Table showing results for May 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7LUM	23522	2023-05-05	2021-02-22	4.5	4.68	—	4.6	0.007	0.85	0.0	0.05	14.02	0.00	1.970	26.15	0.00	7.5	92.3	0.2	-0.70	0.79	0.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	63978	8374	16	0	0	0	0	logfile
✘	8DJM	27461	2023-05-03	2022-07-01	3.23	3.66	3.31	3.6	0.029	1.53	2.0	1.04	15.98	0.00	1.844	8.23	0.82	3.7	96.3	0.0	-2.26	0.49	0.75	3.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7032	862	7	0	8	0	0	logfile
✘	7oF0	12865	2023-05-16	2021-05-04	2.2	3.01	2.23	2.8	0.005	0.59	0.0	0.04	14.90	0.00	1.851	7.32	0.08	2.7	97.3	0.0	1.19	0.86	0.87	3.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	99476	8446	62	1432	64	0	0	logfile
✘	8CXN	27061	2023-05-04	2022-05-22	2.9	3.69	2.99	3.3	0.002	0.50	3.0	0.05	11.36	0.00	1.974	5.44	0.06	3.5	96.4	0.1	0.27	0.78	0.71	1.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	57131	3678	9	0	30	0	27987	logfile
✘	7MBP	23740	2023-05-13	2021-04-01	2.8	3.41	—	3.1	0.003	0.56	0.0	0.04	12.29	0.00	2.028	7.59	0.30	2.7	97.2	0.1	1.88	0.72	0.83	3.33	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30708	3984	8	0	12	0	0	logfile
✘	8F1K	28791	2023-05-13	2022-11-05	2.8	3.72	2.83	3.2	0.002	0.47	0.0	0.04	14.90	0.00	2.130	4.40	1.30	2.3	97.7	0.0	0.58	0.88	0.82	2.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30854	3689	14	95	3	10	0	logfile
✘	7WEB	32445	2023-05-12	2021-12-23	3.7	3.99	—	3.7	0.004	0.65	1.0	0.05	13.84	0.00	2.109	11.89	0.15	5.7	94.2	0.1	-1.30	0.84	0.82	1.60	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30413	3754	30	0	74	0	0	logfile
✘	6VQ9	21345	2023-05-15	2020-02-04	3.6	3.93	—	3.8	0.010	0.90	0.0	0.06	11.23	0.00	1.809	1.10	0.10	2.7	97.1	0.2	0.25	0.65	0.71	2.13	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	36114	4578	17	0	2	0	0	logfile
✘	6oQT	20169	2023-05-15	2019-04-29	3.1	3.48	—	3.3	0.008	0.86	1.0	0.05	14.36	0.00	1.781	3.86	1.96	2.9	97.1	0.0	-2.11	0.78	0.88	3.44	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	36971	4851	28	0	12	0	0	logfile
✘	6oQW	20172	2023-05-15	2019-04-29	3.1	3.49	—	3.3	0.005	0.82	5.0	0.05	14.42	0.00	1.924	4.66	1.75	3.3	96.6	0.1	-2.30	0.77	0.83	2.57	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	36901	4847	28	0	12	0	0	logfile
✘	6SNH	10257	2023-05-04	2019-08-24	3.9	4.16	—	3.9	0.008	1.24	1.0	0.06	14.34	0.00	2.181	19.70	1.49	11.0	88.9	0.1	-4.30	0.65	0.71	2.25	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7315	918	4	0	1	1	0	logfile
✘	7ZJE	14746	2023-05-08	2022-04-10	3.12	3.70	3.28	3.6	0.002	0.57	0.0	0.04	11.99	0.00	2.254	7.29	0.19	8.3	91.1	0.5	0.64	0.66	0.80	1.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19284	2380	4	0	0	0	0	logfile
✘	8DK2	27481	2023-05-10	2022-07-01	4.1	4.81	4.17	4.1	0.002	0.47	0.0	0.04	13.54	0.00	1.988	7.72	2.88	3.7	96.3	0.0	2.05	0.84	0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23727	2840	12	52	4	0	0	logfile
✘	7XU5	33459	2023-05-17	2022-05-18	3.1	3.44	2.94	3.2	0.008	0.76	0.0	0.05	13.78	0.00	2.104	2.92	0.00	3.9	96.1	0.0	-1.17	0.84	0.82	2.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	44292	2814	12	0	45	0	21549	logfile
✘	6SiH	10210	2023-05-15	2019-08-09	4.7	5.01	—	4.7	0.005	0.54	0.0	0.03	12.61	0.00	1.931	8.52	0.00	5.9	94.1	0.0	-1.62	0.89	0.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	37310	4880	10	0	0	0	0	logfile
✘	6X1A	21994	2023-05-05	2020-05-18	2.5	1.99	2.50	2.6	0.006	0.93	0.0	0.07	15.41	0.00	2.140	14.37	3.79	3.9	96.1	0.0	-3.15	0.51	0.71	2.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10140	1262	5	0	1	23	0	logfile
✘	7WEA	32444	2023-05-12	2021-12-23	3.3	3.61	—	3.5	0.004	0.78	0.0	0.05	14.03	0.00	2.111	10.04	0.03	5.8	94.1	0.1	-2.05	0.80	0.81	2.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30413	3754	30	0	74	0	0	logfile
✘	7WSF	32756	2023-05-06	2022-01-29	2.87	3.08	—	3.1	0.003	0.44	0.0	0.04	11.23	0.00	2.016	6.14	3.87	2.7	97.3	0.0	-0.12	0.72	0.81	4.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7170	879	3	0	1	0	0	logfile
✘	6VQB	21347	2023-05-15	2020-02-04	3.6	3.97	—	3.9	0.010	0.89	0.0	0.06	10.80	0.00	2.221	1.58	0.05	2.6	97.2	0.2	0.25	0.69	0.75	1.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	36113	4578	17	0	1	0	0	logfile
✘	6oQS	20168	2023-05-15	2019-04-29	3.3	3.55	—	3.4	0.008	0.85	0.0	0.05	14.37	0.00	1.849	5.69	1.80	2.5	97.5	0.0	-2.20	0.76	0.86	3.40	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	36971	4851	28	0	12	0	0	logfile

• ← previous
• Page 2 of 55
• next →