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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7MN5 | 23916 | 2023-05-04 | 2021-04-30 | 2.93 | 3.53 | 3.04 | 3.3 | 0.013 | 1.46 | 0.0 | 0.08 | 10.99 | 0.01 | 2.311 | 0.48 | 0.00 | 3.3 | 96.7 | 0.0 | -0.05 | 0.82 | 0.81 | 3.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9526 | 1213 | 8 | 0 | 13 | 0 | 0 | logfile |
✘ | 7CUB | 30471 | 2023-05-04 | 2020-08-22 | 2.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9842 | 1199 | 7 | 0 | 9 | 13 | 0 | logfile |
✘ | 7SL7 | 25193 | 2023-05-07 | 2021-10-22 | 3.1 | 3.35 | — | 3.4 | 0.002 | 0.56 | 0.0 | 0.04 | 13.08 | 0.00 | 2.149 | 8.91 | 0.24 | 5.5 | 94.2 | 0.3 | -0.86 | 0.77 | 0.82 | 3.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14732 | 1826 | 10 | 0 | 0 | 0 | 0 | logfile |
✘ | 7UZ7 | 26881 | 2023-05-13 | 2022-05-08 | 2.9 | 3.46 | 3.07 | 3.4 | 0.005 | 0.61 | 0.0 | 0.04 | 12.96 | 0.01 | 2.121 | 9.12 | 0.00 | 3.5 | 96.5 | 0.0 | 0.04 | 0.71 | 0.78 | 2.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30552 | 3861 | 15 | 0 | 45 | 0 | 0 | logfile |
✘ | 8AD1 | 15357 | 2023-05-11 | 2022-07-07 | 4.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28169 | 3403 | 9 | 71 | 3 | 0 | 0 | logfile |
✘ | 7N4U | 24178 | 2023-05-06 | 2021-06-04 | 3.34 | 3.91 | — | 3.8 | 0.014 | 1.80 | 0.0 | 0.29 | 15.32 | 0.01 | 2.102 | 4.84 | 1.79 | 5.3 | 94.5 | 0.2 | -2.74 | 0.58 | 0.74 | 1.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15396 | 1906 | 10 | 0 | 28 | 0 | 0 | logfile |
✘ | 6VoH | 21264 | 2023-05-16 | 2020-01-30 | 4.16 | 3.96 | — | 4.0 | 0.005 | 0.99 | 0.0 | 0.05 | 15.53 | 0.01 | 2.172 | 14.16 | 0.49 | 7.7 | 92.0 | 0.3 | -3.96 | 0.70 | 0.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 39159 | 5193 | 31 | 0 | 5 | 0 | 0 | logfile |
✘ | 8DGC | 27421 | 2023-05-13 | 2022-06-23 | 3.4 | 3.02 | 3.70 | 3.0 | 0.006 | 0.96 | 2.0 | 0.05 | 13.60 | 0.01 | 1.993 | 1.47 | 0.14 | 1.9 | 98.1 | 0.0 | -0.33 | 0.51 | 0.52 | 1.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 81600 | 10216 | 16 | 0 | 16 | 0 | 0 | logfile |
✘ | 3JB9 | 6413 | 2023-05-14 | 2015-08-09 | 3.6 | 3.70 | — | 3.6 | 0.010 | 1.29 | 13.0 | 0.07 | 16.84 | 0.01 | 1.253 | 18.05 | 8.06 | 9.1 | 87.9 | 3.0 | -3.97 | 0.52 | 0.51 | 1.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 86551 | 9194 | 50 | 328 | 1328 | 0 | 0 | logfile |
✘ | 5GKZ | 9519 | 2023-05-04 | 2016-07-07 | 4.0 | 4.10 | — | 4.0 | 0.019 | 1.71 | 36.0 | 0.11 | 11.29 | 0.01 | 1.755 | 15.04 | 0.51 | 6.5 | 91.2 | 2.3 | -2.89 | 0.72 | 0.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 111000 | 15068 | 12 | 0 | 4 | 0 | 0 | logfile |
✘ | 7P2Y | 13174 | 2023-05-15 | 2021-07-06 | 3.1 | 3.84 | — | 3.5 | 0.004 | 0.70 | 0.0 | 0.04 | 11.76 | 0.00 | 2.088 | 10.47 | 0.08 | 3.8 | 96.2 | 0.0 | 0.12 | 0.82 | 0.87 | 2.60 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37172 | 4904 | 30 | 0 | 9 | 3 | 0 | logfile |
✘ | 7CUQ | 30474 | 2023-05-04 | 2020-08-24 | 2.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9834 | 1199 | 6 | 0 | 9 | 0 | 0 | logfile |
✘ | 7YR1 | 34042 | 2023-05-12 | 2022-08-08 | 3.62 | 3.91 | 3.63 | 3.8 | 0.004 | 0.66 | 0.0 | 0.05 | 13.70 | 0.00 | 2.141 | 8.03 | 0.00 | 9.0 | 91.0 | 0.0 | -1.68 | 0.78 | 0.84 | 2.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30336 | 3768 | 36 | 0 | 81 | 0 | 0 | logfile |
✘ | 7JR7 | 22443 | 2023-05-07 | 2020-08-11 | 3.3 | 3.18 | — | 3.3 | 0.010 | 1.34 | 4.0 | 0.08 | 11.83 | 0.01 | 2.254 | 3.49 | 0.57 | 2.6 | 97.0 | 0.4 | 0.62 | 0.65 | 0.79 | 2.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15799 | 2020 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 7D0J | 30536 | 2023-05-09 | 2020-09-10 | 3.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 68860 | 5923 | 56 | 0 | 453 | 0 | 0 | logfile |
✘ | 8CUZ | 27003 | 2023-05-11 | 2022-05-17 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 27791 | 1850 | 4 | 0 | 2 | 0 | 13711 | logfile |
✘ | 8CV0 | 27004 | 2023-05-11 | 2022-05-17 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 27791 | 1850 | 4 | 0 | 2 | 0 | 13711 | logfile |
✘ | 7Z6Q | 14528 | 2023-05-15 | 2022-03-14 | 2.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36557 | 3956 | 28 | 0 | 91 | 10 | 0 | logfile |
✘ | 7SZK | 25571 | 2023-05-12 | 2021-11-28 | 2.94 | 3.14 | — | 3.2 | 0.015 | 0.79 | 0.0 | 0.07 | 14.67 | 0.00 | 1.985 | 31.61 | 0.00 | 6.1 | 93.8 | 0.0 | 0.28 | 0.71 | 0.81 | 2.10 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29759 | 3683 | 10 | 36 | 4 | 0 | 0 | logfile |
✘ | 7UT8 | 26760 | 2023-05-08 | 2022-04-26 | 2.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20221 | 2538 | 18 | 0 | 13 | 29 | 0 | logfile |