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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7K5Y | 22684 | 2023-05-08 | 2020-09-17 | 2.76 | 3.18 | — | 3.1 | 0.004 | 0.65 | 0.0 | 0.04 | 27.13 | 0.00 | 2.108 | 7.00 | 0.00 | 1.4 | 98.6 | 0.0 | 1.74 | 0.77 | 0.81 | 4.49 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18258 | 1297 | 13 | 394 | 0 | 0 | 0 | logfile |
✘ | 8EoS | 28466 | 2023-05-10 | 2022-10-04 | 3.1 | 3.84 | 3.11 | 3.5 | 0.005 | 0.57 | 0.0 | 0.04 | 14.88 | 0.00 | 1.840 | 20.11 | 3.59 | 5.2 | 94.7 | 0.2 | -0.81 | 0.90 | 0.89 | 2.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25606 | 3069 | 11 | 87 | 5 | 0 | 0 | logfile |
✘ | 6XWR | 10636 | 2023-05-04 | 2020-01-24 | 3.22 | 3.96 | — | 3.7 | 0.008 | 0.75 | 0.0 | 0.05 | 12.81 | 0.00 | 2.122 | 11.13 | 0.00 | 5.7 | 94.3 | 0.0 | -2.71 | 0.74 | 0.85 | 2.44 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9564 | 1278 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 8DAR | 27273 | 2023-05-12 | 2022-06-14 | 3.0 | 3.42 | 3.13 | 3.3 | 0.004 | 0.60 | 0.0 | 0.04 | 11.66 | 0.00 | 2.011 | 6.25 | 1.93 | 4.7 | 95.3 | 0.0 | 1.67 | 0.81 | 0.83 | 2.41 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30157 | 3827 | 15 | 0 | 14 | 0 | 0 | logfile |
✘ | 5VLZ | 8709 | 2023-05-16 | 2017-04-26 | 4.4 | 4.55 | — | 4.4 | 0.006 | 0.89 | 0.0 | 0.00 | 5.88 | 0.00 | 2.272 | 2.04 | 0.00 | 6.1 | 93.9 | 0.0 | -1.92 | 0.80 | 0.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 96897 | 24179 | 181 | 0 | 0 | 0 | 0 | logfile |
✘ | 7X93 | 33065 | 2023-05-05 | 2022-03-15 | 3.3 | 4.15 | 3.28 | 3.9 | 0.003 | 0.54 | 0.0 | 0.07 | 13.01 | 0.00 | 1.890 | 6.39 | 0.00 | 5.6 | 94.3 | 0.1 | -0.89 | 0.81 | 0.82 | 2.89 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12742 | 828 | 8 | 0 | 8 | 0 | 6162 | logfile |
✘ | 7MDi | 23773 | 2023-05-13 | 2021-04-05 | 4.3 | 4.42 | — | 4.3 | 0.006 | 0.75 | 0.0 | 0.04 | 13.13 | 0.00 | 2.089 | 11.76 | 0.17 | 10.8 | 89.2 | 0.1 | -4.24 | 0.78 | 0.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30608 | 4348 | 20 | 0 | 24 | 24 | 0 | logfile |
✘ | 7V7N | 31775 | 2023-05-10 | 2021-08-21 | 2.9 | 3.77 | — | 3.2 | 0.005 | 0.62 | 0.0 | 0.05 | 13.70 | 0.00 | 2.171 | 6.62 | 0.00 | 5.4 | 94.4 | 0.1 | 0.11 | 0.89 | 0.87 | 2.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25430 | 3101 | 42 | 0 | 85 | 0 | 0 | logfile |
✘ | 7V69 | 31739 | 2023-05-04 | 2021-08-20 | 3.4 | 2.24 | — | 2.0 | 0.003 | 0.65 | 0.0 | 0.04 | 12.64 | 0.00 | 2.096 | 13.28 | 0.00 | 2.9 | 97.1 | 0.0 | -2.02 | 0.68 | 0.64 | 2.22 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8539 | 1122 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 7Fii | 31598 | 2023-05-04 | 2021-07-31 | 4.3 | 4.37 | — | 4.1 | 0.002 | 0.36 | 0.0 | 0.04 | 8.97 | 0.00 | 2.073 | 1.66 | 0.00 | 0.9 | 99.1 | 0.0 | 3.08 | 0.64 | 0.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8765 | 1522 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 7R8B | 24314 | 2023-05-05 | 2021-06-26 | 3.1 | 3.48 | — | 3.3 | 0.002 | 0.55 | 0.0 | 0.04 | 13.48 | 0.00 | 2.103 | 6.66 | 1.94 | 3.5 | 96.5 | 0.0 | -1.73 | 0.67 | 0.85 | 2.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10868 | 1371 | 6 | 0 | 2 | 0 | 0 | logfile |
✘ | 7YPQ | 34011 | 2023-05-02 | 2022-08-04 | 3.1 | 3.22 | 2.15 | 3.2 | 0.005 | 0.63 | 0.0 | 0.05 | 17.29 | 0.00 | 2.261 | 7.93 | 0.00 | 2.2 | 97.8 | 0.0 | -0.66 | 0.52 | 0.79 | 2.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 2915 | 327 | 2 | 11 | 0 | 0 | 0 | logfile |
✘ | 7WGV | 32490 | 2023-05-11 | 2021-12-29 | 3.2 | 3.63 | — | 3.6 | 0.017 | 1.29 | 0.0 | 0.05 | 14.17 | 0.00 | 2.151 | 5.03 | 0.00 | 3.2 | 96.8 | 0.0 | -0.59 | 0.79 | 0.83 | 3.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 26931 | 3309 | 21 | 0 | 69 | 0 | 0 | logfile |
✘ | 8DCX | 27330 | 2023-05-04 | 2022-06-17 | 2.8 | 3.32 | 3.33 | 3.4 | 0.003 | 0.58 | 0.0 | 0.04 | 14.71 | 0.00 | 2.195 | 13.47 | 0.00 | 5.4 | 94.6 | 0.1 | -0.04 | 0.48 | 0.60 | 0.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9627 | 1166 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 7Y7W | 33672 | 2023-05-03 | 2022-06-22 | 2.4 | 2.70 | 2.46 | 2.7 | 0.006 | 0.78 | 0.0 | 0.08 | 17.46 | 0.00 | 1.907 | 5.88 | 1.11 | 3.0 | 97.0 | 0.0 | 0.06 | 0.68 | 0.85 | 4.04 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4310 | 529 | 1 | 0 | 7 | 48 | 0 | logfile |
✘ | 8CVP | 27012 | 2023-05-04 | 2022-05-18 | 3.4 | 3.75 | 3.50 | 3.7 | 0.003 | 0.58 | 0.0 | 0.04 | 13.05 | 0.00 | 2.231 | 4.87 | 0.12 | 6.1 | 93.8 | 0.1 | -1.69 | 0.69 | 0.74 | 3.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10112 | 1484 | 2 | 0 | 1 | 0 | 0 | logfile |
✘ | 7oE7 | 12861 | 2023-05-05 | 2021-05-01 | 3.73 | 3.95 | 3.97 | 3.7 | 0.002 | 0.53 | 0.0 | 0.04 | 14.33 | 0.00 | 2.084 | 3.86 | 0.00 | 6.8 | 93.2 | 0.0 | -1.48 | 0.79 | 0.64 | 0.91 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11116 | 1382 | 1 | 0 | 2 | 0 | 0 | logfile |
✘ | 7VXF | 32178 | 2023-05-12 | 2021-11-12 | 3.6 | 4.01 | — | 3.8 | 0.002 | 0.48 | 0.0 | 0.04 | 8.03 | 0.00 | 1.780 | 7.55 | 0.03 | 4.0 | 95.9 | 0.1 | -2.43 | 0.47 | 0.48 | 0.65 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30079 | 3814 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 7V00 | 26924 | 2023-05-08 | 2022-05-09 | 3.87 | 4.80 | 3.89 | 3.9 | 0.006 | 0.86 | 0.0 | 0.05 | 13.67 | 0.00 | 1.987 | 15.28 | 0.32 | 4.7 | 95.3 | 0.0 | -1.00 | 0.85 | 0.72 | 1.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20420 | 2430 | 12 | 30 | 2 | 0 | 0 | logfile |
✘ | 7D59 | 30578 | 2023-05-16 | 2020-09-25 | 3.1 | 3.84 | — | 3.5 | 0.002 | 0.61 | 0.0 | 0.54 | 14.30 | 0.00 | 2.196 | 7.56 | 0.00 | 4.5 | 95.4 | 0.1 | -3.52 | 0.85 | 0.79 | 0.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 39898 | 5010 | 23 | 0 | 8 | 0 | 0 | logfile |