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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 4UY8 | 2773 | 2023-05-15 | 2014-08-29 | 3.8 | 4.07 | — | 4.1 | 0.010 | 1.50 | 8.0 | 0.07 | 15.49 | 0.01 | 0.879 | 12.34 | 11.16 | 16.3 | 76.9 | 6.8 | -5.04 | 0.53 | 0.64 | 0.36 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 92995 | 3468 | 47 | 3049 | 144 | 439 | 8 | logfile |
✘ | 5NiK | 3652 | 2023-05-14 | 2017-03-24 | 3.3 | 3.47 | — | 3.4 | 0.010 | 1.29 | 0.0 | 0.04 | 10.30 | 0.01 | 0.941 | 22.00 | 0.24 | 6.4 | 91.6 | 1.9 | -1.88 | 0.64 | 0.59 | 1.09 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35215 | 4582 | 11 | 0 | 0 | 0 | 0 | logfile |
✘ | 6EM1 | 3893 | 2023-05-16 | 2017-10-01 | 3.6 | 3.71 | — | 3.6 | 0.009 | 1.37 | 48.0 | 0.11 | 18.65 | 0.01 | 0.990 | 8.28 | 9.41 | 9.4 | 87.5 | 3.1 | -4.15 | 0.79 | 0.83 | 1.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 99980 | 7072 | 45 | 2008 | 2 | 0 | 0 | logfile |
✘ | 7QXX | 14205 | 2023-05-17 | 2022-01-27 | 4.4 | 4.95 | — | 4.7 | 0.009 | 1.22 | 5.0 | 0.06 | 11.93 | 0.01 | 1.006 | 17.58 | 1.25 | 9.8 | 89.8 | 0.4 | -4.44 | 0.82 | 0.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 100121 | 12891 | 53 | 0 | 12 | 0 | 0 | logfile |
✘ | 7QY7 | 14209 | 2023-05-16 | 2022-01-27 | 4.7 | 5.28 | — | 4.8 | 0.007 | 1.21 | 6.0 | 0.06 | 11.80 | 0.01 | 1.015 | 21.97 | 1.70 | 10.3 | 88.9 | 0.8 | -4.62 | 0.85 | 0.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 99911 | 12865 | 51 | 0 | 6 | 0 | 0 | logfile |
✘ | 7oPE | 13017 | 2023-05-15 | 2021-05-31 | 3.2 | 5.30 | 3.21 | 5.0 | 0.011 | 1.04 | 2.0 | 0.06 | 15.48 | 0.01 | 1.028 | 4.81 | 0.23 | 8.2 | 91.6 | 0.2 | -3.62 | 0.89 | 0.72 | -0.03 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 93862 | 3818 | 33 | 2996 | 0 | 0 | 0 | logfile |
✘ | 6RAY | 4787 | 2023-05-16 | 2019-04-08 | 4.28 | 4.39 | 4.31 | 4.4 | 0.013 | 1.77 | 39.0 | 0.16 | 18.46 | 0.02 | 1.031 | 19.77 | 7.45 | 17.4 | 81.8 | 0.8 | -5.68 | 0.58 | 0.59 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 39071 | 4887 | 18 | 13 | 6 | 0 | 0 | logfile |
✘ | 8E6Z | 27931 | 2023-05-16 | 2022-08-23 | 4.1 | 4.60 | 4.10 | 4.0 | 0.010 | 1.19 | 5.0 | 0.07 | 15.55 | 0.01 | 1.038 | 16.64 | 4.31 | 8.8 | 90.6 | 0.6 | -4.36 | 0.74 | 0.58 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 39505 | 3358 | 10 | 97 | 3 | 0 | 11239 | logfile |
✘ | 8E6X | 27930 | 2023-05-16 | 2022-08-23 | 4.27 | 4.49 | 4.25 | 3.9 | 0.010 | 1.19 | 6.0 | 0.07 | 15.40 | 0.01 | 1.038 | 16.48 | 4.27 | 8.7 | 90.7 | 0.6 | -4.35 | 0.74 | 0.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 39532 | 3361 | 10 | 97 | 3 | 0 | 11239 | logfile |
✘ | 5XTC | 6772 | 2023-05-15 | 2017-06-19 | 3.7 | 3.85 | — | 3.7 | 0.014 | 1.55 | 1.0 | 0.07 | 12.55 | 0.01 | 1.049 | 26.41 | 1.20 | 6.4 | 90.9 | 2.8 | -1.64 | 0.74 | 0.82 | 2.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 38835 | 4701 | 40 | 0 | 19 | 0 | 0 | logfile |
✘ | 6iGM | 9668 | 2023-05-10 | 2018-09-25 | 4.0 | 4.14 | — | 4.1 | 0.004 | 0.88 | 0.0 | 0.05 | 10.13 | 0.01 | 1.054 | 20.78 | 2.70 | 7.3 | 91.6 | 1.1 | -4.30 | 0.70 | 0.62 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24257 | 3054 | 9 | 0 | 62 | 0 | 0 | logfile |
✘ | 5M64 | 3449 | 2023-05-15 | 2016-10-24 | 4.6 | 4.57 | — | 4.5 | 0.003 | 0.69 | 2.0 | 0.05 | 12.90 | 0.00 | 1.067 | 13.00 | 2.03 | 4.9 | 95.0 | 0.1 | -4.55 | 0.71 | 0.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35876 | 4383 | 22 | 51 | 6 | 0 | 0 | logfile |
✘ | 5GJQ | 9511 | 2023-05-16 | 2016-07-01 | 4.35 | 4.02 | — | 3.8 | 0.016 | 1.83 | 29.0 | 0.09 | 16.70 | 0.01 | 1.073 | 47.82 | 10.02 | 11.3 | 84.5 | 4.2 | -4.17 | 0.79 | 0.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 98461 | 13520 | 54 | 0 | 6 | 0 | 0 | logfile |
✘ | 7UFM | 26477 | 2023-05-15 | 2022-03-22 | 3.9 | 2.97 | 4.04 | 1.8 | 0.009 | 1.77 | 14.0 | 0.08 | 22.53 | 0.01 | 1.075 | 9.26 | 24.41 | 11.0 | 89.0 | 0.0 | -4.66 | 0.68 | 0.65 | 0.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36392 | 4354 | 30 | 72 | 14 | 0 | 0 | logfile |
✘ | 7CAK | 30333 | 2023-05-12 | 2020-06-08 | 3.58 | 3.74 | — | 3.5 | 0.027 | 1.67 | 3.0 | 0.09 | 11.56 | 0.01 | 1.082 | 48.79 | 1.80 | 9.4 | 89.8 | 0.8 | -4.79 | 0.72 | 0.69 | 2.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30263 | 3771 | 27 | 0 | 60 | 0 | 0 | logfile |
✘ | 5Y88 | 6817 | 2023-05-10 | 2017-08-20 | 3.46 | 3.56 | — | 3.5 | 0.011 | 1.45 | 25.0 | 0.11 | 15.50 | 0.01 | 1.112 | 25.56 | 5.35 | 6.2 | 92.6 | 1.2 | -2.93 | 0.54 | 0.64 | 1.91 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72347 | 9113 | 50 | 337 | 14 | 0 | 0 | logfile |
✘ | 5XJC | 6721 | 2023-05-06 | 2017-04-30 | 3.6 | 3.69 | 3.82 | 3.6 | 0.013 | 1.58 | 25.0 | 0.10 | 16.70 | 0.01 | 1.113 | 24.22 | 8.13 | 4.9 | 93.3 | 1.8 | -1.84 | 0.46 | 0.53 | 1.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 116421 | 14184 | 59 | 405 | 24 | 0 | 0 | logfile |
✘ | 5GJR | 9512 | 2023-05-16 | 2016-07-01 | 3.5 | 3.65 | — | 3.5 | 0.013 | 1.53 | 38.0 | 0.08 | 16.77 | 0.01 | 1.114 | 63.72 | 11.56 | 13.2 | 81.8 | 5.0 | -4.66 | 0.71 | 0.77 | 1.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 142753 | 19945 | 76 | 0 | 12 | 0 | 0 | logfile |
✘ | 7BP0 | 30138 | 2023-05-16 | 2020-03-20 | 4.6 | 4.05 | — | 4.2 | 0.014 | 2.51 | 229.0 | 0.17 | 20.41 | 0.02 | 1.115 | 151.43 | 28.18 | 10.1 | 84.8 | 5.1 | -1.64 | 0.62 | 0.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 41388 | 5244 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 7PiJ | 13438 | 2023-05-03 | 2021-08-20 | 3.78 | 4.14 | — | 4.1 | 0.015 | 1.17 | 0.0 | 0.05 | 13.54 | 0.01 | 1.166 | 13.45 | 0.11 | 10.6 | 89.3 | 0.1 | -3.26 | 0.50 | 0.53 | 1.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8194 | 1068 | 8 | 0 | 0 | 16 | 0 | logfile |