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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6HD7 | 0202 | 2023-05-15 | 2018-08-17 | 3.4 | 3.54 | — | 3.3 | 0.002 | 0.43 | 0.0 | 0.03 | 14.93 | 0.00 | 0.345 | 24.96 | 0.08 | 11.1 | 87.1 | 1.9 | -3.26 | 0.66 | 0.65 | 0.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 141153 | 7514 | 52 | 3767 | 234 | 0 | 0 | logfile |
✘ | 8DCX | 27330 | 2023-05-04 | 2022-06-17 | 2.8 | 3.32 | 3.33 | 3.4 | 0.003 | 0.58 | 0.0 | 0.04 | 14.71 | 0.00 | 2.195 | 13.47 | 0.00 | 5.4 | 94.6 | 0.1 | -0.04 | 0.48 | 0.60 | 0.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9627 | 1166 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 7EQ9 | 31256 | 2023-05-05 | 2021-04-30 | 3.3 | 3.70 | 3.42 | 3.6 | 0.002 | 0.47 | 0.0 | 0.04 | 15.65 | 0.00 | 2.267 | 3.70 | 0.00 | 3.3 | 96.7 | 0.0 | 1.85 | 0.60 | 0.53 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62520 | 7620 | 60 | 0 | 0 | 0 | 0 | logfile |
✘ | 7ND7 | 12278 | 2023-05-14 | 2021-01-30 | 3.6 | 3.91 | — | 3.8 | 0.004 | 0.63 | 0.0 | 0.05 | 11.00 | 0.00 | 2.229 | 3.62 | 0.38 | 3.7 | 96.2 | 0.2 | -0.12 | 0.77 | 0.72 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29591 | 3699 | 30 | 0 | 64 | 0 | 0 | logfile |
✘ | 8D85 | 27247 | 2023-05-03 | 2022-06-07 | 3.81 | 4.26 | 4.04 | 4.2 | 0.003 | 0.53 | 0.0 | 0.04 | 11.75 | 0.00 | 2.357 | 4.77 | 0.00 | 4.1 | 95.8 | 0.1 | -2.45 | 0.68 | 0.64 | 0.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7093 | 865 | 10 | 0 | 11 | 0 | 0 | logfile |
✘ | 7XLB | 33276 | 2023-05-08 | 2022-04-21 | 3.44 | 3.67 | 3.47 | 3.7 | 0.003 | 0.64 | 0.0 | 0.04 | 19.23 | 0.01 | 2.236 | 8.13 | 0.19 | 7.7 | 92.3 | 0.0 | -3.68 | 0.63 | 0.71 | 0.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19138 | 2352 | 7 | 0 | 0 | 0 | 0 | logfile |
✘ | 6L7o | 0849 | 2023-05-14 | 2019-11-02 | 3.2 | 3.37 | — | 3.5 | 0.008 | 1.35 | 0.0 | 2.04 | 19.93 | 0.01 | 1.354 | 12.19 | 0.00 | 5.3 | 94.7 | 0.0 | -2.60 | 0.57 | 0.70 | 0.86 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35037 | 4120 | 34 | 0 | 83 | 0 | 0 | logfile |
✘ | 7E5S | 30994 | 2023-05-16 | 2021-02-20 | 3.6 | 4.22 | — | 3.6 | 0.012 | 1.41 | 23.0 | 0.10 | 10.99 | 0.01 | 1.513 | 21.26 | 1.35 | 4.5 | 95.2 | 0.3 | 0.70 | 0.65 | 0.46 | 0.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 38916 | 5038 | 31 | 0 | 24 | 0 | 0 | logfile |
✘ | 8D7R | 27231 | 2023-05-04 | 2022-06-07 | 3.9 | 4.13 | 3.91 | 4.0 | 0.003 | 0.54 | 0.0 | 0.04 | 11.99 | 0.00 | 2.345 | 5.62 | 0.00 | 8.1 | 91.9 | 0.0 | -3.25 | 0.60 | 0.56 | 0.88 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9627 | 1167 | 12 | 0 | 16 | 0 | 0 | logfile |
✘ | 7D59 | 30578 | 2023-05-16 | 2020-09-25 | 3.1 | 3.84 | — | 3.5 | 0.002 | 0.61 | 0.0 | 0.54 | 14.30 | 0.00 | 2.196 | 7.56 | 0.00 | 4.5 | 95.4 | 0.1 | -3.52 | 0.85 | 0.79 | 0.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 39898 | 5010 | 23 | 0 | 8 | 0 | 0 | logfile |
✘ | 7X28 | 32961 | 2023-05-15 | 2022-02-25 | 2.49 | 2.72 | — | 1.8 | 0.013 | 1.52 | 5.0 | 0.11 | 13.24 | 0.00 | 1.606 | 7.72 | 7.98 | 2.7 | 97.0 | 0.2 | 2.21 | 0.57 | 0.40 | 0.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 31583 | 4119 | 7 | 0 | 0 | 0 | 0 | logfile |
✘ | 7oE7 | 12861 | 2023-05-05 | 2021-05-01 | 3.73 | 3.95 | 3.97 | 3.7 | 0.002 | 0.53 | 0.0 | 0.04 | 14.33 | 0.00 | 2.084 | 3.86 | 0.00 | 6.8 | 93.2 | 0.0 | -1.48 | 0.79 | 0.64 | 0.91 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11116 | 1382 | 1 | 0 | 2 | 0 | 0 | logfile |
✘ | 5FJ8 | 3178 | 2023-05-16 | 2015-10-06 | 3.9 | 3.97 | — | 4.0 | 0.004 | 1.21 | 0.0 | 0.04 | 13.54 | 0.00 | 2.035 | 13.90 | 4.05 | 16.0 | 82.9 | 1.1 | -4.73 | 0.70 | 0.69 | 0.95 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 39284 | 4804 | 25 | 47 | 41 | 0 | 0 | logfile |
✘ | 7K9X | 22755 | 2023-05-04 | 2020-09-29 | 3.8 | 3.44 | — | 3.7 | 0.008 | 0.96 | 0.0 | 0.05 | 15.20 | 0.01 | 2.254 | 6.36 | 6.12 | 3.8 | 96.2 | 0.0 | -1.99 | 0.79 | 0.81 | 0.97 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10472 | 1372 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 7MYo | 24082 | 2023-05-04 | 2021-05-21 | 2.92 | 3.27 | 2.93 | 3.3 | 0.005 | 0.89 | 0.0 | 0.05 | 15.08 | 0.01 | 2.225 | 9.92 | 0.59 | 5.9 | 94.1 | 0.0 | -1.97 | 0.57 | 0.66 | 0.99 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10634 | 1278 | 2 | 0 | 1 | 0 | 0 | logfile |
✘ | 7oQH | 12701 | 2023-05-07 | 2021-06-03 | 3.32 | 3.46 | 3.31 | 3.4 | 0.004 | 0.62 | 0.0 | 0.04 | 13.63 | 0.01 | 1.967 | 11.39 | 0.00 | 6.5 | 93.5 | 0.0 | -0.13 | 0.72 | 0.79 | 0.99 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16824 | 2169 | 12 | 0 | 11 | 0 | 0 | logfile |
✘ | 7N4E | 24148 | 2023-05-12 | 2021-06-04 | 3.8 | 3.85 | — | 3.8 | 0.004 | 0.72 | 0.0 | 0.04 | 17.45 | 0.01 | 1.705 | 13.32 | 3.45 | 4.3 | 95.7 | 0.0 | -0.65 | 0.78 | 0.77 | 1.01 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29822 | 3559 | 10 | 89 | 3 | 0 | 0 | logfile |
✘ | 7BL3 | 12216 | 2023-05-15 | 2021-01-18 | 3.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -1.33 | — | — | 1.02 | 3.5 | 0.005 | 0.68 | 0.0 | 0.04 | 15.55 | 0.01 | 1.966 | 18.40 | 0.72 | 8.9 | 91.1 | 0.0 | -1.72 | — | 0.76 | 0.83 | 1.17 | 92831 | 3612 | 39 | 3021 | 2 | 27 | 0 | logfile |
✘ | 7P5W | 13203 | 2023-05-16 | 2021-07-15 | 3.5 | 2.99 | 3.45 | 3.0 | 0.002 | 0.49 | 0.0 | 0.04 | 11.73 | 0.00 | 2.131 | 10.96 | 3.75 | 4.4 | 95.6 | 0.0 | -0.37 | 0.72 | 0.70 | 1.03 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 41250 | 5028 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 7PKS | 13479 | 2023-05-17 | 2021-08-26 | 3.6 | 4.27 | 3.31 | 2.8 | 0.004 | 0.78 | 0.0 | 0.05 | 14.44 | 0.01 | 1.638 | 5.38 | 0.00 | 4.0 | 95.9 | 0.0 | -0.87 | 0.76 | 0.62 | 1.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 101147 | 13139 | 41 | 74 | 118 | 0 | 0 | logfile |