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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7D73 | 30600 | 2023-05-15 | 2020-10-02 | 3.0 | 2.48 | — | 2.7 | 0.011 | 1.23 | 7.0 | 0.07 | 19.92 | 0.01 | 1.302 | 10.00 | 10.36 | 6.3 | 93.4 | 0.3 | -3.01 | 0.55 | 0.71 | 2.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35292 | 4495 | 24 | 0 | 12 | 0 | 0 | logfile |
✘ | 7X0X | 32928 | 2023-05-12 | 2022-02-22 | 2.56 | 3.09 | 2.66 | 3.0 | 0.008 | 1.00 | 0.0 | 0.06 | 15.31 | 0.01 | 2.280 | 3.83 | 1.15 | 4.7 | 95.3 | 0.0 | -5.09 | 0.74 | 0.82 | 4.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15680 | 1904 | 8 | 0 | 4 | 0 | 0 | logfile |
✘ | 7NNL | 12478 | 2023-05-05 | 2021-02-25 | 3.1 | 3.27 | 3.06 | 3.2 | 0.006 | 0.91 | 0.0 | 0.05 | 15.46 | 0.01 | 2.230 | 6.05 | 0.00 | 3.7 | 96.3 | 0.0 | -1.05 | 0.70 | 0.85 | 2.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11099 | 1456 | 6 | 0 | 13 | 0 | 0 | logfile |
✘ | 7XQi | 33397 | 2023-05-04 | 2022-05-07 | 3.7 | 4.27 | 3.41 | 4.0 | 0.006 | 0.72 | 0.0 | 0.04 | 14.16 | 0.00 | 2.304 | 5.68 | 2.27 | 2.1 | 97.9 | 0.0 | -2.27 | 0.76 | 0.86 | 3.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9582 | 1176 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 7XEo | 33157 | 2023-05-08 | 2022-03-31 | 2.89 | 3.27 | 3.13 | 3.3 | 0.003 | 0.70 | 4.0 | 0.05 | 12.94 | 0.00 | 2.214 | 13.56 | 0.74 | 4.3 | 94.7 | 1.0 | 0.03 | 0.75 | 0.82 | 2.38 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19980 | 2456 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 7W01 | 32233 | 2023-05-05 | 2021-11-17 | 3.3 | 3.43 | — | 3.4 | 0.011 | 1.11 | 1.0 | 0.06 | 15.95 | 0.01 | 1.717 | 9.85 | 0.60 | 13.3 | 85.9 | 0.8 | -4.55 | 0.68 | 0.86 | 2.97 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12724 | 1598 | 1 | 0 | 7 | 0 | 0 | logfile |
✘ | 8FE1 | 29019 | 2023-05-06 | 2022-12-05 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15445 | 1772 | 10 | 0 | 48 | 0 | 0 | logfile |
✘ | 7UNL | 26626 | 2023-05-05 | 2022-04-11 | 2.45 | 3.35 | 2.50 | 3.1 | 0.003 | 0.56 | 0.0 | 0.04 | 14.66 | 0.00 | 2.143 | 2.41 | 1.94 | 1.1 | 98.9 | 0.0 | 2.30 | 0.72 | 0.83 | 3.52 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11724 | 734 | 6 | 0 | 8 | 120 | 5900 | logfile |
✘ | 7AR8 | 11876 | 2023-05-05 | 2020-10-23 | 3.53 | 3.65 | 3.41 | 3.6 | 0.004 | 0.73 | 0.0 | 0.07 | 14.85 | 0.00 | 2.002 | 12.79 | 0.03 | 7.3 | 92.7 | 0.0 | -0.59 | 0.78 | 0.83 | 2.08 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 61461 | 7676 | 64 | 0 | 55 | 0 | 0 | logfile |
✘ | 7VYS | 32214 | 2023-05-16 | 2021-11-15 | 2.5 | 2.59 | — | 2.6 | 0.008 | 0.85 | 0.0 | 0.04 | 18.82 | 0.01 | 1.328 | 6.47 | 0.97 | 3.5 | 96.4 | 0.1 | 1.73 | 0.76 | 0.91 | 4.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40113 | 4727 | 64 | 0 | 27 | 425 | 0 | logfile |
✘ | 7VoY | 32062 | 2023-05-09 | 2021-10-15 | 4.2 | 3.14 | — | 3.1 | 0.009 | 0.97 | 0.0 | 0.10 | 14.41 | 0.01 | 2.056 | 16.17 | 1.25 | 4.6 | 95.4 | 0.0 | 0.99 | 0.45 | 0.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22119 | 2479 | 71 | 0 | 44 | 0 | 0 | logfile |
✘ | 6NT4 | 0501 | 2023-05-05 | 2019-01-28 | 3.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11924 | 1406 | 5 | 0 | 20 | 0 | 0 | logfile |
✘ | 6NT3 | 0500 | 2023-05-05 | 2019-01-28 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10934 | 1278 | 5 | 0 | 20 | 0 | 0 | logfile |
✘ | 7MDi | 23773 | 2023-05-13 | 2021-04-05 | 4.3 | 4.42 | — | 4.3 | 0.006 | 0.75 | 0.0 | 0.04 | 13.13 | 0.00 | 2.089 | 11.76 | 0.17 | 10.8 | 89.2 | 0.1 | -4.24 | 0.78 | 0.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30608 | 4348 | 20 | 0 | 24 | 24 | 0 | logfile |
✘ | 7PD3 | 13329 | 2023-05-03 | 2021-08-04 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 108076 | 9276 | 76 | 1522 | 125 | 0 | 0 | logfile |
✘ | 7V7N | 31775 | 2023-05-10 | 2021-08-21 | 2.9 | 3.77 | — | 3.2 | 0.005 | 0.62 | 0.0 | 0.05 | 13.70 | 0.00 | 2.171 | 6.62 | 0.00 | 5.4 | 94.4 | 0.1 | 0.11 | 0.89 | 0.87 | 2.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25430 | 3101 | 42 | 0 | 85 | 0 | 0 | logfile |
✘ | 7SCJ | 25036 | 2023-05-04 | 2021-09-28 | 3.4 | 2.31 | 2.97 | 2.0 | 0.004 | 0.60 | 0.0 | 0.05 | 11.12 | 0.01 | 2.200 | 9.22 | 0.00 | 5.7 | 94.3 | 0.0 | -0.25 | 0.75 | 0.72 | 3.17 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9336 | 1131 | 6 | 2 | 7 | 0 | 0 | logfile |
✘ | 7WRF | 32725 | 2023-05-13 | 2022-01-26 | 3.04 | 3.32 | — | 3.3 | 0.008 | 0.99 | 0.0 | 0.06 | 10.46 | 0.01 | 2.294 | 4.47 | 0.12 | 6.2 | 93.8 | 0.0 | -3.74 | 0.71 | 0.81 | 3.17 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30469 | 3720 | 8 | 0 | 9 | 0 | 0 | logfile |
✘ | 6JP8 | 9867 | 2023-05-09 | 2019-03-26 | 2.7 | 2.51 | — | 2.6 | 0.013 | 1.48 | 8.0 | 0.12 | 14.01 | 0.01 | 1.877 | 25.96 | 6.07 | 7.2 | 92.3 | 0.5 | -4.05 | 0.38 | 0.52 | 1.99 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21801 | 2694 | 14 | 0 | 29 | 0 | 0 | logfile |
✘ | 7AoC | 11840 | 2023-05-12 | 2020-10-14 | 3.84 | 3.91 | — | 3.9 | 0.007 | 0.88 | 0.0 | 0.05 | 15.05 | 0.01 | 1.929 | 15.82 | 0.33 | 11.2 | 88.5 | 0.3 | -4.08 | 0.70 | 0.81 | 1.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29724 | 3746 | 17 | 0 | 6 | 0 | 0 | logfile |