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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6YEF | 10791 | 2023-10-17 | 2020-03-24 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 141837 | 5351 | 60 | 4639 | 288 | 0 | 0 | logfile |
✘ | 7T6X | 25730 | 2023-10-04 | 2021-12-14 | 3.83 | 4.14 | 3.83 | 4.0 | 0.022 | 1.97 | 0.0 | 0.13 | 9.71 | 0.02 | 1.505 | 3.89 | 0.00 | 3.8 | 96.1 | 0.1 | -0.16 | 0.77 | 0.82 | 2.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9217 | 1140 | 19 | 0 | 37 | 0 | 0 | logfile |
✘ | 7YQ6 | 34021 | 2023-10-07 | 2022-08-05 | 4.18 | 4.67 | 4.33 | 4.4 | 0.019 | 1.34 | 0.0 | 0.06 | 17.92 | 0.03 | 2.222 | 7.46 | 0.35 | 8.5 | 91.5 | 0.0 | -3.94 | 0.84 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13990 | 1592 | 4 | 48 | 0 | 0 | 0 | logfile |
✘ | 3JAP | 3048 | 2023-10-18 | 2015-06-18 | 4.9 | 5.03 | 5.08 | 5.0 | 0.007 | 1.39 | 79.0 | 0.11 | 22.42 | 0.01 | 1.307 | 9.48 | 13.17 | 10.9 | 85.8 | 3.4 | -1.68 | 0.68 | 0.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 98333 | 7272 | 53 | 1869 | 255 | 0 | 0 | logfile |
✘ | 7RWA | 24712 | 2023-10-08 | 2021-08-19 | 4.7 | 5.66 | 4.89 | 4.6 | 0.003 | 0.89 | 0.0 | 0.05 | 5.84 | 0.00 | 1.914 | 2.65 | 0.00 | 5.8 | 93.7 | 0.5 | -0.12 | 0.84 | 0.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16158 | 3244 | 10 | 0 | 0 | 0 | 0 | logfile |
✘ | 6UZZ | 20965 | 2023-10-08 | 2019-11-16 | 3.1 | 3.48 | — | 3.4 | 0.009 | 0.92 | 0.0 | 0.06 | 10.61 | 0.01 | 2.325 | 2.53 | 0.24 | 1.8 | 98.0 | 0.2 | -4.22 | 0.60 | 0.81 | 3.12 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15832 | 1984 | 12 | 0 | 8 | 0 | 0 | logfile |
✘ | 7KE9 | 22835 | 2023-10-11 | 2020-10-10 | 3.08 | 3.62 | — | 3.5 | 0.013 | 1.74 | 0.0 | 0.09 | 12.23 | 0.01 | 2.491 | 0.11 | 0.04 | 5.8 | 94.0 | 0.2 | -0.81 | 0.80 | 0.80 | 4.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22365 | 2875 | 18 | 0 | 59 | 0 | 0 | logfile |
✘ | 7WTM | 32791 | 2023-10-20 | 2022-02-05 | 3.5 | 3.32 | — | 3.2 | 0.006 | 0.89 | 0.0 | 0.05 | 15.98 | 0.01 | 2.110 | 6.36 | 0.00 | 7.6 | 92.4 | 0.1 | -1.86 | 0.80 | 0.78 | 2.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 44623 | 2651 | 18 | 1106 | 1 | 0 | 0 | logfile |
✘ | 7LN4 | 23448 | 2023-10-17 | 2021-02-06 | 3.0 | 3.91 | 3.03 | 3.5 | 0.009 | 0.65 | 0.0 | 0.04 | 12.72 | 0.01 | 2.019 | 7.53 | 0.03 | 2.1 | 97.9 | 0.0 | 1.49 | 0.80 | 0.71 | 1.59 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35094 | 4432 | 13 | 0 | 42 | 0 | 0 | logfile |
✘ | 7LWJ | 23547 | 2023-10-11 | 2021-03-01 | 3.24 | 3.45 | — | 3.3 | 0.014 | 1.83 | 2.0 | 0.10 | 13.55 | 0.01 | 2.482 | 0.34 | 0.84 | 7.0 | 92.8 | 0.2 | -1.78 | 0.70 | 0.68 | 1.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23840 | 3003 | 6 | 0 | 30 | 0 | 0 | logfile |
✘ | 8B5L | 15860 | 2023-10-18 | 2022-09-23 | 2.86 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 145148 | 7621 | 64 | 3890 | 183 | 0 | 0 | logfile |
✘ | 7ZJ7 | 14743 | 2023-10-06 | 2022-04-08 | 3.95 | 4.15 | 3.84 | 4.0 | 0.013 | 1.90 | 0.0 | 0.09 | 15.37 | 0.02 | 2.329 | 1.87 | 0.55 | 4.8 | 95.2 | 0.0 | -3.03 | 0.80 | 0.81 | 2.04 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11958 | 1458 | 18 | 0 | 36 | 0 | 0 | logfile |
✘ | 6Zoo | 11326 | 2023-10-18 | 2020-07-07 | 2.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 38497 | 3341 | 33 | 0 | 243 | 2 | 0 | logfile |
✘ | 7WoR | 32656 | 2023-10-14 | 2022-01-22 | 3.7 | 2.87 | — | 3.2 | 0.003 | 0.53 | 0.0 | 0.05 | 9.19 | 0.01 | 2.216 | 8.02 | 5.34 | 7.7 | 92.2 | 0.1 | -4.04 | 0.72 | 0.71 | 1.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29670 | 3799 | 9 | 0 | 23 | 0 | 0 | logfile |
✘ | 8DK2 | 27481 | 2023-10-11 | 2022-07-01 | 4.1 | 4.81 | 4.17 | 4.1 | 0.002 | 0.47 | 0.0 | 0.04 | 13.54 | 0.00 | 1.988 | 7.72 | 2.88 | 3.7 | 96.3 | 0.0 | 2.05 | 0.84 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23727 | 2840 | 12 | 52 | 4 | 0 | 0 | logfile |
✘ | 6KAF | 9957 | 2023-10-20 | 2019-06-22 | 3.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 104363 | 9607 | 104 | 0 | 552 | 0 | 0 | logfile |
✘ | 6Vi0 | 21208 | 2023-10-10 | 2020-01-10 | 3.43 | 3.96 | 3.49 | 3.8 | 0.008 | 1.12 | 3.0 | 0.10 | 13.99 | 0.01 | 2.241 | 6.11 | 1.23 | 7.8 | 92.0 | 0.2 | -5.43 | 0.80 | 0.83 | 2.34 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20823 | 2418 | 45 | 0 | 135 | 0 | 0 | logfile |
✘ | 7NAP | 24277 | 2023-10-10 | 2021-06-22 | 3.2 | 3.90 | — | 3.6 | 0.005 | 0.74 | 0.0 | 0.05 | 13.06 | 0.01 | 2.090 | 2.71 | 0.00 | 1.2 | 98.7 | 0.1 | 1.23 | 0.86 | 0.84 | 2.15 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 69762 | 9240 | 42 | 0 | 0 | 0 | 0 | logfile |
✘ | 6L7o | 0849 | 2023-10-17 | 2019-11-02 | 3.2 | 3.37 | — | 3.5 | 0.008 | 1.35 | 0.0 | 2.04 | 19.93 | 0.01 | 1.354 | 12.19 | 0.00 | 5.3 | 94.7 | 0.0 | -2.60 | 0.57 | 0.70 | 0.86 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35037 | 4120 | 34 | 0 | 83 | 0 | 0 | logfile |
✘ | 6JPA | 9868 | 2023-10-11 | 2019-03-26 | 2.6 | 2.76 | — | 2.8 | 0.013 | 1.51 | 3.0 | 0.12 | 17.16 | 0.01 | 1.921 | 38.35 | 11.40 | 8.8 | 89.5 | 1.7 | -3.83 | 0.54 | 0.61 | 1.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22232 | 2694 | 14 | 0 | 42 | 0 | 0 | logfile |