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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 5A0Q | 2981 | 2023-10-20 | 2015-04-22 | 3.5 | 3.34 | — | 3.3 | 0.019 | 2.22 | 14.0 | 0.11 | 15.42 | 0.02 | 0.702 | 33.75 | 1.99 | 4.5 | 95.1 | 0.4 | -3.18 | 0.60 | 0.61 | 1.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 43448 | 5582 | 34 | 0 | 6 | 0 | 0 | logfile |
✘ | 7DX4 | 30895 | 2023-10-04 | 2021-01-18 | 3.6 | 3.96 | — | 3.8 | 0.007 | 1.00 | 0.0 | 0.06 | 9.71 | 0.01 | 0.766 | 7.28 | 0.23 | 6.0 | 93.7 | 0.3 | -4.20 | 0.71 | 0.79 | 3.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8234 | 1027 | 6 | 0 | 5 | 0 | 0 | logfile |
✘ | 7S21 | 24815 | 2023-10-09 | 2021-09-02 | 3.4 | 3.86 | — | 3.8 | 0.006 | 0.78 | 0.0 | 0.04 | 15.50 | 0.01 | 0.827 | 18.73 | 0.00 | 14.6 | 85.4 | 0.0 | -2.41 | 0.72 | 0.84 | 3.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 122460 | 15900 | 60 | 0 | 0 | 0 | 0 | logfile |
✘ | 5NiK | 3652 | 2023-10-17 | 2017-03-24 | 3.3 | 3.47 | — | 3.4 | 0.010 | 1.29 | 0.0 | 0.04 | 10.30 | 0.01 | 0.941 | 22.00 | 0.24 | 6.4 | 91.6 | 1.9 | -1.88 | 0.64 | 0.59 | 1.09 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35215 | 4582 | 11 | 0 | 0 | 0 | 0 | logfile |
✘ | 8E6Z | 27931 | 2023-10-19 | 2022-08-23 | 4.1 | 4.60 | 4.10 | 4.0 | 0.010 | 1.19 | 5.0 | 0.07 | 15.55 | 0.01 | 1.038 | 16.64 | 4.31 | 8.8 | 90.6 | 0.6 | -4.36 | 0.74 | 0.58 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 39505 | 3358 | 10 | 97 | 3 | 0 | 11239 | logfile |
✘ | 8E6X | 27930 | 2023-10-19 | 2022-08-23 | 4.27 | 4.49 | 4.25 | 3.9 | 0.010 | 1.19 | 6.0 | 0.07 | 15.40 | 0.01 | 1.038 | 16.48 | 4.27 | 8.7 | 90.7 | 0.6 | -4.35 | 0.74 | 0.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 39532 | 3361 | 10 | 97 | 3 | 0 | 11239 | logfile |
✘ | 6iGM | 9668 | 2023-10-12 | 2018-09-25 | 4.0 | 4.14 | — | 4.1 | 0.004 | 0.88 | 0.0 | 0.05 | 10.13 | 0.01 | 1.054 | 20.78 | 2.70 | 7.3 | 91.6 | 1.1 | -4.30 | 0.70 | 0.62 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24257 | 3054 | 9 | 0 | 62 | 0 | 0 | logfile |
✘ | 5GJQ | 9511 | 2023-10-18 | 2016-07-01 | 4.35 | 4.02 | — | 3.8 | 0.016 | 1.83 | 29.0 | 0.09 | 16.70 | 0.01 | 1.073 | 47.82 | 10.02 | 11.3 | 84.5 | 4.2 | -4.17 | 0.79 | 0.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 98461 | 13520 | 54 | 0 | 6 | 0 | 0 | logfile |
✘ | 7UFM | 26477 | 2023-10-17 | 2022-03-22 | 3.9 | 2.97 | 4.04 | 1.8 | 0.009 | 1.77 | 14.0 | 0.08 | 22.53 | 0.01 | 1.075 | 9.26 | 24.41 | 11.0 | 89.0 | 0.0 | -4.66 | 0.68 | 0.65 | 0.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36392 | 4354 | 30 | 72 | 14 | 0 | 0 | logfile |
✘ | 5W65 | 8775 | 2023-10-20 | 2017-06-16 | 4.3 | 4.07 | — | 3.9 | 0.009 | 1.65 | 79.0 | 0.10 | 14.73 | 0.01 | 1.089 | 88.79 | 4.61 | 8.9 | 86.3 | 4.8 | -3.52 | 0.74 | 0.65 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 47308 | 5599 | 26 | 105 | 60 | 0 | 0 | logfile |
✘ | 5Y88 | 6817 | 2023-10-11 | 2017-08-20 | 3.46 | 3.56 | — | 3.5 | 0.011 | 1.45 | 25.0 | 0.11 | 15.50 | 0.01 | 1.112 | 25.56 | 5.35 | 6.2 | 92.6 | 1.2 | -2.93 | 0.54 | 0.64 | 1.91 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72347 | 9113 | 50 | 337 | 14 | 0 | 0 | logfile |
✘ | 5XJC | 6721 | 2023-10-06 | 2017-04-30 | 3.6 | 3.69 | 3.82 | 3.6 | 0.013 | 1.58 | 25.0 | 0.10 | 16.70 | 0.01 | 1.113 | 24.22 | 8.13 | 4.9 | 93.3 | 1.8 | -1.84 | 0.46 | 0.53 | 1.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 116421 | 14184 | 59 | 405 | 24 | 0 | 0 | logfile |
✘ | 5GJR | 9512 | 2023-10-18 | 2016-07-01 | 3.5 | 3.65 | — | 3.5 | 0.013 | 1.53 | 38.0 | 0.08 | 16.77 | 0.01 | 1.114 | 63.72 | 11.56 | 13.2 | 81.8 | 5.0 | -4.66 | 0.71 | 0.77 | 1.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 142753 | 19945 | 76 | 0 | 12 | 0 | 0 | logfile |
✘ | 7BP0 | 30138 | 2023-10-19 | 2020-03-20 | 4.6 | 4.05 | — | 4.2 | 0.014 | 2.51 | 229.0 | 0.17 | 20.41 | 0.02 | 1.115 | 151.43 | 28.18 | 10.1 | 84.8 | 5.1 | -1.64 | 0.62 | 0.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 41388 | 5244 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 5YZG | 6864 | 2023-10-20 | 2017-12-14 | 4.1 | 4.23 | 4.20 | 4.1 | 0.016 | 1.80 | 42.0 | 0.12 | 16.14 | 0.01 | 1.129 | 26.62 | 8.31 | 4.8 | 93.5 | 1.7 | -1.79 | 0.57 | 0.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 103906 | 15211 | 63 | 408 | 19 | 0 | 0 | logfile |
✘ | 5H64 | 6668 | 2023-10-20 | 2016-11-10 | 4.4 | 3.65 | — | 3.4 | 0.011 | 1.57 | 0.0 | 0.07 | 11.97 | 0.01 | 1.144 | 72.33 | 0.80 | 17.3 | 80.2 | 2.4 | -5.94 | 0.74 | 0.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 45252 | 6430 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 7PiJ | 13438 | 2023-10-03 | 2021-08-20 | 3.78 | 4.14 | — | 4.1 | 0.015 | 1.17 | 0.0 | 0.05 | 13.54 | 0.01 | 1.166 | 13.45 | 0.11 | 10.6 | 89.3 | 0.1 | -3.26 | 0.50 | 0.53 | 1.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8194 | 1068 | 8 | 0 | 0 | 16 | 0 | logfile |
✘ | 6RAW | 4785 | 2023-10-19 | 2019-04-08 | 3.7 | 3.80 | 3.66 | 4.1 | 0.007 | 1.29 | 19.0 | 0.13 | 18.21 | 0.01 | 1.198 | 17.63 | 6.37 | 18.9 | 80.8 | 0.3 | -5.55 | 0.47 | 0.49 | 0.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 39710 | 4877 | 18 | 39 | 6 | 0 | 0 | logfile |
✘ | 3JC6 | 6534 | 2023-10-11 | 2015-11-24 | 3.7 | 4.01 | — | 3.9 | 0.009 | 1.54 | 0.0 | 0.06 | 12.91 | 0.01 | 1.203 | 39.73 | 0.87 | 9.8 | 89.0 | 1.1 | -3.87 | 0.79 | 0.76 | 1.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23732 | 2953 | 12 | 0 | 1 | 0 | 0 | logfile |
✘ | 7JZ6 | 22530 | 2023-10-10 | 2020-09-01 | 2.53 | 2.20 | — | 2.2 | 0.009 | 1.04 | 8.0 | 0.11 | 19.13 | 0.01 | 1.219 | 8.05 | 11.17 | 7.8 | 92.2 | 0.0 | -3.03 | 0.58 | 0.65 | 2.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20842 | 2646 | 12 | 0 | 4 | 18 | 0 | logfile |