Table showing results for May 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	4UY8	2773	2023-05-15	2014-08-29	3.8	4.07	—	4.1	0.010	1.50	8.0	0.07	15.49	0.01	0.879	12.34	11.16	16.3	76.9	6.8	-5.04	0.53	0.64	0.36	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	92995	3468	47	3049	144	439	8	logfile
✘	5NiK	3652	2023-05-14	2017-03-24	3.3	3.47	—	3.4	0.010	1.29	0.0	0.04	10.30	0.01	0.941	22.00	0.24	6.4	91.6	1.9	-1.88	0.64	0.59	1.09	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	35215	4582	11	0	0	0	0	logfile
✘	6EM1	3893	2023-05-16	2017-10-01	3.6	3.71	—	3.6	0.009	1.37	48.0	0.11	18.65	0.01	0.990	8.28	9.41	9.4	87.5	3.1	-4.15	0.79	0.83	1.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	99980	7072	45	2008	2	0	0	logfile
✘	7QXX	14205	2023-05-17	2022-01-27	4.4	4.95	—	4.7	0.009	1.22	5.0	0.06	11.93	0.01	1.006	17.58	1.25	9.8	89.8	0.4	-4.44	0.82	0.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	100121	12891	53	0	12	0	0	logfile
✘	7QY7	14209	2023-05-16	2022-01-27	4.7	5.28	—	4.8	0.007	1.21	6.0	0.06	11.80	0.01	1.015	21.97	1.70	10.3	88.9	0.8	-4.62	0.85	0.74	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	99911	12865	51	0	6	0	0	logfile
✘	7oPE	13017	2023-05-15	2021-05-31	3.2	5.30	3.21	5.0	0.011	1.04	2.0	0.06	15.48	0.01	1.028	4.81	0.23	8.2	91.6	0.2	-3.62	0.89	0.72	-0.03	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	93862	3818	33	2996	0	0	0	logfile
✘	6RAY	4787	2023-05-16	2019-04-08	4.28	4.39	4.31	4.4	0.013	1.77	39.0	0.16	18.46	0.02	1.031	19.77	7.45	17.4	81.8	0.8	-5.68	0.58	0.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	39071	4887	18	13	6	0	0	logfile
✘	8E6Z	27931	2023-05-16	2022-08-23	4.1	4.60	4.10	4.0	0.010	1.19	5.0	0.07	15.55	0.01	1.038	16.64	4.31	8.8	90.6	0.6	-4.36	0.74	0.58	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	39505	3358	10	97	3	0	11239	logfile
✘	8E6X	27930	2023-05-16	2022-08-23	4.27	4.49	4.25	3.9	0.010	1.19	6.0	0.07	15.40	0.01	1.038	16.48	4.27	8.7	90.7	0.6	-4.35	0.74	0.57	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	39532	3361	10	97	3	0	11239	logfile
✘	5XTC	6772	2023-05-15	2017-06-19	3.7	3.85	—	3.7	0.014	1.55	1.0	0.07	12.55	0.01	1.049	26.41	1.20	6.4	90.9	2.8	-1.64	0.74	0.82	2.90	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	38835	4701	40	0	19	0	0	logfile
✘	6iGM	9668	2023-05-10	2018-09-25	4.0	4.14	—	4.1	0.004	0.88	0.0	0.05	10.13	0.01	1.054	20.78	2.70	7.3	91.6	1.1	-4.30	0.70	0.62	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24257	3054	9	0	62	0	0	logfile
✘	5M64	3449	2023-05-15	2016-10-24	4.6	4.57	—	4.5	0.003	0.69	2.0	0.05	12.90	0.00	1.067	13.00	2.03	4.9	95.0	0.1	-4.55	0.71	0.64	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	35876	4383	22	51	6	0	0	logfile
✘	5GJQ	9511	2023-05-16	2016-07-01	4.35	4.02	—	3.8	0.016	1.83	29.0	0.09	16.70	0.01	1.073	47.82	10.02	11.3	84.5	4.2	-4.17	0.79	0.73	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	98461	13520	54	0	6	0	0	logfile
✘	7UFM	26477	2023-05-15	2022-03-22	3.9	2.97	4.04	1.8	0.009	1.77	14.0	0.08	22.53	0.01	1.075	9.26	24.41	11.0	89.0	0.0	-4.66	0.68	0.65	0.50	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	36392	4354	30	72	14	0	0	logfile
✘	7CAK	30333	2023-05-12	2020-06-08	3.58	3.74	—	3.5	0.027	1.67	3.0	0.09	11.56	0.01	1.082	48.79	1.80	9.4	89.8	0.8	-4.79	0.72	0.69	2.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30263	3771	27	0	60	0	0	logfile
✘	5Y88	6817	2023-05-10	2017-08-20	3.46	3.56	—	3.5	0.011	1.45	25.0	0.11	15.50	0.01	1.112	25.56	5.35	6.2	92.6	1.2	-2.93	0.54	0.64	1.91	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72347	9113	50	337	14	0	0	logfile
✘	5XJC	6721	2023-05-06	2017-04-30	3.6	3.69	3.82	3.6	0.013	1.58	25.0	0.10	16.70	0.01	1.113	24.22	8.13	4.9	93.3	1.8	-1.84	0.46	0.53	1.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	116421	14184	59	405	24	0	0	logfile
✘	5GJR	9512	2023-05-16	2016-07-01	3.5	3.65	—	3.5	0.013	1.53	38.0	0.08	16.77	0.01	1.114	63.72	11.56	13.2	81.8	5.0	-4.66	0.71	0.77	1.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	142753	19945	76	0	12	0	0	logfile
✘	7BP0	30138	2023-05-16	2020-03-20	4.6	4.05	—	4.2	0.014	2.51	229.0	0.17	20.41	0.02	1.115	151.43	28.18	10.1	84.8	5.1	-1.64	0.62	0.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	41388	5244	12	0	0	0	0	logfile
✘	7PiJ	13438	2023-05-03	2021-08-20	3.78	4.14	—	4.1	0.015	1.17	0.0	0.05	13.54	0.01	1.166	13.45	0.11	10.6	89.3	0.1	-3.26	0.50	0.53	1.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8194	1068	8	0	0	16	0	logfile

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