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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6N1i | 8903 | 2024-01-19 | 2018-11-08 | 3.58 | 3.63 | — | 3.6 | 0.009 | 1.13 | 0.0 | 0.06 | 9.87 | 0.01 | 1.147 | 27.10 | 0.00 | 2.4 | 97.6 | 0.0 | -6.04 | 0.42 | 0.58 | 0.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11136 | 1360 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 8ES4 | 28562 | 2024-01-18 | 2022-10-13 | 3.3 | 3.43 | 3.25 | 5.2 | 0.002 | 0.49 | 0.0 | 0.04 | 13.99 | 0.00 | 0.946 | 19.53 | 0.00 | 3.7 | 96.2 | 0.0 | 0.75 | 0.36 | 0.16 | 0.10 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 110772 | 14766 | 48 | 0 | 0 | 0 | 0 | logfile |
✘ | 8iES | 35392 | 2024-01-18 | 2023-02-15 | 3.73 | 4.01 | 3.68 | 4.0 | 0.003 | 1.16 | 0.0 | 0.04 | 13.70 | 0.00 | 2.268 | 5.19 | 0.00 | 6.0 | 94.0 | 0.0 | -3.84 | 0.60 | 0.66 | 0.28 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7965 | 1026 | 2 | 0 | 3 | 0 | 0 | logfile |
✘ | 6TM5 | 10518 | 2024-01-19 | 2019-12-03 | 3.9 | 4.07 | — | 4.1 | 0.010 | 1.11 | 0.0 | 0.05 | 15.92 | 0.01 | 1.619 | 28.83 | 0.76 | 11.9 | 87.8 | 0.3 | -4.46 | 0.36 | 0.48 | 0.44 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 63885 | 8117 | 23 | 0 | 3 | 0 | 0 | logfile |
✘ | 7YoX | 33989 | 2024-01-20 | 2022-08-02 | 3.95 | 4.33 | 4.09 | 4.1 | 0.006 | 1.31 | 8.0 | 0.10 | 27.06 | 0.01 | 0.786 | 33.58 | 46.70 | 1.0 | 98.8 | 0.2 | 2.84 | 0.82 | 0.70 | 0.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13878 | 1749 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 8FWK | 29511 | 2024-01-18 | 2023-01-22 | 3.5 | 4.25 | 3.71 | 4.0 | 0.005 | 1.07 | 2.0 | 0.06 | 12.40 | 0.01 | 2.289 | 13.87 | 1.29 | 11.6 | 87.2 | 1.2 | -4.60 | 0.66 | 0.72 | 0.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9462 | 1194 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 7F62 | 31470 | 2024-01-17 | 2021-06-24 | 3.6 | 4.33 | — | 4.1 | 0.003 | 0.65 | 0.0 | 0.04 | 13.21 | 0.00 | 1.925 | 19.73 | 1.38 | 8.1 | 91.6 | 0.2 | -2.76 | 0.66 | 0.62 | 0.54 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3321 | 427 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 8DTB | 27695 | 2024-01-20 | 2022-07-25 | 3.14 | 3.27 | 3.11 | 3.2 | 0.003 | 0.62 | 0.0 | 0.04 | 18.08 | 0.00 | 2.175 | 9.05 | 0.99 | 1.9 | 98.1 | 0.0 | 1.18 | 0.66 | 0.74 | 0.59 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13724 | 1765 | 9 | 0 | 7 | 0 | 0 | logfile |
✘ | 7CH9 | 30372 | 2024-01-20 | 2020-07-05 | 3.5 | 3.92 | — | 3.8 | 0.005 | 0.82 | 0.0 | 0.04 | 18.11 | 0.00 | 2.032 | 18.63 | 10.34 | 9.6 | 90.4 | 0.0 | -4.56 | 0.69 | 0.78 | 0.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15978 | 2126 | 19 | 0 | 10 | 0 | 0 | logfile |
✘ | 8HRN | 34979 | 2024-01-17 | 2022-12-15 | 3.9 | 4.18 | 3.98 | 4.0 | 0.005 | 0.91 | 0.0 | 0.05 | 17.07 | 0.01 | 2.080 | 24.49 | 0.95 | 3.4 | 96.6 | 0.0 | -1.15 | 0.76 | 0.69 | 0.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4870 | 597 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 8HC8 | 34655 | 2024-01-17 | 2022-11-01 | 3.95 | 4.00 | 3.84 | 4.0 | 0.003 | 0.71 | 0.0 | 0.05 | 16.60 | 0.01 | 2.317 | 5.70 | 0.56 | 4.2 | 95.8 | 0.0 | -1.17 | 0.64 | 0.70 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4832 | 628 | 4 | 0 | 1 | 0 | 0 | logfile |
✘ | 8EWF | 28644 | 2024-01-18 | 2022-10-22 | 3.92 | 4.61 | 4.05 | 4.4 | 0.004 | 0.68 | 0.0 | 0.04 | 16.92 | 0.00 | 1.761 | 21.32 | 0.88 | 6.6 | 93.4 | 0.0 | -1.26 | 0.51 | 0.66 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 56534 | 3697 | 17 | 0 | 9 | 0 | 27869 | logfile |
✘ | 7EQ9 | 31256 | 2024-01-19 | 2021-04-30 | 3.3 | 3.70 | 3.42 | 3.6 | 0.002 | 0.47 | 0.0 | 0.04 | 15.65 | 0.00 | 2.267 | 3.70 | 0.00 | 3.3 | 96.7 | 0.0 | 1.85 | 0.60 | 0.53 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62520 | 7620 | 60 | 0 | 0 | 0 | 0 | logfile |
✘ | 8D85 | 27247 | 2024-01-18 | 2022-06-07 | 3.81 | 4.26 | 4.04 | 4.2 | 0.003 | 0.53 | 0.0 | 0.04 | 19.55 | 0.00 | 2.357 | 4.77 | 0.00 | 4.1 | 95.8 | 0.1 | -2.45 | 0.68 | 0.64 | 0.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7093 | 865 | 10 | 0 | 11 | 0 | 0 | logfile |
✘ | 8CTK | 26993 | 2024-01-17 | 2022-05-15 | 3.52 | 3.87 | 3.55 | 3.9 | 0.003 | 0.69 | 0.0 | 0.05 | 14.37 | 0.00 | 2.347 | 4.69 | 0.00 | 3.8 | 96.2 | 0.0 | -1.07 | 0.54 | 0.70 | 0.86 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3042 | 376 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 8HoY | 34927 | 2024-01-20 | 2022-12-11 | 2.76 | 2.99 | 2.88 | 3.1 | 0.002 | 0.46 | 0.0 | 0.04 | 13.25 | 0.00 | 2.189 | 9.49 | 0.00 | 7.4 | 92.6 | 0.1 | -0.64 | 0.51 | 0.54 | 0.86 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13454 | 1650 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 7XF2 | 33168 | 2024-01-17 | 2022-03-31 | 3.73 | 4.88 | 3.77 | 3.9 | 0.004 | 0.65 | 0.0 | 0.04 | 14.12 | 0.00 | 2.133 | 14.17 | 0.13 | 8.5 | 91.5 | 0.0 | -4.97 | 0.46 | 0.78 | 0.88 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6591 | 840 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 8D7R | 27231 | 2024-01-18 | 2022-06-07 | 3.9 | 4.13 | 3.91 | 4.0 | 0.003 | 0.54 | 0.0 | 0.04 | 15.03 | 0.00 | 2.345 | 5.62 | 0.00 | 8.1 | 91.9 | 0.0 | -3.25 | 0.60 | 0.56 | 0.88 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9627 | 1167 | 12 | 0 | 16 | 0 | 0 | logfile |
✘ | 7oE7 | 12861 | 2024-01-19 | 2021-05-01 | 3.73 | 3.95 | 3.97 | 3.7 | 0.002 | 0.53 | 0.0 | 0.04 | 14.33 | 0.00 | 2.084 | 3.86 | 0.00 | 6.8 | 93.2 | 0.0 | -1.48 | 0.79 | 0.64 | 0.91 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11116 | 1382 | 1 | 0 | 2 | 0 | 0 | logfile |
✘ | 8JVM | 36677 | 2024-01-17 | 2023-06-28 | 3.86 | 4.13 | 3.89 | 3.9 | 0.006 | 1.08 | 1.0 | 0.06 | 14.54 | 0.01 | 2.138 | 27.03 | 1.75 | 16.3 | 82.1 | 1.6 | -3.56 | 0.64 | 0.54 | 0.94 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3726 | 498 | 3 | 0 | 0 | 0 | 0 | logfile |