6.8 | 93.2 | 0.0 | -3.73 | 0.76 | 0.75 | 1.86 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 26012 | 3203 | 33 | 0 | 74 | 0 | 0 | logfile |
✘ | 7XL4 | 33272 | 2023-05-10 | 2022-04-21 | 3.86 | 3.92 | — | 3.8 | 0.001 | 0.36 | 0.0 | 0.04 | 9.42 | 0.00 | 2.274 | 4.13 | 0.00 | 1.4 | 98.6 | 0.0 | -4.82 | 0.78 | 0.75 | 1.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24560 | 3479 | 8 | 0 | 3 | 0 | 0 | logfile |
✘ | 6oo7 | 20148 | 2023-05-07 | 2019-04-22 | 3.8 | 4.25 | 3.77 | 4.0 | 0.013 | 1.08 | 0.0 | 0.06 | 9.52 | 0.01 | 2.273 | 4.27 | 0.00 | 3.5 | 96.5 | 0.0 | -1.41 | 0.75 | 0.78 | 2.01 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16860 | 2394 | 8 | 0 | 4 | 0 | 0 | logfile |
✘ | 5WEL | 8820 | 2023-05-11 | 2017-07-10 | 4.4 | 4.52 | — | 4.4 | 0.006 | 0.98 | 0.0 | 0.64 | 9.59 | 0.01 | 2.206 | 6.86 | 0.61 | 6.5 | 93.4 | 0.1 | -4.07 | 0.69 | 0.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 27638 | 3484 | 8 | 0 | 6 | 0 | 0 | logfile |
✘ | 6BCL | 7082 | 2023-05-13 | 2017-10-20 | 3.54 | 3.64 | — | 3.6 | 0.008 | 0.96 | 0.0 | 0.05 | 9.61 | 0.01 | 2.324 | 3.07 | 0.38 | 5.8 | 94.2 | 0.0 | -4.83 | 0.63 | 0.80 | 2.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30474 | 3868 | 5 | 0 | 2 | 0 | 0 | logfile |
✘ | 7VF9 | 31948 | 2023-05-10 | 2021-09-10 | 4.04 | 4.13 | — | 4.1 | 0.001 | 0.38 | 0.0 | 0.04 | 9.65 | 0.00 | 2.176 | 3.71 | 0.05 | 1.5 | 98.5 | 0.0 | -4.44 | 0.74 | 0.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24247 | 3425 | 7 | 0 | 3 | 0 | 0 | logfile |
✘ | 7T4M | 25680 | 2023-05-16 | 2021-12-10 | 2.48 | 2.77 | 2.55 | 2.7 | 0.001 | 0.38 | 0.0 | 0.04 | 9.69 | 0.00 | 2.253 | 4.85 | 0.97 | 1.6 | 98.4 | 0.0 | 1.34 | 0.72 | 0.86 | 4.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 39054 | 4854 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 7T6X | 25730 | 2023-05-04 | 2021-12-14 | 3.83 | 4.14 | 3.83 | 4.0 | 0.022 | 1.97 | 0.0 | 0.13 | 9.71 | 0.02 | 1.505 | 3.89 | 0.00 | 3.8 | 96.1 | 0.1 | -0.16 | 0.77 | 0.82 | 2.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9217 | 1140 | 19 | 0 | 37 | 0 | 0 | logfile |
✘ | 6R10 | 4703 | 2023-05-15 | 2019-03-13 | 4.3 | 4.31 | — | 4.2 | 0.007 | 0.96 | 0.0 | 0.06 | 9.71 | 0.01 | 2.155 | 5.28 | 0.11 | 7.6 | 92.4 | 0.0 | -3.74 | 0.84 | 0.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 38522 | 5842 | 28 | 0 | 3 | 0 | 0 | logfile |
✘ | 7DX4 | 30895 | 2023-05-04 | 2021-01-18 | 3.6 | 3.96 | — | 3.8 | 0.007 | 1.00 | 0.0 | 0.06 | 9.71 | 0.01 | 0.766 | 7.28 | 0.23 | 6.0 | 93.7 | 0.3 | -4.20 | 0.71 | 0.79 | 3.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8234 | 1027 | 6 | 0 | 5 | 0 | 0 | logfile |
✘ | 6RW6 | 10033 | 2023-05-16 | 2019-06-04 | 2.75 | 2.81 | — | 2.7 | 0.011 | 0.96 | 0.0 | 0.06 | 9.75 | 0.01 | 2.148 | 4.16 | 0.00 | 2.2 | 97.8 | 0.0 | -3.68 | 0.85 | 0.87 | 4.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 98645 | 12425 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 5TAT | 8384 | 2023-05-07 | 2016-09-10 | 4.8 | 5.01 | 5.79 | 4.8 | 0.004 | 0.87 | 0.0 | 0.05 | 9.77 | 0.01 | 1.373 | 4.75 | 0.35 | 9.4 | 90.5 | 0.1 | -4.89 | 0.78 | 0.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 121452 | 13500 | 12 | 0 | 3716 | 0 | 0 | logfile |
✘ | 6R0Z | 4702 | 2023-05-16 | 2019-03-13 | 3.8 | 3.83 | — | 3.8 | 0.007 | 0.97 | 1.0 | 0.06 | 9.78 | 0.01 | 2.152 | 4.34 | 0.19 | 6.2 | 93.8 | 0.0 | -3.88 | 0.85 | 0.85 | 3.07 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40184 | 5847 | 27 | 0 | 3 | 0 | 0 | logfile |
✘ | 5TAV | 8386 | 2023-05-07 | 2016-09-10 | 4.8 | 4.96 | 5.58 | 4.7 | 0.004 | 0.89 | 4.0 | 0.05 | 9.80 | 0.01 | 1.373 | 4.75 | 0.39 | 9.7 | 90.1 | 0.2 | -4.80 | 0.77 | 0.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 121452 | 13500 | 12 | 0 | 3716 | 0 | 0 | logfile |
✘ | 6PV8 | 20488 | 2023-05-08 | 2019-07-19 | 3.87 | 4.04 | 3.94 | 4.0 | 0.006 | 1.07 | 1.0 | 0.07 | 9.81 | 0.01 | 2.057 | 5.07 | 0.69 | 4.9 | 95.1 | 0.0 | -2.83 | 0.70 | 0.79 | 2.52 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20051 | 2379 | 28 | 0 | 57 | 8 | 0 | logfile |
✘ | 7JMG | 22393 | 2023-05-07 | 2020-07-31 | 4.5 | 7.15 | — | 4.3 | 0.005 | 0.93 | 0.0 | 0.05 | 9.82 | 0.01 | 1.373 | 7.38 | 0.27 | 10.3 | 89.6 | 0.1 | -4.77 | 0.57 | 0.34 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 120756 | 13500 | 12 | 0 | 3608 | 0 | 0 | logfile |
✘ | 8F0A | 28754 | 2023-05-07 | 2022-11-02 | 2.6 | 3.77 | 2.61 | 3.4 | 0.031 | 1.77 | 0.0 | 0.13 | 9.86 | 0.01 | 2.388 | 0.56 | 0.00 | 0.8 | 99.2 | 0.0 | 0.72 | 0.68 | 0.66 | 4.15 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18060 | 1212 | 9 | 0 | 0 | 0 | 9189 | logfile |
✘ | 5TAY | 8389 | 2023-05-07 | 2016-09-10 | 4.6 | 4.71 | 4.77 | 4.5 | 0.004 | 0.86 | 4.0 | 0.05 | 9.86 | 0.01 | 1.374 | 4.89 | 0.46 | 10.4 | 89.4 | 0.2 | -4.90 | 0.75 | 0.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 121276 | 13500 | 12 | 0 | 3712 | 0 | 0 | logfile |
✘ | 7CWM | 30483 | 2023-05-13 | 2020-08-29 | 3.6 | 4.19 | — | 3.6 | 0.008 | 1.06 | 2.0 | 0.07 | 9.93 | 0.01 | 1.512 | 22.14 | 0.54 | 7.7 | 92.3 | 0.1 | -3.56 | 0.73 | 0.65 | 1.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30772 | 3883 | 26 | 0 | 44 | 0 | 0 | logfile |