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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 5BK4 | 9400 | 2023-05-05 | 2017-09-12 | 3.9 | 4.14 | — | 4.1 | 0.008 | 1.24 | 0.0 | 0.06 | 14.44 | 0.01 | 2.234 | 5.12 | 1.24 | 12.2 | 87.6 | 0.2 | -4.81 | 0.81 | 0.79 | 2.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62482 | 7636 | 22 | 120 | 8 | 0 | 0 | logfile |
✘ | 6RBE | 4794 | 2023-05-10 | 2019-04-10 | 3.8 | 4.03 | 3.73 | 40.0 | 0.007 | 1.27 | 0.0 | 0.06 | 18.44 | 0.01 | 2.076 | 9.10 | 1.35 | 11.9 | 86.8 | 1.2 | -4.17 | 0.25 | 0.02 | 0.00 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72721 | 4512 | 33 | 1750 | 0 | 0 | 0 | logfile |
✘ | 6K7M | 9941 | 2023-05-04 | 2019-06-07 | 2.95 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10591 | 1307 | 5 | 0 | 9 | 0 | 0 | logfile |
✘ | 8E9B | 27962 | 2023-05-16 | 2022-08-26 | 3.5 | 3.16 | 3.52 | 3.4 | 0.004 | 0.71 | 1.0 | 0.05 | 15.36 | 0.01 | 2.023 | 10.91 | 0.24 | 5.2 | 94.7 | 0.1 | 0.07 | 0.74 | 0.77 | 1.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 39160 | 4933 | 25 | 0 | 20 | 0 | 0 | logfile |
✘ | 5WC3 | 8795 | 2023-05-06 | 2017-06-29 | 3.5 | 3.53 | — | 3.5 | 0.015 | 1.18 | 0.0 | 0.06 | 9.37 | 0.01 | 1.925 | 12.86 | 0.00 | 8.0 | 90.5 | 1.5 | -5.20 | 0.79 | 0.76 | 2.30 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 65880 | 4170 | 30 | 0 | 0 | 0 | 33390 | logfile |
✘ | 6PV8 | 20488 | 2023-05-08 | 2019-07-19 | 3.87 | 4.04 | 3.94 | 4.0 | 0.006 | 1.07 | 1.0 | 0.07 | 9.81 | 0.01 | 2.057 | 5.07 | 0.69 | 4.9 | 95.1 | 0.0 | -2.83 | 0.70 | 0.79 | 2.52 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20051 | 2379 | 28 | 0 | 57 | 8 | 0 | logfile |
✘ | 5XNN | 6743 | 2023-05-04 | 2017-05-23 | 3.6 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10020 | 854 | 8 | 0 | 72 | 0 | 0 | logfile |
✘ | 7DGR | 30674 | 2023-05-02 | 2020-11-12 | 4.6 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 107305 | 13811 | 102 | 0 | 37 | 0 | 0 | logfile |
✘ | 7U1Q | 26303 | 2023-05-09 | 2022-02-21 | 3.9 | 4.05 | — | 4.0 | 0.003 | 0.54 | 0.0 | 0.04 | 13.67 | 0.00 | 2.228 | 6.87 | 0.00 | 6.6 | 93.4 | 0.0 | -1.11 | 0.53 | 0.75 | 1.59 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21013 | 2791 | 11 | 0 | 25 | 0 | 0 | logfile |
✘ | 6W1J | 21511 | 2023-05-07 | 2020-03-04 | 2.92 | 3.34 | 2.83 | 3.2 | 0.010 | 1.17 | 0.0 | 0.10 | 10.28 | 0.01 | 2.337 | 2.46 | 0.82 | 5.6 | 94.4 | 0.0 | -5.20 | 0.76 | 0.88 | 4.98 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16861 | 1965 | 25 | 0 | 41 | 0 | 0 | logfile |
✘ | 7DD9 | 30650 | 2023-05-15 | 2020-10-28 | 2.4 | 2.49 | 2.37 | 2.4 | 0.007 | 0.71 | 0.0 | 0.05 | 15.88 | 0.00 | 1.932 | 8.69 | 1.93 | 7.1 | 92.9 | 0.0 | -1.19 | 0.79 | 0.87 | 4.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37149 | 4516 | 12 | 0 | 12 | 949 | 0 | logfile |
✘ | 7SiD | 25141 | 2023-05-17 | 2021-10-13 | 2.53 | 2.17 | — | 2.7 | 0.003 | 0.53 | 0.0 | 0.04 | 14.33 | 0.01 | 2.072 | 4.12 | 0.77 | 1.7 | 98.3 | 0.0 | 2.49 | 0.61 | 0.61 | 1.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 44650 | 5566 | 6 | 0 | 4 | 0 | 0 | logfile |
✘ | 7ATE | 11921 | 2023-05-04 | 2020-10-30 | 2.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9056 | 1098 | 10 | 0 | 9 | 145 | 0 | logfile |
✘ | 6HYD | 0308 | 2023-05-05 | 2018-10-19 | 3.9 | 4.01 | — | 4.0 | 0.004 | 0.85 | 0.0 | 0.05 | 9.33 | 0.01 | 2.319 | 2.63 | 0.24 | 5.7 | 94.0 | 0.3 | -6.69 | 0.74 | 0.77 | 2.59 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12168 | 1543 | 1 | 0 | 31 | 0 | 0 | logfile |
✘ | 7XX2 | 33498 | 2023-05-15 | 2022-05-28 | 3.6 | 3.49 | 3.64 | 3.3 | 0.006 | 0.95 | 4.0 | 0.06 | 13.96 | 0.01 | 2.033 | 16.70 | 1.27 | 9.9 | 90.0 | 0.0 | -1.28 | 0.86 | 0.82 | 1.65 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36436 | 4528 | 11 | 0 | 5 | 0 | 0 | logfile |
✘ | 7NT5 | 12581 | 2023-05-16 | 2021-03-09 | 3.5 | 2.99 | 3.35 | 3.3 | 0.013 | 2.20 | 210.0 | 0.16 | 15.27 | 0.01 | 1.889 | 6.59 | 1.47 | 3.3 | 96.5 | 0.2 | -2.37 | 0.67 | 0.73 | 2.23 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40200 | 5118 | 14 | 78 | 0 | 0 | 0 | logfile |
✘ | 5FJ8 | 3178 | 2023-05-16 | 2015-10-06 | 3.9 | 3.97 | — | 4.0 | 0.004 | 1.21 | 0.0 | 0.04 | 13.54 | 0.00 | 2.035 | 13.90 | 4.05 | 16.0 | 82.9 | 1.1 | -4.73 | 0.70 | 0.69 | 0.95 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 39284 | 4804 | 25 | 47 | 41 | 0 | 0 | logfile |
✘ | 6UZV | 20963 | 2023-05-10 | 2019-11-15 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72606 | 6711 | 60 | 0 | 408 | 0 | 0 | logfile |
✘ | 6PTJ | 20471 | 2023-05-14 | 2019-07-15 | 3.8 | 4.13 | — | 4.0 | 0.008 | 1.12 | 1.0 | 0.06 | 14.87 | 0.01 | 2.011 | 6.46 | 0.39 | 10.6 | 89.2 | 0.2 | -5.32 | 0.86 | 0.82 | 1.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 34361 | 4280 | 14 | 0 | 0 | 0 | 0 | logfile |
✘ | 7S8B | 24892 | 2023-05-09 | 2021-09-17 | 2.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21124 | 2448 | 8 | 0 | 46 | 0 | 0 | logfile |