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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7V00 | 26924 | 2023-05-08 | 2022-05-09 | 3.87 | 4.80 | 3.89 | 3.9 | 0.006 | 0.86 | 0.0 | 0.05 | 13.67 | 0.00 | 1.987 | 15.28 | 0.32 | 4.7 | 95.3 | 0.0 | -1.00 | 0.85 | 0.72 | 1.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20420 | 2430 | 12 | 30 | 2 | 0 | 0 | logfile |
✘ | 7FJJ | 31622 | 2023-05-16 | 2021-08-04 | 3.6 | 3.87 | — | 3.4 | 0.012 | 1.65 | 80.0 | 0.13 | 16.39 | 0.01 | 1.789 | 17.52 | 9.73 | 5.1 | 94.3 | 0.5 | -0.42 | 0.81 | 0.72 | 1.44 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 39474 | 4847 | 26 | 48 | 9 | 0 | 0 | logfile |
✘ | 7oF0 | 12865 | 2023-05-16 | 2021-05-04 | 2.2 | 3.01 | 2.23 | 2.8 | 0.005 | 0.59 | 0.0 | 0.04 | 14.90 | 0.00 | 1.851 | 7.32 | 0.08 | 2.7 | 97.3 | 0.0 | 1.19 | 0.86 | 0.87 | 3.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 99476 | 8446 | 62 | 1432 | 64 | 0 | 0 | logfile |
✘ | 7VFV | 31960 | 2023-05-08 | 2021-09-13 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19776 | 2383 | 8 | 0 | 40 | 0 | 0 | logfile |
✘ | 8DLY | 27520 | 2023-05-02 | 2022-07-08 | 3.0 | 3.63 | 2.92 | 3.6 | 0.005 | 0.94 | 0.0 | 0.06 | 12.37 | 0.01 | 2.317 | 1.86 | 0.37 | 3.5 | 96.5 | 0.0 | -1.46 | 0.63 | 0.81 | 3.36 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 2483 | 314 | 3 | 0 | 1 | 0 | 0 | logfile |
✘ | 7WEB | 32445 | 2023-05-12 | 2021-12-23 | 3.7 | 3.99 | — | 3.7 | 0.004 | 0.65 | 1.0 | 0.05 | 13.84 | 0.00 | 2.109 | 11.89 | 0.15 | 5.7 | 94.2 | 0.1 | -1.30 | 0.84 | 0.82 | 1.60 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30413 | 3754 | 30 | 0 | 74 | 0 | 0 | logfile |
✘ | 8E70 | 27932 | 2023-05-09 | 2022-08-23 | 4.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21097 | 2502 | 13 | 61 | 18 | 0 | 63 | logfile |
✘ | 6VQ9 | 21345 | 2023-05-15 | 2020-02-04 | 3.6 | 3.93 | — | 3.8 | 0.010 | 0.90 | 0.0 | 0.06 | 11.23 | 0.00 | 1.809 | 1.10 | 0.10 | 2.7 | 97.1 | 0.2 | 0.25 | 0.65 | 0.71 | 2.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36114 | 4578 | 17 | 0 | 2 | 0 | 0 | logfile |
✘ | 7S6C | 24868 | 2023-05-05 | 2021-09-13 | 3.1 | 3.69 | — | 3.3 | 0.005 | 0.74 | 0.0 | 0.04 | 14.16 | 0.01 | 2.068 | 4.24 | 0.00 | 4.0 | 96.0 | 0.0 | -0.30 | 0.82 | 0.76 | 2.85 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 47369 | 3190 | 10 | 0 | 2 | 0 | 23420 | logfile |
✘ | 6WNQ | 21854 | 2023-05-15 | 2020-04-23 | 3.4 | 3.73 | — | 3.5 | 0.012 | 1.16 | 2.0 | 0.06 | 14.48 | 0.01 | 1.781 | 3.91 | 2.16 | 3.0 | 97.0 | 0.0 | -1.62 | 0.76 | 0.85 | 2.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37024 | 4857 | 28 | 0 | 12 | 0 | 0 | logfile |
✘ | 6VQG | 21349 | 2023-05-09 | 2020-02-05 | 4.2 | 4.51 | — | 4.3 | 0.008 | 0.98 | 0.0 | 0.07 | 11.37 | 0.00 | 2.219 | 5.30 | 1.36 | 2.6 | 97.2 | 0.3 | 0.61 | 0.64 | 0.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20946 | 2813 | 18 | 0 | 0 | 0 | 0 | logfile |
✘ | 8E6W | 27928 | 2023-05-09 | 2022-08-23 | 4.27 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21145 | 2502 | 13 | 58 | 18 | 0 | 53 | logfile |
✘ | 8DBU | 27307 | 2023-05-15 | 2022-06-14 | 3.4 | 3.79 | 3.34 | 3.4 | 0.004 | 0.83 | 3.0 | 0.05 | 14.18 | 0.01 | 1.900 | 2.64 | 0.76 | 1.6 | 98.4 | 0.0 | -0.05 | 0.77 | 0.84 | 2.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | 0.80 | — | — | — | 2.11 | 36917 | 4845 | 28 | 0 | 11 | 0 | 0 | logfile |
✘ | 7EWP | 31360 | 2023-05-11 | 2021-05-25 | 4.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20179 | 1816 | 4 | 0 | 0 | 0 | 6804 | logfile |
✘ | 7K1J | 22624 | 2023-05-15 | 2020-09-07 | 3.9 | 3.96 | — | 3.9 | 0.010 | 1.24 | 0.0 | 0.07 | 17.63 | 0.01 | 2.066 | 7.83 | 1.09 | 14.5 | 85.0 | 0.5 | -5.24 | 0.68 | 0.71 | 1.17 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 38040 | 4600 | 7 | 74 | 0 | 0 | 0 | logfile |
✘ | 8DLW | 27518 | 2023-05-12 | 2022-07-08 | 2.16 | 3.12 | 2.26 | 2.6 | 0.007 | 1.05 | 0.0 | 0.06 | 11.12 | 0.01 | 2.290 | 1.95 | 0.19 | 2.3 | 97.7 | 0.1 | 0.82 | 0.87 | 0.86 | 4.36 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30267 | 3768 | 33 | 0 | 78 | 0 | 0 | logfile |
✘ | 6oQT | 20169 | 2023-05-15 | 2019-04-29 | 3.1 | 3.48 | — | 3.3 | 0.008 | 0.86 | 1.0 | 0.05 | 14.36 | 0.00 | 1.781 | 3.86 | 1.96 | 2.9 | 97.1 | 0.0 | -2.11 | 0.78 | 0.88 | 3.44 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36971 | 4851 | 28 | 0 | 12 | 0 | 0 | logfile |
✘ | 6oQW | 20172 | 2023-05-15 | 2019-04-29 | 3.1 | 3.49 | — | 3.3 | 0.005 | 0.82 | 5.0 | 0.05 | 14.42 | 0.00 | 1.924 | 4.66 | 1.75 | 3.3 | 96.6 | 0.1 | -2.30 | 0.77 | 0.83 | 2.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36901 | 4847 | 28 | 0 | 12 | 0 | 0 | logfile |
✘ | 6oQV | 20171 | 2023-05-15 | 2019-04-29 | 3.3 | 3.60 | — | 3.4 | 0.010 | 0.94 | 1.0 | 0.05 | 14.75 | 0.00 | 1.740 | 5.27 | 2.95 | 4.1 | 95.9 | 0.0 | -2.77 | 0.76 | 0.85 | 3.07 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36971 | 4851 | 28 | 0 | 12 | 0 | 0 | logfile |
✘ | 7K0Y | 22618 | 2023-05-16 | 2020-09-06 | 3.7 | 3.80 | — | 3.7 | 0.009 | 1.18 | 2.0 | 0.06 | 17.54 | 0.01 | 1.890 | 6.94 | 1.27 | 14.9 | 84.6 | 0.5 | -5.42 | 0.74 | 0.76 | 1.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 39835 | 4814 | 7 | 74 | 0 | 0 | 0 | logfile |