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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8D1B | 27121 | 2024-01-17 | 2022-05-27 | 3.57 | 3.85 | 3.45 | 3.8 | 0.006 | 1.09 | 0.0 | 0.05 | 14.42 | 0.01 | 2.084 | 19.71 | 0.28 | 24.1 | 75.9 | 0.0 | -6.32 | 0.76 | 0.81 | 2.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6724 | 874 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 3A5X | 1641 | 2024-01-17 | 2009-08-13 | 4.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -4.41 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3616 | 494 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 8SA2 | 40262 | 2024-01-18 | 2023-03-31 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9268 | 0 | 4 | 420 | 2 | 0 | 0 | logfile |
✘ | 6K42 | 9912 | 2024-01-18 | 2019-05-23 | 4.1 | 4.04 | — | 4.1 | 0.005 | 0.82 | 0.0 | 0.05 | 9.24 | 0.01 | 2.288 | 4.50 | 0.31 | 5.4 | 94.6 | 0.0 | -4.37 | 0.60 | 0.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8816 | 1116 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 7N6B | 24206 | 2024-01-17 | 2021-06-08 | 2.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5942 | 757 | 1 | 0 | 2 | 0 | 0 | logfile |
✘ | 8FGX | 29077 | 2024-01-19 | 2022-12-13 | 2.62 | 3.60 | 2.58 | 3.0 | 0.003 | 0.45 | 0.0 | 0.04 | 9.99 | 0.00 | 2.400 | 1.82 | 0.00 | 1.6 | 98.4 | 0.0 | 1.41 | 0.90 | 0.88 | 4.89 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9899 | 645 | 4 | 0 | 3 | 0 | 4873 | logfile |
✘ | 2XEA | 1730 | 2024-01-19 | 2010-05-12 | 4.6 | 4.10 | — | 4.2 | 0.012 | 2.12 | 0.0 | 0.12 | 20.75 | 0.02 | 1.226 | 2.63 | 3.68 | 8.6 | 90.1 | 1.3 | -3.51 | 0.39 | 0.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62671 | 7546 | 98 | 147 | 0 | 0 | 0 | logfile |
✘ | 8ADW | 15372 | 2024-01-17 | 2022-07-11 | 2.95 | 2.93 | 2.87 | 3.0 | 0.009 | 1.46 | 0.0 | 0.07 | 22.42 | 0.01 | 2.469 | 8.01 | 23.33 | 7.7 | 92.3 | 0.0 | -4.02 | 0.51 | 0.80 | 4.38 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6920 | 990 | 10 | 0 | 0 | 0 | 0 | logfile |
✘ | 6HXX | 0297 | 2024-01-20 | 2018-10-18 | 3.4 | 3.76 | 3.51 | 3.7 | 0.008 | 1.14 | 0.0 | 0.07 | 12.31 | 0.01 | 1.586 | 8.35 | 0.28 | 8.1 | 91.9 | 0.0 | -3.79 | 0.53 | 0.84 | 2.51 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 65765 | 7840 | 70 | 175 | 0 | 0 | 0 | logfile |
✘ | 7QJV | 14023 | 2024-01-20 | 2021-12-17 | 3.29 | 3.75 | 2.41 | 3.4 | 0.012 | 2.13 | 7.0 | 0.11 | 11.77 | 0.01 | 2.497 | 0.72 | 0.13 | 9.5 | 90.5 | 0.0 | -2.07 | 0.44 | 0.77 | 2.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13860 | 900 | 12 | 0 | 0 | 0 | 7056 | logfile |
✘ | 8CE7 | 16600 | 2024-01-19 | 2023-02-01 | 2.7 | 2.34 | 2.46 | 2.7 | 0.010 | 1.47 | 12.0 | 0.09 | 13.19 | 0.01 | 0.000 | 16.71 | 3.33 | 9.0 | 91.0 | 0.0 | -3.63 | 0.44 | 0.73 | 6.36 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10512 | 1512 | 24 | 0 | 0 | 0 | 0 | logfile |
✘ | 8BQV | 16188 | 2024-01-18 | 2023-01-18 | 2.0 | 1.96 | 1.89 | 1.9 | 0.008 | 1.01 | 0.0 | 0.07 | 8.75 | 0.00 | 0.000 | 15.01 | 0.00 | 6.8 | 93.2 | 0.0 | -2.59 | 0.54 | 0.77 | 8.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8595 | 1155 | 45 | 0 | 105 | 120 | 0 | logfile |
✘ | 6N1i | 8903 | 2024-01-19 | 2018-11-08 | 3.58 | 3.63 | — | 3.6 | 0.009 | 1.13 | 0.0 | 0.06 | 9.87 | 0.01 | 1.147 | 27.10 | 0.00 | 2.4 | 97.6 | 0.0 | -6.04 | 0.42 | 0.58 | 0.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11136 | 1360 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 8BD3 | 15973 | 2024-01-20 | 2022-10-18 | 2.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 117990 | 10804 | 166 | 0 | 722 | 224 | 0 | logfile |
✘ | 8AZT | 15771 | 2024-01-17 | 2022-09-06 | 3.7 | 3.48 | 2.93 | 4.2 | 0.011 | 1.98 | 0.0 | 0.11 | 15.54 | 0.01 | 0.000 | 19.56 | 4.35 | 10.3 | 89.7 | 0.0 | -6.12 | 0.40 | 0.59 | 5.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5424 | 744 | 24 | 0 | 0 | 0 | 0 | logfile |
✘ | 8BVR | 16269 | 2024-01-17 | 2022-12-05 | 3.52 | 4.00 | 3.61 | 3.9 | 0.005 | 0.72 | 0.0 | 0.04 | 17.01 | 0.01 | 2.178 | 12.22 | 0.19 | 4.6 | 95.4 | 0.0 | 0.64 | 0.62 | 0.78 | 1.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4806 | 617 | 3 | 0 | 3 | 0 | 0 | logfile |
✘ | 5LJV | 4062 | 2024-01-20 | 2016-07-21 | 3.64 | 3.75 | — | 3.7 | 0.030 | 2.85 | 85.0 | 0.16 | 18.81 | 0.02 | 2.070 | 21.28 | 11.82 | 7.4 | 89.7 | 2.9 | -4.53 | 0.71 | 0.84 | 2.85 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15000 | 1950 | 12 | 0 | 12 | 0 | 0 | logfile |
✘ | 6BNP | 7116 | 2024-01-18 | 2017-11-17 | 4.6 | 4.61 | 3.78 | 4.4 | 0.015 | 2.10 | 24.0 | 0.11 | 16.18 | 0.02 | 1.814 | 0.55 | 1.80 | 8.3 | 90.3 | 1.3 | -3.94 | 0.48 | 0.46 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 56792 | 7160 | 22 | 0 | 16 | 0 | 0 | logfile |
✘ | 8DZQ | 27805 | 2024-01-18 | 2022-08-08 | 2.82 | 2.18 | 2.79 | 2.1 | 0.019 | 0.79 | 0.0 | 0.11 | 13.38 | 0.00 | 2.244 | 6.40 | 0.23 | 6.2 | 93.8 | 0.0 | -0.46 | 0.74 | 0.71 | 3.49 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8342 | 1100 | 5 | 0 | 1 | 0 | 0 | logfile |
✘ | 7PiJ | 13438 | 2024-01-18 | 2021-08-20 | 3.78 | 4.14 | — | 4.1 | 0.015 | 1.17 | 0.0 | 0.05 | 13.54 | 0.01 | 1.166 | 13.45 | 0.11 | 10.6 | 89.3 | 0.1 | -3.26 | 0.50 | 0.53 | 1.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8194 | 1068 | 8 | 0 | 0 | 16 | 0 | logfile |