Table showing results for October 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	5A0Q	2981	2023-10-20	2015-04-22	3.5	3.34	—	3.3	0.019	2.22	14.0	0.11	15.42	0.02	0.702	33.75	1.99	4.5	95.1	0.4	-3.18	0.60	0.61	1.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	43448	5582	34	0	6	0	0	logfile
✘	7DX4	30895	2023-10-04	2021-01-18	3.6	3.96	—	3.8	0.007	1.00	0.0	0.06	9.71	0.01	0.766	7.28	0.23	6.0	93.7	0.3	-4.20	0.71	0.79	3.35	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8234	1027	6	0	5	0	0	logfile
✘	7S21	24815	2023-10-09	2021-09-02	3.4	3.86	—	3.8	0.006	0.78	0.0	0.04	15.50	0.01	0.827	18.73	0.00	14.6	85.4	0.0	-2.41	0.72	0.84	3.42	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	122460	15900	60	0	0	0	0	logfile
✘	5NiK	3652	2023-10-17	2017-03-24	3.3	3.47	—	3.4	0.010	1.29	0.0	0.04	10.30	0.01	0.941	22.00	0.24	6.4	91.6	1.9	-1.88	0.64	0.59	1.09	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	35215	4582	11	0	0	0	0	logfile
✘	8E6Z	27931	2023-10-19	2022-08-23	4.1	4.60	4.10	4.0	0.010	1.19	5.0	0.07	15.55	0.01	1.038	16.64	4.31	8.8	90.6	0.6	-4.36	0.74	0.58	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	39505	3358	10	97	3	0	11239	logfile
✘	8E6X	27930	2023-10-19	2022-08-23	4.27	4.49	4.25	3.9	0.010	1.19	6.0	0.07	15.40	0.01	1.038	16.48	4.27	8.7	90.7	0.6	-4.35	0.74	0.57	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	39532	3361	10	97	3	0	11239	logfile
✘	6iGM	9668	2023-10-12	2018-09-25	4.0	4.14	—	4.1	0.004	0.88	0.0	0.05	10.13	0.01	1.054	20.78	2.70	7.3	91.6	1.1	-4.30	0.70	0.62	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24257	3054	9	0	62	0	0	logfile
✘	5GJQ	9511	2023-10-18	2016-07-01	4.35	4.02	—	3.8	0.016	1.83	29.0	0.09	16.70	0.01	1.073	47.82	10.02	11.3	84.5	4.2	-4.17	0.79	0.73	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	98461	13520	54	0	6	0	0	logfile
✘	7UFM	26477	2023-10-17	2022-03-22	3.9	2.97	4.04	1.8	0.009	1.77	14.0	0.08	22.53	0.01	1.075	9.26	24.41	11.0	89.0	0.0	-4.66	0.68	0.65	0.50	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	36392	4354	30	72	14	0	0	logfile
✘	5W65	8775	2023-10-20	2017-06-16	4.3	4.07	—	3.9	0.009	1.65	79.0	0.10	14.73	0.01	1.089	88.79	4.61	8.9	86.3	4.8	-3.52	0.74	0.65	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	47308	5599	26	105	60	0	0	logfile
✘	5Y88	6817	2023-10-11	2017-08-20	3.46	3.56	—	3.5	0.011	1.45	25.0	0.11	15.50	0.01	1.112	25.56	5.35	6.2	92.6	1.2	-2.93	0.54	0.64	1.91	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72347	9113	50	337	14	0	0	logfile
✘	5XJC	6721	2023-10-06	2017-04-30	3.6	3.69	3.82	3.6	0.013	1.58	25.0	0.10	16.70	0.01	1.113	24.22	8.13	4.9	93.3	1.8	-1.84	0.46	0.53	1.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	116421	14184	59	405	24	0	0	logfile
✘	5GJR	9512	2023-10-18	2016-07-01	3.5	3.65	—	3.5	0.013	1.53	38.0	0.08	16.77	0.01	1.114	63.72	11.56	13.2	81.8	5.0	-4.66	0.71	0.77	1.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	142753	19945	76	0	12	0	0	logfile
✘	7BP0	30138	2023-10-19	2020-03-20	4.6	4.05	—	4.2	0.014	2.51	229.0	0.17	20.41	0.02	1.115	151.43	28.18	10.1	84.8	5.1	-1.64	0.62	0.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	41388	5244	12	0	0	0	0	logfile
✘	5YZG	6864	2023-10-20	2017-12-14	4.1	4.23	4.20	4.1	0.016	1.80	42.0	0.12	16.14	0.01	1.129	26.62	8.31	4.8	93.5	1.7	-1.79	0.57	0.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	103906	15211	63	408	19	0	0	logfile
✘	5H64	6668	2023-10-20	2016-11-10	4.4	3.65	—	3.4	0.011	1.57	0.0	0.07	11.97	0.01	1.144	72.33	0.80	17.3	80.2	2.4	-5.94	0.74	0.55	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	45252	6430	6	0	0	0	0	logfile
✘	7PiJ	13438	2023-10-03	2021-08-20	3.78	4.14	—	4.1	0.015	1.17	0.0	0.05	13.54	0.01	1.166	13.45	0.11	10.6	89.3	0.1	-3.26	0.50	0.53	1.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8194	1068	8	0	0	16	0	logfile
✘	6RAW	4785	2023-10-19	2019-04-08	3.7	3.80	3.66	4.1	0.007	1.29	19.0	0.13	18.21	0.01	1.198	17.63	6.37	18.9	80.8	0.3	-5.55	0.47	0.49	0.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	39710	4877	18	39	6	0	0	logfile
✘	3JC6	6534	2023-10-11	2015-11-24	3.7	4.01	—	3.9	0.009	1.54	0.0	0.06	12.91	0.01	1.203	39.73	0.87	9.8	89.0	1.1	-3.87	0.79	0.76	1.43	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23732	2953	12	0	1	0	0	logfile
✘	7JZ6	22530	2023-10-10	2020-09-01	2.53	2.20	—	2.2	0.009	1.04	8.0	0.11	19.13	0.01	1.219	8.05	11.17	7.8	92.2	0.0	-3.03	0.58	0.65	2.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20842	2646	12	0	4	18	0	logfile

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