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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7X28 | 32961 | 2023-05-15 | 2022-02-25 | 2.49 | 2.72 | — | 1.8 | 0.013 | 1.52 | 5.0 | 0.11 | 13.24 | 0.00 | 1.606 | 7.72 | 7.98 | 2.7 | 97.0 | 0.2 | 2.21 | 0.57 | 0.40 | 0.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 31583 | 4119 | 7 | 0 | 0 | 0 | 0 | logfile |
✘ | 7PKP | 13476 | 2023-05-08 | 2021-08-26 | 3.1 | 3.25 | — | 3.2 | 0.008 | 0.69 | 0.0 | 0.04 | 14.18 | 0.00 | 2.238 | 15.25 | 0.00 | 8.7 | 91.3 | 0.0 | -4.06 | 0.76 | 0.83 | 2.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20360 | 2504 | 8 | 0 | 0 | 0 | 0 | logfile |
✘ | 7ZR8 | 14886 | 2023-05-03 | 2022-05-03 | 3.7 | 3.81 | 3.43 | 3.8 | 0.003 | 0.46 | 0.0 | 0.04 | 8.45 | 0.00 | 2.181 | 7.02 | 0.74 | 3.9 | 96.1 | 0.0 | -0.94 | 0.72 | 0.82 | 2.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3693 | 471 | 4 | 0 | 1 | 0 | 0 | logfile |
✘ | 7P7M | 13240 | 2023-05-15 | 2021-07-19 | 3.2 | 3.30 | — | 3.0 | 0.005 | 0.87 | 0.0 | 1.47 | 14.33 | 0.01 | 2.214 | 5.31 | 0.39 | 2.4 | 97.6 | 0.0 | -0.55 | 0.91 | 0.87 | 2.27 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37390 | 4720 | 25 | 0 | 26 | 0 | 0 | logfile |
✘ | 6JZo | 9898 | 2023-05-09 | 2019-05-03 | 3.28 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21405 | 2657 | 8 | 0 | 12 | 0 | 0 | logfile |
✘ | 7PKo | 13474 | 2023-05-08 | 2021-08-26 | 3.9 | 4.01 | — | 3.9 | 0.004 | 0.66 | 0.0 | 0.04 | 14.59 | 0.00 | 2.205 | 10.80 | 0.00 | 7.5 | 92.5 | 0.0 | -4.16 | 0.76 | 0.82 | 2.59 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20368 | 2504 | 8 | 0 | 0 | 0 | 0 | logfile |
✘ | 6UXA | 20931 | 2023-05-04 | 2019-11-07 | 4.5 | 5.05 | — | 6.0 | 0.005 | 0.77 | 0.0 | 0.06 | 4.56 | 0.00 | 2.628 | 0.00 | 0.00 | 3.8 | 96.2 | 0.0 | -2.56 | 0.71 | 0.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10344 | 2104 | 8 | 0 | 0 | 0 | 0 | logfile |
✘ | 7L6o | 23124 | 2023-05-13 | 2020-12-23 | 3.9 | 4.18 | 3.92 | 3.9 | 0.016 | 2.00 | 2.0 | 0.12 | 14.17 | 0.02 | 2.534 | 0.23 | 0.70 | 8.2 | 91.1 | 0.7 | -1.91 | 0.83 | 0.80 | 3.20 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29270 | 1776 | 51 | 0 | 132 | 0 | 13598 | logfile |
✘ | 7Z7R | 14535 | 2023-05-15 | 2022-03-16 | 3.36 | 3.64 | — | 3.4 | 0.004 | 0.85 | 0.0 | 1.47 | 16.84 | 0.01 | 2.232 | 6.74 | 0.41 | 2.7 | 97.3 | 0.0 | -0.57 | 0.91 | 0.85 | 2.15 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37252 | 4750 | 21 | 0 | 14 | 0 | 0 | logfile |
✘ | 6QCT | 4512 | 2023-05-07 | 2018-12-30 | 3.2 | 3.59 | — | 3.2 | 0.008 | 0.85 | 0.0 | 0.05 | 14.84 | 0.01 | 2.075 | 4.28 | 5.87 | 5.0 | 95.0 | 0.0 | -3.92 | 0.90 | 0.84 | 3.03 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18266 | 2186 | 8 | 38 | 3 | 0 | 0 | logfile |
✘ | 7WU3 | 32818 | 2023-05-03 | 2022-02-05 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7877 | 1013 | 5 | 0 | 1 | 0 | 0 | logfile |
✘ | 5Z96 | 6901 | 2023-05-09 | 2018-02-02 | 3.28 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21494 | 2665 | 8 | 0 | 13 | 0 | 0 | logfile |
✘ | 8DDX | 27345 | 2023-05-15 | 2022-06-19 | 3.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35500 | 4295 | 14 | 0 | 81 | 0 | 0 | logfile |
✘ | 6Z85 | 11114 | 2023-05-15 | 2020-06-02 | 2.9 | 3.09 | — | 3.1 | 0.009 | 1.05 | 0.0 | 0.06 | 9.34 | 0.01 | 2.301 | 3.75 | 0.49 | 3.1 | 96.9 | 0.0 | -4.47 | 0.62 | 0.69 | 2.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18880 | 2360 | 30 | 0 | 20 | 0 | 0 | logfile |
✘ | 6HUo | 0282 | 2023-05-06 | 2018-10-09 | 3.26 | 3.38 | 3.25 | 3.3 | 0.006 | 0.89 | 0.0 | 0.06 | 8.62 | 0.01 | 2.257 | 4.69 | 0.00 | 3.8 | 96.2 | 0.0 | -4.15 | 0.74 | 0.83 | 4.30 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15227 | 1808 | 16 | 0 | 35 | 0 | 0 | logfile |
✘ | 7YPA | 33997 | 2023-05-11 | 2022-08-03 | 3.05 | 3.16 | 3.05 | 3.1 | 0.003 | 0.59 | 0.0 | 0.04 | 14.85 | 0.01 | 2.191 | 3.02 | 0.08 | 3.1 | 96.9 | 0.0 | -3.59 | 0.76 | 0.81 | 2.49 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 26022 | 3129 | 10 | 86 | 3 | 0 | 0 | logfile |
✘ | 6HiQ | 0227 | 2023-05-07 | 2018-08-30 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16110 | 1925 | 20 | 0 | 30 | 0 | 0 | logfile |
✘ | 6Hio | 0226 | 2023-05-07 | 2018-08-30 | 4.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16085 | 1925 | 20 | 0 | 30 | 0 | 0 | logfile |
✘ | 6R0Y | 4700 | 2023-05-16 | 2019-03-13 | 3.9 | 3.89 | — | 3.9 | 0.009 | 1.08 | 0.0 | 0.06 | 10.27 | 0.01 | 2.169 | 5.26 | 0.31 | 7.3 | 92.7 | 0.0 | -4.22 | 0.84 | 0.84 | 2.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40169 | 5845 | 28 | 0 | 3 | 0 | 0 | logfile |
✘ | 7QEV | 13942 | 2023-05-02 | 2021-12-03 | 2.9 | 3.46 | — | 3.1 | 0.009 | 0.86 | 0.0 | 0.05 | 13.68 | 0.00 | 2.164 | 5.92 | 0.00 | 4.3 | 95.7 | 0.0 | -0.15 | 0.79 | 0.86 | 3.19 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3204 | 383 | 6 | 0 | 8 | 8 | 0 | logfile |