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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6Y5V | 10704 | 2024-01-20 | 2020-02-25 | 4.08 | 4.18 | 4.07 | 4.2 | 0.004 | 0.68 | 0.0 | 0.05 | 12.75 | 0.00 | 2.232 | 7.39 | 0.29 | 4.0 | 96.0 | 0.0 | -2.25 | 0.65 | 0.84 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13400 | 1758 | 6 | 0 | 8 | 0 | 0 | logfile |
✘ | 6VFi | 21173 | 2024-01-18 | 2020-01-05 | 4.54 | 4.63 | 4.96 | 4.5 | 0.018 | 1.47 | 0.0 | 0.09 | 10.93 | 0.01 | 2.449 | 0.53 | 0.00 | 1.3 | 98.7 | 0.0 | 1.21 | 0.80 | 0.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 58488 | 7560 | 48 | 0 | 0 | 0 | 0 | logfile |
✘ | 7FDi | 31544 | 2024-01-17 | 2021-07-16 | 3.12 | 3.24 | — | 3.2 | 0.005 | 0.64 | 0.0 | 0.05 | 15.54 | 0.00 | 2.109 | 15.52 | 0.15 | 3.7 | 96.3 | 0.0 | -0.19 | 0.61 | 0.78 | 3.28 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6403 | 788 | 4 | 0 | 5 | 0 | 0 | logfile |
✘ | 7SVA | 25446 | 2024-01-17 | 2021-11-18 | 3.26 | 3.94 | 3.27 | 3.3 | 0.003 | 0.60 | 0.0 | 0.04 | 15.61 | 0.01 | 2.078 | 8.79 | 0.29 | 5.6 | 94.4 | 0.0 | -0.44 | 0.79 | 0.72 | 3.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6515 | 792 | 3 | 11 | 1 | 0 | 0 | logfile |
✘ | 6CNN | 7538 | 2024-01-20 | 2018-03-08 | 3.5 | 3.63 | — | 3.6 | 0.008 | 1.07 | 0.0 | 0.05 | 12.90 | 0.01 | 2.016 | 1.24 | 0.00 | 4.0 | 96.0 | 0.0 | -4.29 | 0.66 | 0.83 | 2.52 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15740 | 2024 | 16 | 0 | 28 | 0 | 0 | logfile |
✘ | 7RWC | 24714 | 2024-01-19 | 2021-08-19 | 3.8 | 4.08 | 3.75 | 4.0 | 0.004 | 0.60 | 0.0 | 0.04 | 12.87 | 0.00 | 2.175 | 8.83 | 0.09 | 5.6 | 94.4 | 0.1 | 0.33 | 0.71 | 0.72 | 1.25 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12110 | 1705 | 5 | 0 | 8 | 0 | 0 | logfile |
✘ | 7T6X | 25730 | 2024-01-18 | 2021-12-14 | 3.83 | 4.14 | 3.83 | 4.0 | 0.022 | 1.97 | 0.0 | 0.13 | 16.17 | 0.02 | 1.505 | 3.89 | 0.00 | 3.8 | 96.1 | 0.1 | -0.16 | 0.77 | 0.82 | 2.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9217 | 1140 | 19 | 0 | 37 | 0 | 0 | logfile |
✘ | 7XW5 | 33491 | 2024-01-19 | 2022-05-26 | 2.96 | 3.19 | 2.99 | 3.2 | 0.014 | 1.88 | 8.0 | 0.10 | 12.54 | 0.02 | 2.119 | 2.60 | 0.53 | 4.6 | 95.4 | 0.0 | -0.98 | 0.61 | 0.73 | 3.28 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12618 | 1522 | 10 | 0 | 27 | 0 | 0 | logfile |
✘ | 6PZT | 20537 | 2024-01-17 | 2019-08-01 | 3.46 | 3.91 | 3.76 | 3.8 | 0.007 | 0.75 | 0.0 | 0.05 | 11.59 | 0.00 | 2.120 | 16.50 | 0.43 | 12.3 | 87.7 | 0.0 | -3.13 | 0.59 | 0.76 | 3.32 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6062 | 932 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 8FHQ | 29099 | 2024-01-18 | 2022-12-14 | 2.81 | 3.05 | 2.83 | 3.1 | 0.008 | 0.82 | 0.0 | 0.05 | 13.69 | 0.01 | 2.303 | 4.02 | 0.65 | 3.5 | 96.5 | 0.0 | -1.14 | 0.62 | 0.86 | 3.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7306 | 950 | 4 | 0 | 4 | 0 | 0 | logfile |
✘ | 7oWG | 13097 | 2024-01-19 | 2021-06-18 | 4.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 114114 | 7078 | 8 | 0 | 110 | 0 | 57040 | logfile |
✘ | 8Hii | 34817 | 2024-01-18 | 2022-11-20 | 3.57 | 2.49 | 3.54 | 3.0 | 0.004 | 0.80 | 0.0 | 0.05 | 9.45 | 0.01 | 2.260 | 3.48 | 0.00 | 5.4 | 94.6 | 0.0 | -3.43 | 0.72 | 0.70 | 2.19 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8212 | 1055 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 8HiJ | 34818 | 2024-01-18 | 2022-11-20 | 3.54 | 2.56 | 3.51 | 3.0 | 0.004 | 0.72 | 1.0 | 0.05 | 9.92 | 0.01 | 2.315 | 3.83 | 0.00 | 5.2 | 94.8 | 0.0 | -3.81 | 0.69 | 0.69 | 2.24 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8245 | 1055 | 5 | 0 | 1 | 0 | 0 | logfile |
✘ | 5oJQ | 3566 | 2024-01-18 | 2017-07-22 | 3.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -5.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 113346 | 14364 | 54 | 0 | 0 | 0 | 0 | logfile |
✘ | 7W0M | 32244 | 2024-01-19 | 2021-11-18 | 3.71 | 2.51 | 3.74 | 2.2 | 0.004 | 0.76 | 0.0 | 0.05 | 14.11 | 0.00 | 2.230 | 11.46 | 0.00 | 5.6 | 94.4 | 0.0 | -1.90 | 0.73 | 0.74 | 2.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8929 | 1134 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 7Y5T | 33624 | 2024-01-19 | 2022-06-17 | 2.9 | 2.28 | 2.95 | 3.0 | 0.007 | 1.02 | 0.0 | 0.19 | 14.01 | 0.01 | 2.265 | 3.95 | 0.18 | 5.1 | 94.9 | 0.0 | -3.37 | 0.64 | 0.84 | 4.18 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10844 | 1314 | 13 | 0 | 27 | 0 | 0 | logfile |
✘ | 7YNB | 33957 | 2024-01-20 | 2022-07-30 | 3.46 | 3.65 | 3.47 | 3.6 | 0.005 | 0.72 | 0.0 | 0.05 | 17.97 | 0.01 | 2.127 | 7.12 | 1.26 | 11.0 | 88.8 | 0.2 | -4.52 | 0.83 | 0.87 | 2.37 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13847 | 1536 | 3 | 66 | 0 | 0 | 0 | logfile |
✘ | 7FBS | 31519 | 2024-01-18 | 2021-07-12 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9274 | 1118 | 1 | 0 | 17 | 0 | 0 | logfile |
✘ | 7XVF | 33485 | 2024-01-20 | 2022-05-22 | 2.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13625 | 1554 | 8 | 0 | 42 | 0 | 0 | logfile |
✘ | 8GRX | 34216 | 2024-01-18 | 2022-09-02 | 3.0 | 3.20 | 2.99 | 3.2 | 0.007 | 1.26 | 0.0 | 0.05 | 12.30 | 0.00 | 2.373 | 6.41 | 0.22 | 3.5 | 96.2 | 0.4 | -0.43 | 0.72 | 0.81 | 3.45 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8328 | 1056 | 4 | 0 | 0 | 0 | 0 | logfile |