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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6o7K | 0643 | 2024-01-18 | 2019-03-08 | 4.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.76 | — | — | — | 4.1 | 0.004 | 0.66 | 0.0 | 0.04 | 21.62 | 0.00 | 2.079 | 19.50 | 0.04 | 8.2 | 91.4 | 0.5 | -1.33 | — | 0.90 | 0.83 | — | 57748 | 2934 | 25 | 1622 | 0 | 0 | 0 | logfile |
✘ | 8CVi | 27008 | 2024-01-20 | 2022-05-18 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 1.49 | — | — | 1.22 | 3.4 | 0.003 | 0.59 | 0.0 | 0.04 | 16.35 | 0.00 | 2.089 | 10.90 | 1.79 | 4.0 | 96.0 | 0.0 | 3.61 | — | 0.58 | 0.85 | 0.95 | 66030 | 8856 | 33 | 0 | 0 | 0 | 0 | logfile |
✘ | 5Z1W | 6877 | 2024-01-20 | 2017-12-28 | 3.38 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -3.34 | — | — | 4.86 | 3.5 | 0.003 | 0.57 | 0.0 | 0.04 | 13.89 | 0.00 | 2.133 | 6.05 | 2.12 | 2.3 | 97.7 | 0.0 | 1.73 | — | 0.67 | 0.86 | 3.18 | 13824 | 1716 | 8 | 0 | 12 | 0 | 0 | logfile |
✘ | 6NT4 | 0501 | 2024-01-19 | 2019-01-28 | 3.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11924 | 1406 | 5 | 0 | 20 | 0 | 0 | logfile |
✘ | 7VDD | 31914 | 2024-01-19 | 2021-09-06 | 3.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11940 | 1044 | 10 | 0 | 0 | 0 | 3736 | logfile |
✘ | 6M5U | 30093 | 2024-01-19 | 2020-03-11 | 3.8 | 3.78 | — | 3.8 | 0.007 | 0.86 | 1.0 | 0.05 | 16.07 | 0.00 | 2.210 | 18.52 | 5.59 | 9.0 | 90.8 | 0.2 | -3.03 | 0.62 | 0.81 | 1.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10549 | 1359 | 5 | 0 | 5 | 0 | 0 | logfile |
✘ | 7PD3 | 13329 | 2024-01-17 | 2021-08-04 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 108076 | 9276 | 76 | 1522 | 125 | 0 | 0 | logfile |
✘ | 7VKT | 32018 | 2024-01-18 | 2021-10-01 | 2.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9100 | 1143 | 6 | 0 | 6 | 7 | 0 | logfile |
✘ | 7Z10 | 14436 | 2024-01-19 | 2022-02-24 | 3.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12574 | 1556 | 13 | 0 | 9 | 0 | 0 | logfile |
✘ | 8CS9 | 26960 | 2024-01-18 | 2022-05-12 | 2.74 | 1.95 | — | 1.6 | 0.006 | 0.85 | 0.0 | 0.05 | 18.63 | 0.01 | 2.218 | 10.20 | 3.66 | 2.2 | 97.5 | 0.3 | 0.33 | 0.82 | 0.81 | 3.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 60944 | 7677 | 39 | 0 | 27 | 268 | 0 | logfile |
✘ | 6LMK | 0917 | 2024-01-18 | 2019-12-26 | 3.7 | 3.89 | — | 3.8 | 0.009 | 0.96 | 0.0 | 0.06 | 15.10 | 0.01 | 2.283 | 7.02 | 0.62 | 6.5 | 93.5 | 0.0 | -4.19 | 0.68 | 0.82 | 1.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9240 | 1178 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 7TJ9 | 25920 | 2024-01-19 | 2022-01-14 | 2.9 | 3.19 | — | 3.1 | 0.017 | 1.02 | 0.0 | 0.06 | 18.48 | 0.01 | 2.167 | 6.06 | 0.09 | 5.0 | 95.0 | 0.0 | 0.12 | 0.56 | 0.82 | 2.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10975 | 1273 | 5 | 0 | 24 | 0 | 0 | logfile |
✘ | 7CH9 | 30372 | 2024-01-20 | 2020-07-05 | 3.5 | 3.92 | — | 3.8 | 0.005 | 0.82 | 0.0 | 0.04 | 18.11 | 0.00 | 2.032 | 18.63 | 10.34 | 9.6 | 90.4 | 0.0 | -4.56 | 0.69 | 0.78 | 0.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15978 | 2126 | 19 | 0 | 10 | 0 | 0 | logfile |
✘ | 8HC8 | 34655 | 2024-01-17 | 2022-11-01 | 3.95 | 4.00 | 3.84 | 4.0 | 0.003 | 0.71 | 0.0 | 0.05 | 16.60 | 0.01 | 2.317 | 5.70 | 0.56 | 4.2 | 95.8 | 0.0 | -1.17 | 0.64 | 0.70 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4832 | 628 | 4 | 0 | 1 | 0 | 0 | logfile |
✘ | 7W7F | 32343 | 2024-01-19 | 2021-12-04 | 3.35 | 3.74 | — | 3.7 | 0.015 | 1.03 | 0.0 | 0.07 | 18.83 | 0.01 | 2.144 | 13.75 | 0.31 | 8.1 | 91.6 | 0.3 | -1.42 | 0.42 | 0.74 | 1.86 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11987 | 1424 | 7 | 0 | 29 | 0 | 0 | logfile |
✘ | 8B4o | 15851 | 2024-01-17 | 2022-09-20 | 2.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6156 | 772 | 2 | 0 | 3 | 0 | 0 | logfile |
✘ | 7EJ8 | 31156 | 2024-01-18 | 2021-04-01 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8647 | 1100 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 7ZDW | 14675 | 2024-01-18 | 2022-03-29 | 3.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9039 | 1159 | 2 | 0 | 3 | 0 | 0 | logfile |
✘ | 7MD3 | 23764 | 2024-01-20 | 2021-04-03 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 45992 | 3133 | 13 | 0 | 8 | 0 | 22961 | logfile |
✘ | 7SCJ | 25036 | 2024-01-18 | 2021-09-28 | 3.4 | 2.31 | 2.97 | 2.0 | 0.004 | 0.60 | 0.0 | 0.05 | 14.18 | 0.01 | 2.200 | 9.22 | 0.00 | 5.7 | 94.3 | 0.0 | -0.25 | 0.75 | 0.72 | 3.17 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9336 | 1131 | 6 | 2 | 7 | 0 | 0 | logfile |