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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6J99 | 9783 | 2023-10-10 | 2019-01-22 | 4.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.88 | — | — | — | 4.1 | 0.004 | 0.79 | 0.0 | 0.04 | 27.39 | 0.00 | 2.135 | 19.54 | 0.20 | 5.7 | 94.3 | 0.0 | -0.95 | — | 0.78 | 0.78 | — | 15266 | 1164 | 12 | 289 | 0 | 0 | 0 | logfile |
✘ | 6PPE | 20434 | 2023-10-20 | 2019-07-06 | 3.19 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.78 | — | — | 4.24 | 3.5 | 0.004 | 0.55 | 0.0 | 0.04 | 14.59 | 0.00 | 1.924 | 5.42 | 0.00 | 2.3 | 97.7 | 0.0 | 1.70 | — | 0.77 | 0.86 | 3.68 | 43736 | 2814 | 42 | 0 | 0 | 14 | 21896 | logfile |
✘ | 6PPD | 20433 | 2023-10-10 | 2019-07-06 | 3.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -4.49 | — | — | 2.40 | 3.6 | 0.004 | 0.72 | 0.0 | 0.04 | 15.94 | 0.00 | 2.084 | 10.22 | 0.40 | 4.9 | 95.0 | 0.0 | -1.64 | — | 0.50 | 0.82 | 2.02 | 68769 | 8728 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 8F8S | 28935 | 2023-10-10 | 2022-11-22 | 2.84 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -0.35 | — | — | 3.68 | 1.9 | 0.003 | 0.66 | 0.0 | 0.05 | 17.12 | 0.00 | 1.972 | 7.88 | 1.88 | 3.5 | 96.5 | 0.0 | 0.36 | — | 0.79 | 0.84 | 3.18 | 20371 | 2579 | 14 | 0 | 14 | 0 | 0 | logfile |
✘ | 6o7K | 0643 | 2023-10-04 | 2019-03-08 | 4.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.76 | — | — | — | 4.1 | 0.005 | 0.71 | 0.0 | 0.04 | 15.42 | 0.01 | 2.070 | 22.73 | 0.00 | 8.6 | 91.0 | 0.4 | -1.53 | — | 0.90 | 0.84 | — | 57748 | 2934 | 25 | 1622 | 0 | 0 | 0 | logfile |
✘ | 6o9K | 0662 | 2023-10-21 | 2019-03-14 | 4.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.96 | — | — | — | 4.0 | 0.003 | 0.71 | 0.0 | 0.03 | 16.29 | 0.01 | 2.027 | 24.45 | 0.78 | 8.9 | 90.5 | 0.5 | -2.16 | — | 0.92 | 0.85 | — | 146597 | 6162 | 55 | 4594 | 0 | 0 | 0 | logfile |
✘ | 6PV6 | 20486 | 2023-10-08 | 2019-07-19 | 4.5 | 5.79 | — | 3.8 | 0.006 | 1.04 | 0.0 | 0.05 | 10.65 | 0.01 | 1.373 | 9.47 | 0.31 | 11.0 | 88.9 | 0.1 | -4.72 | 0.60 | 0.39 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 120756 | 13500 | 12 | 0 | 3608 | 0 | 0 | logfile |
✘ | 7JMG | 22393 | 2023-10-08 | 2020-07-31 | 4.5 | 7.15 | — | 4.3 | 0.005 | 0.93 | 0.0 | 0.05 | 9.82 | 0.01 | 1.373 | 7.38 | 0.27 | 10.3 | 89.6 | 0.1 | -4.77 | 0.57 | 0.34 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 120756 | 13500 | 12 | 0 | 3608 | 0 | 0 | logfile |
✘ | 7LWD | 23545 | 2023-10-03 | 2021-03-01 | 3.65 | 3.91 | 3.58 | 3.9 | 0.011 | 0.97 | 0.0 | 0.04 | 14.88 | 0.00 | 2.024 | 11.24 | 0.00 | 6.4 | 93.6 | 0.0 | -4.15 | 0.67 | 0.81 | 2.29 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6163 | 769 | 4 | 0 | 3 | 0 | 0 | logfile |
✘ | 7MGW | 23830 | 2023-10-03 | 2021-04-13 | 3.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6223 | 765 | 5 | 0 | 18 | 0 | 0 | logfile |
✘ | 7ZDL | 14653 | 2023-10-04 | 2022-03-29 | 3.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9029 | 1152 | 4 | 0 | 5 | 0 | 0 | logfile |
✘ | 7DWQ | 30882 | 2023-10-09 | 2021-01-17 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19961 | 1943 | 18 | 0 | 100 | 0 | 0 | logfile |
✘ | 7TFJ | 25874 | 2023-10-10 | 2022-01-06 | 3.3 | 3.54 | — | 3.5 | 0.003 | 0.62 | 0.0 | 0.04 | 14.87 | 0.00 | 2.088 | 7.61 | 0.09 | 2.8 | 97.2 | 0.0 | 0.19 | 0.76 | 0.81 | 2.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20607 | 2486 | 15 | 42 | 9 | 0 | 0 | logfile |
✘ | 6UMM | 20820 | 2023-10-11 | 2019-10-09 | 3.7 | 6.74 | 4.15 | 4.0 | 0.006 | 0.79 | 0.0 | 0.04 | 13.23 | 0.00 | 2.203 | 11.97 | 0.17 | 4.8 | 95.2 | 0.0 | -2.07 | 0.55 | 0.56 | -0.10 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23658 | 3184 | 10 | 0 | 0 | 0 | 0 | logfile |
✘ | 7JMJ | 22396 | 2023-10-08 | 2020-07-31 | 4.5 | 5.51 | — | 4.3 | 0.007 | 1.08 | 0.0 | 0.05 | 10.58 | 0.01 | 1.373 | 9.90 | 0.62 | 11.3 | 88.5 | 0.3 | -4.67 | 0.56 | 0.31 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 120756 | 13500 | 12 | 0 | 3608 | 0 | 0 | logfile |
✘ | 5WSG | 6684 | 2023-10-12 | 2016-12-07 | 4.0 | 4.08 | — | 4.0 | 0.015 | 1.47 | 46.0 | 0.08 | 14.82 | 0.01 | 1.580 | 27.87 | 1.96 | 12.5 | 85.9 | 1.6 | -4.87 | 0.46 | 0.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 76730 | 8620 | 51 | 376 | 883 | 0 | 0 | logfile |
✘ | 8DGJ | 27427 | 2023-10-06 | 2022-06-23 | 4.02 | 4.32 | 4.05 | 4.1 | 0.007 | 1.24 | 2.0 | 0.06 | 14.25 | 0.01 | 2.213 | 11.07 | 0.13 | 7.4 | 92.3 | 0.3 | -2.71 | 0.69 | 0.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13574 | 1689 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 8BDR | 15984 | 2023-10-17 | 2022-10-19 | 2.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36256 | 2173 | 8 | 43 | 3 | 0 | 17940 | logfile |
✘ | 5WP6 | 8871 | 2023-10-14 | 2017-08-03 | 3.8 | 4.03 | — | 3.8 | 0.062 | 4.81 | 0.0 | 0.06 | 10.88 | 0.01 | 2.083 | 3.10 | 0.30 | 6.7 | 93.3 | 0.0 | -3.61 | 0.70 | 0.83 | 2.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29036 | 3908 | 8 | 0 | 8 | 0 | 0 | logfile |
✘ | 7ZDB | 14640 | 2023-10-04 | 2022-03-29 | 3.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8803 | 1122 | 4 | 0 | 6 | 0 | 0 | logfile |