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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8AG5 | 15416 | 2024-01-20 | 2022-07-19 | 3.47 | 2.11 | — | 1.9 | 0.003 | 0.49 | 0.0 | 0.04 | 17.82 | 0.00 | 2.194 | 6.46 | 0.26 | 3.8 | 96.2 | 0.0 | 0.35 | 0.75 | 0.75 | 3.20 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13762 | 1703 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 8CTK | 26993 | 2024-01-17 | 2022-05-15 | 3.52 | 3.87 | 3.55 | 3.9 | 0.003 | 0.69 | 0.0 | 0.05 | 14.37 | 0.00 | 2.347 | 4.69 | 0.00 | 3.8 | 96.2 | 0.0 | -1.07 | 0.54 | 0.70 | 0.86 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3042 | 376 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 7PCQ | 13325 | 2024-01-18 | 2021-08-03 | 3.62 | 4.96 | 3.71 | 4.1 | 0.013 | 1.55 | 0.0 | 0.10 | 13.62 | 0.01 | 2.557 | 1.30 | 0.78 | 2.8 | 97.2 | 0.0 | 1.72 | 0.91 | 0.78 | 1.86 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7350 | 911 | 9 | 0 | 4 | 0 | 0 | logfile |
✘ | 6UYE | 20947 | 2024-01-20 | 2019-11-13 | 3.96 | 4.39 | — | 4.3 | 0.010 | 1.11 | 0.0 | 0.06 | 13.54 | 0.01 | 2.260 | 4.79 | 0.00 | 5.7 | 94.3 | 0.0 | -3.06 | 0.77 | 0.81 | 2.44 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13692 | 1686 | 24 | 0 | 39 | 0 | 0 | logfile |
✘ | 8FWK | 29511 | 2024-01-18 | 2023-01-22 | 3.5 | 4.25 | 3.71 | 4.0 | 0.005 | 1.07 | 2.0 | 0.06 | 12.40 | 0.01 | 2.289 | 13.87 | 1.29 | 11.6 | 87.2 | 1.2 | -4.60 | 0.66 | 0.72 | 0.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9462 | 1194 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 8CSW | 26973 | 2024-01-17 | 2022-05-13 | 2.5 | 2.22 | 2.46 | 2.3 | 0.007 | 0.86 | 0.0 | 0.06 | 14.46 | 0.01 | 2.219 | 5.03 | 2.33 | 1.2 | 98.8 | 0.0 | 0.83 | 0.64 | 0.88 | 6.02 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5332 | 657 | 1 | 0 | 0 | 165 | 0 | logfile |
✘ | 8EMH | 28248 | 2024-01-20 | 2022-09-27 | 3.63 | 4.77 | 3.84 | 3.8 | 0.004 | 0.68 | 0.0 | 0.04 | 15.52 | 0.00 | 2.084 | 13.38 | 0.01 | 2.8 | 97.1 | 0.1 | 0.72 | 0.88 | 0.78 | 1.41 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 65678 | 8025 | 14 | 127 | 0 | 0 | 0 | logfile |
✘ | 7oUG | 13076 | 2024-01-20 | 2021-06-11 | 3.1 | 2.33 | 3.12 | 1.7 | 0.004 | 0.74 | 0.0 | 0.04 | 17.65 | 0.01 | 1.769 | 5.66 | 0.14 | 2.4 | 97.6 | 0.0 | 0.28 | 0.78 | 0.75 | 2.41 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15090 | 1664 | 16 | 80 | 10 | 8 | 0 | logfile |
✘ | 7AGG | 11779 | 2024-01-18 | 2020-09-22 | 3.3 | 3.68 | — | 3.6 | 0.007 | 0.79 | 0.0 | 0.05 | 13.16 | 0.01 | 1.980 | 6.95 | 0.00 | 4.2 | 95.8 | 0.0 | -1.18 | 0.83 | 0.80 | 3.30 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8252 | 1056 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 8AG4 | 15415 | 2024-01-19 | 2022-07-19 | 2.46 | 2.04 | 2.48 | 1.7 | 0.003 | 0.49 | 0.0 | 0.04 | 13.59 | 0.00 | 2.170 | 5.34 | 0.00 | 3.9 | 96.1 | 0.0 | 0.77 | 0.82 | 0.83 | 4.04 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11155 | 1384 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 5Z1W | 6877 | 2024-01-20 | 2017-12-28 | 3.38 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -3.34 | — | — | 4.86 | 3.5 | 0.003 | 0.57 | 0.0 | 0.04 | 13.89 | 0.00 | 2.133 | 6.05 | 2.12 | 2.3 | 97.7 | 0.0 | 1.73 | — | 0.67 | 0.86 | 3.18 | 13824 | 1716 | 8 | 0 | 12 | 0 | 0 | logfile |
✘ | 6Y5V | 10704 | 2024-01-20 | 2020-02-25 | 4.08 | 4.18 | 4.07 | 4.2 | 0.004 | 0.68 | 0.0 | 0.05 | 12.75 | 0.00 | 2.232 | 7.39 | 0.29 | 4.0 | 96.0 | 0.0 | -2.25 | 0.65 | 0.84 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13400 | 1758 | 6 | 0 | 8 | 0 | 0 | logfile |
✘ | 6VFi | 21173 | 2024-01-18 | 2020-01-05 | 4.54 | 4.63 | 4.96 | 4.5 | 0.018 | 1.47 | 0.0 | 0.09 | 10.93 | 0.01 | 2.449 | 0.53 | 0.00 | 1.3 | 98.7 | 0.0 | 1.21 | 0.80 | 0.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 58488 | 7560 | 48 | 0 | 0 | 0 | 0 | logfile |
✘ | 7FDi | 31544 | 2024-01-17 | 2021-07-16 | 3.12 | 3.24 | — | 3.2 | 0.005 | 0.64 | 0.0 | 0.05 | 15.54 | 0.00 | 2.109 | 15.52 | 0.15 | 3.7 | 96.3 | 0.0 | -0.19 | 0.61 | 0.78 | 3.28 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6403 | 788 | 4 | 0 | 5 | 0 | 0 | logfile |
✘ | 7SVA | 25446 | 2024-01-17 | 2021-11-18 | 3.26 | 3.94 | 3.27 | 3.3 | 0.003 | 0.60 | 0.0 | 0.04 | 15.61 | 0.01 | 2.078 | 8.79 | 0.29 | 5.6 | 94.4 | 0.0 | -0.44 | 0.79 | 0.72 | 3.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6515 | 792 | 3 | 11 | 1 | 0 | 0 | logfile |
✘ | 6CNN | 7538 | 2024-01-20 | 2018-03-08 | 3.5 | 3.63 | — | 3.6 | 0.008 | 1.07 | 0.0 | 0.05 | 12.90 | 0.01 | 2.016 | 1.24 | 0.00 | 4.0 | 96.0 | 0.0 | -4.29 | 0.66 | 0.83 | 2.52 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15740 | 2024 | 16 | 0 | 28 | 0 | 0 | logfile |
✘ | 7RWC | 24714 | 2024-01-19 | 2021-08-19 | 3.8 | 4.08 | 3.75 | 4.0 | 0.004 | 0.60 | 0.0 | 0.04 | 12.87 | 0.00 | 2.175 | 8.83 | 0.09 | 5.6 | 94.4 | 0.1 | 0.33 | 0.71 | 0.72 | 1.25 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12110 | 1705 | 5 | 0 | 8 | 0 | 0 | logfile |
✘ | 7T6X | 25730 | 2024-01-18 | 2021-12-14 | 3.83 | 4.14 | 3.83 | 4.0 | 0.022 | 1.97 | 0.0 | 0.13 | 16.17 | 0.02 | 1.505 | 3.89 | 0.00 | 3.8 | 96.1 | 0.1 | -0.16 | 0.77 | 0.82 | 2.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9217 | 1140 | 19 | 0 | 37 | 0 | 0 | logfile |
✘ | 7XW5 | 33491 | 2024-01-19 | 2022-05-26 | 2.96 | 3.19 | 2.99 | 3.2 | 0.014 | 1.88 | 8.0 | 0.10 | 12.54 | 0.02 | 2.119 | 2.60 | 0.53 | 4.6 | 95.4 | 0.0 | -0.98 | 0.61 | 0.73 | 3.28 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12618 | 1522 | 10 | 0 | 27 | 0 | 0 | logfile |
✘ | 7UL4 | 26591 | 2024-01-17 | 2022-04-03 | 2.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 2524 | 351 | 3 | 0 | 1 | 4 | 0 | logfile |