Table showing results for May 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7K5Y	22684	2023-05-08	2020-09-17	2.76	3.18	—	3.1	0.004	0.65	0.0	0.04	27.13	0.00	2.108	7.00	0.00	1.4	98.6	0.0	1.74	0.77	0.81	4.49	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18258	1297	13	394	0	0	0	logfile
✘	8EoS	28466	2023-05-10	2022-10-04	3.1	3.84	3.11	3.5	0.005	0.57	0.0	0.04	14.88	0.00	1.840	20.11	3.59	5.2	94.7	0.2	-0.81	0.90	0.89	2.61	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25606	3069	11	87	5	0	0	logfile
✘	6XWR	10636	2023-05-04	2020-01-24	3.22	3.96	—	3.7	0.008	0.75	0.0	0.05	12.81	0.00	2.122	11.13	0.00	5.7	94.3	0.0	-2.71	0.74	0.85	2.44	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9564	1278	3	0	0	0	0	logfile
✘	8DAR	27273	2023-05-12	2022-06-14	3.0	3.42	3.13	3.3	0.004	0.60	0.0	0.04	11.66	0.00	2.011	6.25	1.93	4.7	95.3	0.0	1.67	0.81	0.83	2.41	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30157	3827	15	0	14	0	0	logfile
✘	5VLZ	8709	2023-05-16	2017-04-26	4.4	4.55	—	4.4	0.006	0.89	0.0	0.00	5.88	0.00	2.272	2.04	0.00	6.1	93.9	0.0	-1.92	0.80	0.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	96897	24179	181	0	0	0	0	logfile
✘	7X93	33065	2023-05-05	2022-03-15	3.3	4.15	3.28	3.9	0.003	0.54	0.0	0.07	13.01	0.00	1.890	6.39	0.00	5.6	94.3	0.1	-0.89	0.81	0.82	2.89	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12742	828	8	0	8	0	6162	logfile
✘	7MDi	23773	2023-05-13	2021-04-05	4.3	4.42	—	4.3	0.006	0.75	0.0	0.04	13.13	0.00	2.089	11.76	0.17	10.8	89.2	0.1	-4.24	0.78	0.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30608	4348	20	0	24	24	0	logfile
✘	7V7N	31775	2023-05-10	2021-08-21	2.9	3.77	—	3.2	0.005	0.62	0.0	0.05	13.70	0.00	2.171	6.62	0.00	5.4	94.4	0.1	0.11	0.89	0.87	2.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25430	3101	42	0	85	0	0	logfile
✘	7V69	31739	2023-05-04	2021-08-20	3.4	2.24	—	2.0	0.003	0.65	0.0	0.04	12.64	0.00	2.096	13.28	0.00	2.9	97.1	0.0	-2.02	0.68	0.64	2.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8539	1122	5	0	0	0	0	logfile
✘	7Fii	31598	2023-05-04	2021-07-31	4.3	4.37	—	4.1	0.002	0.36	0.0	0.04	8.97	0.00	2.073	1.66	0.00	0.9	99.1	0.0	3.08	0.64	0.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8765	1522	6	0	0	0	0	logfile
✘	7R8B	24314	2023-05-05	2021-06-26	3.1	3.48	—	3.3	0.002	0.55	0.0	0.04	13.48	0.00	2.103	6.66	1.94	3.5	96.5	0.0	-1.73	0.67	0.85	2.57	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10868	1371	6	0	2	0	0	logfile
✘	7YPQ	34011	2023-05-02	2022-08-04	3.1	3.22	2.15	3.2	0.005	0.63	0.0	0.05	17.29	0.00	2.261	7.93	0.00	2.2	97.8	0.0	-0.66	0.52	0.79	2.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2915	327	2	11	0	0	0	logfile
✘	7WGV	32490	2023-05-11	2021-12-29	3.2	3.63	—	3.6	0.017	1.29	0.0	0.05	14.17	0.00	2.151	5.03	0.00	3.2	96.8	0.0	-0.59	0.79	0.83	3.26	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	26931	3309	21	0	69	0	0	logfile
✘	8DCX	27330	2023-05-04	2022-06-17	2.8	3.32	3.33	3.4	0.003	0.58	0.0	0.04	14.71	0.00	2.195	13.47	0.00	5.4	94.6	0.1	-0.04	0.48	0.60	0.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9627	1166	2	0	0	0	0	logfile
✘	7Y7W	33672	2023-05-03	2022-06-22	2.4	2.70	2.46	2.7	0.006	0.78	0.0	0.08	17.46	0.00	1.907	5.88	1.11	3.0	97.0	0.0	0.06	0.68	0.85	4.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4310	529	1	0	7	48	0	logfile
✘	8CVP	27012	2023-05-04	2022-05-18	3.4	3.75	3.50	3.7	0.003	0.58	0.0	0.04	13.05	0.00	2.231	4.87	0.12	6.1	93.8	0.1	-1.69	0.69	0.74	3.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10112	1484	2	0	1	0	0	logfile
✘	7oE7	12861	2023-05-05	2021-05-01	3.73	3.95	3.97	3.7	0.002	0.53	0.0	0.04	14.33	0.00	2.084	3.86	0.00	6.8	93.2	0.0	-1.48	0.79	0.64	0.91	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11116	1382	1	0	2	0	0	logfile
✘	7VXF	32178	2023-05-12	2021-11-12	3.6	4.01	—	3.8	0.002	0.48	0.0	0.04	8.03	0.00	1.780	7.55	0.03	4.0	95.9	0.1	-2.43	0.47	0.48	0.65	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30079	3814	4	0	0	0	0	logfile
✘	7V00	26924	2023-05-08	2022-05-09	3.87	4.80	3.89	3.9	0.006	0.86	0.0	0.05	13.67	0.00	1.987	15.28	0.32	4.7	95.3	0.0	-1.00	0.85	0.72	1.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20420	2430	12	30	2	0	0	logfile
✘	7D59	30578	2023-05-16	2020-09-25	3.1	3.84	—	3.5	0.002	0.61	0.0	0.54	14.30	0.00	2.196	7.56	0.00	4.5	95.4	0.1	-3.52	0.85	0.79	0.90	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	39898	5010	23	0	8	0	0	logfile

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