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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8H0Q | 34414 | 2024-01-18 | 2022-09-30 | 3.3 | 3.78 | 3.20 | 3.7 | 0.019 | 0.59 | 0.0 | 0.09 | 9.28 | 0.00 | 2.260 | 7.81 | 0.62 | 1.0 | 99.0 | 0.0 | -1.95 | 0.63 | 0.72 | 0.98 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8949 | 1134 | 7 | 0 | 3 | 0 | 0 | logfile |
✘ | 8JLK | 36400 | 2024-01-18 | 2023-06-02 | 3.22 | 3.56 | 3.28 | 3.6 | 0.006 | 0.87 | 0.0 | 0.05 | 14.65 | 0.01 | 2.213 | 11.02 | 0.95 | 6.2 | 93.8 | 0.0 | -0.94 | 0.61 | 0.67 | 0.98 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8824 | 1129 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 5ZWM | 6972 | 2024-01-18 | 2018-05-16 | 3.4 | 3.37 | — | 3.3 | 0.007 | 1.15 | 10.0 | 0.06 | 14.46 | 0.01 | 1.786 | 18.95 | 0.72 | 5.9 | 93.5 | 0.6 | -3.22 | 0.51 | 0.43 | 1.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 111041 | 12858 | 61 | 634 | 8 | 0 | 0 | logfile |
✘ | 8iXL | 35795 | 2024-01-19 | 2023-04-01 | 3.5 | 3.61 | 3.45 | 3.6 | 0.012 | 1.48 | 0.0 | 0.10 | 11.65 | 0.00 | 2.568 | 2.07 | 0.00 | 0.4 | 99.6 | 0.0 | 2.40 | 0.71 | 0.84 | 1.08 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10970 | 1455 | 35 | 0 | 0 | 0 | 0 | logfile |
✘ | 8BVR | 16269 | 2024-01-17 | 2022-12-05 | 3.52 | 4.00 | 3.61 | 3.9 | 0.005 | 0.72 | 0.0 | 0.04 | 17.01 | 0.01 | 2.178 | 12.22 | 0.19 | 4.6 | 95.4 | 0.0 | 0.64 | 0.62 | 0.78 | 1.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4806 | 617 | 3 | 0 | 3 | 0 | 0 | logfile |
✘ | 6ZY9 | 11555 | 2024-01-20 | 2020-07-30 | 3.3 | 3.42 | — | 3.5 | 0.004 | 0.81 | 0.0 | 0.05 | 13.73 | 0.01 | 2.174 | 2.45 | 0.25 | 4.7 | 95.3 | 0.0 | -5.76 | 0.62 | 0.71 | 1.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14973 | 1985 | 14 | 0 | 4 | 0 | 0 | logfile |
✘ | 6V4U | 21048 | 2024-01-18 | 2019-12-01 | 3.8 | 4.31 | — | 4.1 | 0.002 | 0.47 | 0.0 | 0.04 | 9.64 | 0.00 | 2.273 | 4.54 | 0.00 | 6.1 | 93.9 | 0.0 | -3.58 | 0.73 | 0.61 | 1.20 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7074 | 1106 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 8ERC | 28552 | 2024-01-17 | 2022-10-11 | 3.7 | 3.47 | 3.08 | 3.7 | 0.003 | 0.67 | 0.0 | 0.04 | 12.91 | 0.00 | 2.115 | 8.25 | 0.00 | 2.3 | 97.7 | 0.0 | 1.99 | 0.51 | 0.65 | 1.22 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3510 | 441 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 8CVi | 27008 | 2024-01-20 | 2022-05-18 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 1.49 | — | — | 1.22 | 3.4 | 0.003 | 0.59 | 0.0 | 0.04 | 16.35 | 0.00 | 2.089 | 10.90 | 1.79 | 4.0 | 96.0 | 0.0 | 3.61 | — | 0.58 | 0.85 | 0.95 | 66030 | 8856 | 33 | 0 | 0 | 0 | 0 | logfile |
✘ | 7VHP | 32002 | 2024-01-20 | 2021-09-22 | 3.27 | 3.30 | — | 3.2 | 0.003 | 0.63 | 0.0 | 0.04 | 13.46 | 0.00 | 1.149 | 15.64 | 0.32 | 3.1 | 96.8 | 0.0 | 1.82 | 0.78 | 0.73 | 1.24 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 66600 | 8304 | 48 | 0 | 0 | 0 | 0 | logfile |
✘ | 7RWC | 24714 | 2024-01-19 | 2021-08-19 | 3.8 | 4.08 | 3.75 | 4.0 | 0.004 | 0.60 | 0.0 | 0.04 | 12.87 | 0.00 | 2.175 | 8.83 | 0.09 | 5.6 | 94.4 | 0.1 | 0.33 | 0.71 | 0.72 | 1.25 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12110 | 1705 | 5 | 0 | 8 | 0 | 0 | logfile |
✘ | 7LPE | 23479 | 2024-01-20 | 2021-02-11 | 3.72 | 4.18 | 3.77 | 4.0 | 0.011 | 1.29 | 0.0 | 0.06 | 17.20 | 0.01 | 2.219 | 11.71 | 0.00 | 6.1 | 93.9 | 0.0 | -0.86 | 0.60 | 0.67 | 1.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13844 | 1944 | 8 | 0 | 12 | 0 | 0 | logfile |
✘ | 6NZo | 0559 | 2024-01-20 | 2019-02-14 | 3.8 | 4.12 | — | 4.0 | 0.007 | 0.93 | 0.0 | 0.06 | 27.02 | 0.01 | 2.313 | 3.45 | 0.12 | 4.8 | 95.1 | 0.1 | -1.08 | 0.78 | 0.76 | 1.27 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13738 | 985 | 11 | 290 | 3 | 0 | 0 | logfile |
✘ | 8oMo | 16973 | 2024-01-19 | 2023-03-31 | 3.43 | 2.51 | 3.47 | 3.2 | 0.007 | 1.36 | 2.0 | 0.09 | 17.68 | 0.00 | 1.488 | 21.48 | 4.68 | 8.0 | 92.0 | 0.0 | -3.82 | 0.75 | 0.80 | 1.33 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10290 | 1288 | 4 | 0 | 4 | 0 | 0 | logfile |
✘ | 6JiY | 9837 | 2024-01-19 | 2019-02-24 | 3.9 | 4.05 | — | 3.9 | 0.008 | 1.06 | 1.0 | 0.05 | 15.54 | 0.01 | 2.203 | 7.76 | 0.47 | 12.2 | 87.5 | 0.2 | -5.76 | 0.73 | 0.78 | 1.40 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 115288 | 15056 | 20 | 0 | 32 | 0 | 0 | logfile |
✘ | 8SL0 | 40570 | 2024-01-17 | 2023-04-20 | 3.3 | 4.17 | 3.09 | 3.8 | 0.003 | 0.62 | 0.0 | 0.05 | 16.00 | 0.00 | 2.201 | 7.96 | 0.00 | 8.4 | 91.2 | 0.4 | -1.67 | 0.42 | 0.83 | 1.40 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 1737 | 228 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 8EMH | 28248 | 2024-01-20 | 2022-09-27 | 3.63 | 4.77 | 3.84 | 3.8 | 0.004 | 0.68 | 0.0 | 0.04 | 15.52 | 0.00 | 2.084 | 13.38 | 0.01 | 2.8 | 97.1 | 0.1 | 0.72 | 0.88 | 0.78 | 1.41 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 65678 | 8025 | 14 | 127 | 0 | 0 | 0 | logfile |
✘ | 6ZGK | 11209 | 2024-01-19 | 2020-06-18 | 3.6 | 3.77 | 3.64 | 3.8 | 0.006 | 0.68 | 0.0 | 0.05 | 12.30 | 0.01 | 2.111 | 7.47 | 0.00 | 6.6 | 93.4 | 0.0 | -0.58 | 0.50 | 0.54 | 1.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11630 | 1535 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 6E1P | 8960 | 2024-01-19 | 2018-07-10 | 3.7 | 3.93 | 3.55 | 3.9 | 0.010 | 1.30 | 1.0 | 0.06 | 14.00 | 0.01 | 1.571 | 10.25 | 0.18 | 6.9 | 92.9 | 0.2 | -5.32 | 0.47 | 0.68 | 1.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10697 | 1292 | 6 | 0 | 21 | 2 | 0 | logfile |
✘ | 7ZGK | 14708 | 2024-01-20 | 2022-04-03 | 3.59 | 4.63 | 3.57 | 3.7 | 0.002 | 0.45 | 0.0 | 0.04 | 13.81 | 0.00 | 0.454 | 5.10 | 0.46 | 2.2 | 97.6 | 0.2 | 1.65 | 0.73 | 0.55 | 1.45 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13639 | 1723 | 3 | 0 | 0 | 0 | 0 | logfile |