Table showing results for May 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	5WC3	8795	2023-05-06	2017-06-29	3.5	3.53	—	3.5	0.015	1.18	0.0	0.06	9.37	0.01	1.925	12.86	0.00	8.0	90.5	1.5	-5.20	0.79	0.76	2.30	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	65880	4170	30	0	0	0	33390	logfile
✘	6CRX	7575	2023-05-11	2018-03-19	3.9	4.05	4.09	3.9	0.010	1.12	1.0	0.06	9.42	0.01	2.208	7.00	0.18	6.8	93.2	0.0	-3.73	0.76	0.75	1.86	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	26012	3203	33	0	74	0	0	logfile
✘	7XL4	33272	2023-05-10	2022-04-21	3.86	3.92	—	3.8	0.001	0.36	0.0	0.04	9.42	0.00	2.274	4.13	0.00	1.4	98.6	0.0	-4.82	0.78	0.75	1.26	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24560	3479	8	0	3	0	0	logfile
✘	6oo7	20148	2023-05-07	2019-04-22	3.8	4.25	3.77	4.0	0.013	1.08	0.0	0.06	9.52	0.01	2.273	4.27	0.00	3.5	96.5	0.0	-1.41	0.75	0.78	2.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16860	2394	8	0	4	0	0	logfile
✘	5WEL	8820	2023-05-11	2017-07-10	4.4	4.52	—	4.4	0.006	0.98	0.0	0.64	9.59	0.01	2.206	6.86	0.61	6.5	93.4	0.1	-4.07	0.69	0.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	27638	3484	8	0	6	0	0	logfile
✘	6BCL	7082	2023-05-13	2017-10-20	3.54	3.64	—	3.6	0.008	0.96	0.0	0.05	9.61	0.01	2.324	3.07	0.38	5.8	94.2	0.0	-4.83	0.63	0.80	2.42	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30474	3868	5	0	2	0	0	logfile
✘	7VF9	31948	2023-05-10	2021-09-10	4.04	4.13	—	4.1	0.001	0.38	0.0	0.04	9.65	0.00	2.176	3.71	0.05	1.5	98.5	0.0	-4.44	0.74	0.74	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24247	3425	7	0	3	0	0	logfile
✘	7T4M	25680	2023-05-16	2021-12-10	2.48	2.77	2.55	2.7	0.001	0.38	0.0	0.04	9.69	0.00	2.253	4.85	0.97	1.6	98.4	0.0	1.34	0.72	0.86	4.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	39054	4854	12	0	0	0	0	logfile
✘	7T6X	25730	2023-05-04	2021-12-14	3.83	4.14	3.83	4.0	0.022	1.97	0.0	0.13	9.71	0.02	1.505	3.89	0.00	3.8	96.1	0.1	-0.16	0.77	0.82	2.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9217	1140	19	0	37	0	0	logfile
✘	6R10	4703	2023-05-15	2019-03-13	4.3	4.31	—	4.2	0.007	0.96	0.0	0.06	9.71	0.01	2.155	5.28	0.11	7.6	92.4	0.0	-3.74	0.84	0.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	38522	5842	28	0	3	0	0	logfile
✘	7DX4	30895	2023-05-04	2021-01-18	3.6	3.96	—	3.8	0.007	1.00	0.0	0.06	9.71	0.01	0.766	7.28	0.23	6.0	93.7	0.3	-4.20	0.71	0.79	3.35	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8234	1027	6	0	5	0	0	logfile
✘	6RW6	10033	2023-05-16	2019-06-04	2.75	2.81	—	2.7	0.011	0.96	0.0	0.06	9.75	0.01	2.148	4.16	0.00	2.2	97.8	0.0	-3.68	0.85	0.87	4.43	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	98645	12425	5	0	0	0	0	logfile
✘	5TAT	8384	2023-05-07	2016-09-10	4.8	5.01	5.79	4.8	0.004	0.87	0.0	0.05	9.77	0.01	1.373	4.75	0.35	9.4	90.5	0.1	-4.89	0.78	0.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	121452	13500	12	0	3716	0	0	logfile
✘	6R0Z	4702	2023-05-16	2019-03-13	3.8	3.83	—	3.8	0.007	0.97	1.0	0.06	9.78	0.01	2.152	4.34	0.19	6.2	93.8	0.0	-3.88	0.85	0.85	3.07	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	40184	5847	27	0	3	0	0	logfile
✘	5TAV	8386	2023-05-07	2016-09-10	4.8	4.96	5.58	4.7	0.004	0.89	4.0	0.05	9.80	0.01	1.373	4.75	0.39	9.7	90.1	0.2	-4.80	0.77	0.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	121452	13500	12	0	3716	0	0	logfile
✘	6PV8	20488	2023-05-08	2019-07-19	3.87	4.04	3.94	4.0	0.006	1.07	1.0	0.07	9.81	0.01	2.057	5.07	0.69	4.9	95.1	0.0	-2.83	0.70	0.79	2.52	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20051	2379	28	0	57	8	0	logfile
✘	7JMG	22393	2023-05-07	2020-07-31	4.5	7.15	—	4.3	0.005	0.93	0.0	0.05	9.82	0.01	1.373	7.38	0.27	10.3	89.6	0.1	-4.77	0.57	0.34	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	120756	13500	12	0	3608	0	0	logfile
✘	8F0A	28754	2023-05-07	2022-11-02	2.6	3.77	2.61	3.4	0.031	1.77	0.0	0.13	9.86	0.01	2.388	0.56	0.00	0.8	99.2	0.0	0.72	0.68	0.66	4.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18060	1212	9	0	0	0	9189	logfile
✘	5TAY	8389	2023-05-07	2016-09-10	4.6	4.71	4.77	4.5	0.004	0.86	4.0	0.05	9.86	0.01	1.374	4.89	0.46	10.4	89.4	0.2	-4.90	0.75	0.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	121276	13500	12	0	3712	0	0	logfile
✘	7CWM	30483	2023-05-13	2020-08-29	3.6	4.19	—	3.6	0.008	1.06	2.0	0.07	9.93	0.01	1.512	22.14	0.54	7.7	92.3	0.1	-3.56	0.73	0.65	1.87	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30772	3883	26	0	44	0	0	logfile

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