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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8CVi | 27008 | 2024-01-20 | 2022-05-18 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 1.49 | — | — | 1.22 | 3.4 | 0.003 | 0.59 | 0.0 | 0.04 | 16.35 | 0.00 | 2.089 | 10.90 | 1.79 | 4.0 | 96.0 | 0.0 | 3.61 | — | 0.58 | 0.85 | 0.95 | 66030 | 8856 | 33 | 0 | 0 | 0 | 0 | logfile |
✘ | 5Z1W | 6877 | 2024-01-20 | 2017-12-28 | 3.38 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -3.34 | — | — | 4.86 | 3.5 | 0.003 | 0.57 | 0.0 | 0.04 | 13.89 | 0.00 | 2.133 | 6.05 | 2.12 | 2.3 | 97.7 | 0.0 | 1.73 | — | 0.67 | 0.86 | 3.18 | 13824 | 1716 | 8 | 0 | 12 | 0 | 0 | logfile |
✘ | 6o7K | 0643 | 2024-01-18 | 2019-03-08 | 4.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.76 | — | — | — | 4.1 | 0.004 | 0.66 | 0.0 | 0.04 | 21.62 | 0.00 | 2.079 | 19.50 | 0.04 | 8.2 | 91.4 | 0.5 | -1.33 | — | 0.90 | 0.83 | — | 57748 | 2934 | 25 | 1622 | 0 | 0 | 0 | logfile |
✘ | 7EQ9 | 31256 | 2024-01-19 | 2021-04-30 | 3.3 | 3.70 | 3.42 | 3.6 | 0.002 | 0.47 | 0.0 | 0.04 | 15.65 | 0.00 | 2.267 | 3.70 | 0.00 | 3.3 | 96.7 | 0.0 | 1.85 | 0.60 | 0.53 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62520 | 7620 | 60 | 0 | 0 | 0 | 0 | logfile |
✘ | 6VYH | 21460 | 2024-01-17 | 2020-02-26 | 3.0 | 3.13 | — | 3.1 | 0.013 | 1.11 | 1.0 | 0.06 | 14.40 | 0.01 | 1.922 | 11.42 | 2.00 | 8.8 | 90.0 | 1.2 | -4.54 | 0.66 | 0.81 | 2.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6093 | 860 | 5 | 0 | 2 | 1 | 0 | logfile |
✘ | 7XT9 | 33443 | 2024-01-20 | 2022-05-16 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14875 | 927 | 4 | 0 | 7 | 0 | 7351 | logfile |
✘ | 8BX5 | 16308 | 2024-01-19 | 2022-12-07 | 4.2 | 4.41 | 4.00 | 4.3 | 0.003 | 0.78 | 1.0 | 0.06 | 14.22 | 0.01 | 2.218 | 14.11 | 0.63 | 3.9 | 96.1 | 0.0 | -0.69 | 0.60 | 0.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12527 | 1630 | 13 | 0 | 4 | 4 | 0 | logfile |
✘ | 6A69 | 6987 | 2024-01-18 | 2018-06-27 | 4.11 | 4.21 | — | 4.1 | 0.011 | 1.48 | 0.0 | 0.07 | 11.87 | 0.01 | 2.275 | 7.51 | 1.81 | 13.5 | 86.4 | 0.1 | -4.69 | 0.61 | 0.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7851 | 1038 | 2 | 0 | 1 | 0 | 0 | logfile |
✘ | 8DMM | 27544 | 2024-01-18 | 2022-07-08 | 3.47 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9314 | 1152 | 4 | 0 | 4 | 0 | 0 | logfile |
✘ | 6iJZ | 9682 | 2024-01-19 | 2018-10-12 | 3.68 | 3.76 | — | 3.7 | 0.008 | 1.11 | 0.0 | 0.06 | 10.64 | 0.01 | 2.000 | 4.54 | 0.69 | 10.9 | 88.8 | 0.3 | -5.03 | 0.57 | 0.80 | 2.19 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10964 | 1366 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 5GUP | 9539 | 2024-01-18 | 2016-08-30 | 4.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 109982 | 13895 | 107 | 0 | 77 | 0 | 0 | logfile |
✘ | 7F4V | 31455 | 2024-01-20 | 2021-06-21 | 2.04 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 67641 | 6336 | 78 | 0 | 453 | 402 | 0 | logfile |
✘ | 6ZKU | 11262 | 2024-01-19 | 2020-06-30 | 3.0 | 2.73 | — | 2.9 | 0.009 | 1.03 | 0.0 | 1.04 | 12.30 | 0.01 | 2.218 | 4.96 | 0.06 | 4.1 | 95.9 | 0.0 | -2.98 | 0.62 | 0.82 | 3.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 65505 | 7966 | 69 | 0 | 36 | 0 | 0 | logfile |
✘ | 6XWR | 10636 | 2024-01-18 | 2020-01-24 | 3.22 | 3.96 | — | 3.7 | 0.008 | 0.75 | 0.0 | 0.05 | 12.81 | 0.00 | 2.122 | 11.13 | 0.00 | 5.7 | 94.3 | 0.0 | -2.71 | 0.74 | 0.85 | 2.44 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9564 | 1278 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 7oJL | 12955 | 2024-01-19 | 2021-05-16 | 3.3 | 3.67 | 3.30 | 3.4 | 0.003 | 0.46 | 0.0 | 0.04 | 12.89 | 0.00 | 1.827 | 7.40 | 2.98 | 8.2 | 91.8 | 0.1 | -2.78 | 0.86 | 0.82 | 2.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12842 | 1498 | 4 | 33 | 1 | 0 | 0 | logfile |
✘ | 5XTH | 6775 | 2024-01-19 | 2017-06-19 | 3.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 115642 | 14193 | 113 | 0 | 63 | 0 | 0 | logfile |
✘ | 7D5i | 30582 | 2024-01-17 | 2020-09-26 | 2.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6232 | 793 | 3 | 0 | 3 | 0 | 0 | logfile |
✘ | 6S8N | 10125 | 2024-01-18 | 2019-07-10 | 3.1 | 3.26 | — | 3.3 | 0.012 | 1.73 | 0.0 | 0.06 | 16.96 | 0.01 | 1.791 | 6.47 | 0.12 | 8.7 | 91.1 | 0.2 | -6.61 | 0.69 | 0.82 | 1.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7831 | 970 | 8 | 0 | 7 | 0 | 0 | logfile |
✘ | 6ZKT | 11261 | 2024-01-20 | 2020-06-30 | 2.8 | 2.58 | — | 2.8 | 0.008 | 1.00 | 0.0 | 1.03 | 12.20 | 0.01 | 2.200 | 4.93 | 0.07 | 3.9 | 96.1 | 0.0 | -2.94 | 0.57 | 0.81 | 4.03 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 66294 | 8070 | 67 | 0 | 36 | 0 | 0 | logfile |
✘ | 5XTD | 6773 | 2024-01-20 | 2017-06-19 | 3.7 | 3.83 | — | 3.7 | 0.012 | 1.58 | 1.0 | 0.07 | 12.91 | 0.01 | 1.049 | 27.86 | 0.83 | 6.5 | 90.6 | 2.9 | -1.69 | 0.75 | 0.72 | 2.51 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 66789 | 8191 | 62 | 0 | 30 | 0 | 0 | logfile |