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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7PiJ | 13438 | 2023-03-12 | 2021-08-20 | 3.78 | 4.14 | — | 4.1 | 0.015 | 1.17 | 0.0 | 0.05 | 13.54 | 0.01 | 1.166 | 13.45 | 0.11 | 10.6 | 89.3 | 0.1 | -3.26 | 0.50 | 0.53 | 1.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8194 | 1068 | 8 | 0 | 0 | 16 | 0 | logfile |
✘ | 8EUi | 24423 | 2023-03-17 | 2022-10-18 | 3.1 | 3.13 | — | 3.1 | 0.004 | 0.52 | 0.0 | 0.03 | 15.20 | 0.00 | 2.143 | 7.87 | 0.18 | 3.8 | 96.2 | 0.1 | -0.02 | 0.82 | 0.81 | 3.11 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 122892 | 7155 | 47 | 3131 | 1 | 0 | 0 | logfile |
✘ | 7PHP | 13424 | 2023-03-13 | 2021-08-18 | 3.47 | 3.48 | — | 3.6 | 0.017 | 0.90 | 0.0 | 0.05 | 14.25 | 0.01 | 2.182 | 6.60 | 0.11 | 7.0 | 93.0 | 0.0 | -1.50 | 0.72 | 0.83 | 3.15 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8647 | 1134 | 8 | 0 | 0 | 21 | 0 | logfile |
✘ | 8B14 | 15802 | 2023-03-17 | 2022-09-09 | 2.6 | 2.13 | 2.61 | 2.0 | 0.007 | 0.68 | 0.0 | 0.05 | 16.80 | 0.01 | 2.163 | 5.79 | 0.79 | 2.8 | 97.2 | 0.0 | 0.27 | 0.80 | 0.81 | 5.41 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18810 | 1243 | 3 | 0 | 2 | 0 | 9112 | logfile |
✘ | 8AVV | 15684 | 2023-03-12 | 2022-08-27 | 3.4 | 3.53 | 3.39 | 3.5 | 0.008 | 1.38 | 0.0 | 0.08 | 18.27 | 0.01 | 2.580 | 1.80 | 5.03 | 4.7 | 95.1 | 0.2 | -3.08 | 0.76 | 0.87 | 2.54 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7794 | 1010 | 4 | 0 | 2 | 0 | 0 | logfile |
✘ | 7WK0 | 32554 | 2023-03-13 | 2022-01-08 | 3.32 | 2.37 | — | 2.2 | 0.004 | 0.65 | 0.0 | 0.04 | 11.04 | 0.01 | 2.233 | 9.59 | 7.71 | 12.2 | 87.5 | 0.2 | -4.96 | 0.75 | 0.75 | 3.28 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9724 | 1264 | 8 | 0 | 2 | 0 | 0 | logfile |
✘ | 6KNG | 0731 | 2023-03-12 | 2019-08-05 | 2.85 | 3.15 | — | 3.1 | 0.005 | 0.65 | 0.0 | 0.05 | 14.34 | 0.00 | 2.093 | 4.97 | 3.68 | 0.9 | 99.1 | 0.0 | -2.31 | 0.83 | 0.91 | 4.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7749 | 1002 | 6 | 0 | 6 | 0 | 0 | logfile |
✘ | 6RDZ | 4836 | 2023-03-12 | 2019-04-12 | 3.5 | 3.36 | — | 3.4 | 0.009 | 0.96 | 1.0 | 0.06 | 14.94 | 0.01 | 1.846 | 6.04 | 0.43 | 5.4 | 94.4 | 0.2 | -4.22 | 0.69 | 0.82 | 2.47 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 53720 | 7099 | 37 | 0 | 11 | 0 | 0 | logfile |
✘ | 6ZZX | 11588 | 2023-03-13 | 2020-08-05 | 2.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 56369 | 4684 | 68 | 0 | 403 | 99 | 0 | logfile |
✘ | 6RDD | 4814 | 2023-03-17 | 2019-04-12 | 3.2 | 3.32 | 3.04 | 3.3 | 0.012 | 1.03 | 0.0 | 0.06 | 13.79 | 0.01 | 2.126 | 4.62 | 0.19 | 4.9 | 94.8 | 0.3 | -5.88 | 0.55 | 0.85 | 3.41 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19856 | 2597 | 19 | 0 | 1 | 30 | 0 | logfile |
✘ | 7WPB | 32681 | 2023-03-12 | 2022-01-23 | 2.79 | 2.94 | — | 2.9 | 0.005 | 0.74 | 0.0 | 0.05 | 15.22 | 0.01 | 2.101 | 3.78 | 0.29 | 3.0 | 97.0 | 0.0 | -4.67 | 0.68 | 0.86 | 4.00 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6491 | 793 | 2 | 0 | 5 | 0 | 0 | logfile |
✘ | 7AA5 | 11690 | 2023-03-17 | 2020-09-03 | 4.18 | 4.64 | — | 4.4 | 0.006 | 0.92 | 2.0 | 0.04 | 14.67 | 0.00 | 2.119 | 21.41 | 2.04 | 15.1 | 84.7 | 0.2 | -4.78 | 0.69 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19705 | 2448 | 5 | 0 | 1 | 0 | 8 | logfile |
✘ | 7KHR | 22880 | 2023-03-14 | 2020-10-21 | 3.62 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 61913 | 8212 | 44 | 0 | 36 | 0 | 0 | logfile |
✘ | 6RDF | 4816 | 2023-03-17 | 2019-04-12 | 3.2 | 3.30 | 3.25 | 3.2 | 0.008 | 0.89 | 0.0 | 0.05 | 13.40 | 0.01 | 2.212 | 4.09 | 0.15 | 4.7 | 95.2 | 0.2 | -6.00 | 0.50 | 0.84 | 3.59 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19855 | 2597 | 18 | 0 | 1 | 29 | 0 | logfile |
✘ | 6BNP | 7116 | 2023-03-13 | 2017-11-17 | 4.6 | 4.61 | 3.78 | 4.4 | 0.015 | 2.10 | 24.0 | 0.11 | 16.18 | 0.02 | 1.814 | 0.55 | 1.80 | 8.3 | 90.3 | 1.3 | -3.94 | 0.48 | 0.46 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 56792 | 7160 | 22 | 0 | 16 | 0 | 0 | logfile |
✘ | 7RBU | 24402 | 2023-03-12 | 2021-07-06 | 3.7 | 2.38 | — | 2.2 | 0.006 | 0.80 | 0.0 | 0.05 | 12.53 | 0.00 | 2.167 | 6.95 | 0.00 | 9.1 | 90.7 | 0.2 | -2.50 | 0.74 | 0.77 | 4.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4107 | 510 | 6 | 0 | 7 | 0 | 0 | logfile |
✘ | 7JRo | 22447 | 2023-03-14 | 2020-08-12 | 3.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12747 | 1492 | 17 | 0 | 26 | 0 | 0 | logfile |
✘ | 7PNK | 13548 | 2023-03-13 | 2021-09-07 | 3.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 60673 | 6142 | 74 | 0 | 250 | 0 | 0 | logfile |
✘ | 6XiT | 22200 | 2023-03-17 | 2020-06-21 | 3.3 | 2.22 | — | 3.5 | 0.010 | 0.97 | 0.0 | 0.06 | 14.19 | 0.01 | 1.894 | 10.11 | 0.74 | 4.0 | 96.0 | 0.0 | -3.79 | 0.65 | 0.73 | 3.11 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10403 | 1308 | 8 | 0 | 7 | 0 | 0 | logfile |
✘ | 6Jii | 9834 | 2023-03-14 | 2019-02-21 | 4.2 | 4.38 | — | 4.1 | 0.008 | 1.12 | 0.0 | 0.06 | 11.41 | 0.01 | 2.208 | 7.63 | 0.57 | 11.2 | 88.4 | 0.4 | -4.07 | 0.78 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 115028 | 15012 | 16 | 0 | 16 | 0 | 0 | logfile |