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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6R91 | 4765 | 2023-10-19 | 2019-04-02 | 4.1 | 5.15 | — | 5.0 | 0.006 | 1.01 | 0.0 | 0.05 | 23.74 | 0.01 | 2.021 | 3.55 | 0.65 | 4.6 | 95.0 | 0.5 | -0.83 | 0.64 | 0.52 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40540 | 1969 | 12 | 290 | 0 | 0 | 19063 | logfile |
✘ | 7N4E | 24148 | 2023-10-14 | 2021-06-04 | 3.8 | 3.85 | — | 3.8 | 0.004 | 0.72 | 0.0 | 0.04 | 17.45 | 0.01 | 1.705 | 13.32 | 3.45 | 4.3 | 95.7 | 0.0 | -0.65 | 0.78 | 0.77 | 1.01 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29822 | 3559 | 10 | 89 | 3 | 0 | 0 | logfile |
✘ | 6ACH | 9592 | 2023-10-11 | 2018-07-26 | 3.2 | 3.31 | — | 3.3 | 0.016 | 1.36 | 0.0 | 0.07 | 10.69 | 0.01 | 2.261 | 2.79 | 1.03 | 7.2 | 92.8 | 0.0 | -3.92 | 0.74 | 0.81 | 4.44 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23240 | 2912 | 16 | 0 | 8 | 0 | 0 | logfile |
✘ | 8CVP | 27012 | 2023-10-05 | 2022-05-18 | 3.4 | 3.75 | 3.50 | 3.7 | 0.003 | 0.58 | 0.0 | 0.04 | 13.05 | 0.00 | 2.231 | 4.87 | 0.12 | 6.1 | 93.8 | 0.1 | -1.69 | 0.69 | 0.74 | 3.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10112 | 1484 | 2 | 0 | 1 | 0 | 0 | logfile |
✘ | 7E8C | 31014 | 2023-10-19 | 2021-03-01 | 3.16 | 2.56 | 3.11 | 2.5 | 0.006 | 0.98 | 3.0 | 0.06 | 16.36 | 0.01 | 1.508 | 13.70 | 9.23 | 7.7 | 92.0 | 0.3 | -1.93 | 0.71 | 0.70 | 2.21 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40225 | 5218 | 21 | 0 | 0 | 0 | 0 | logfile |
✘ | 7VGS | 31978 | 2023-10-07 | 2021-09-18 | 2.8 | 3.28 | — | 3.3 | 0.002 | 0.66 | 0.0 | 0.04 | 12.19 | 0.01 | 2.230 | 9.89 | 0.38 | 7.0 | 93.0 | 0.0 | -1.16 | 0.67 | 0.75 | 2.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9700 | 1254 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 7W2Z | 32268 | 2023-10-04 | 2021-11-24 | 2.8 | 3.01 | — | 3.0 | 0.009 | 1.13 | 1.0 | 0.06 | 14.53 | 0.01 | 2.078 | 8.01 | 0.82 | 3.6 | 96.3 | 0.1 | -4.01 | 0.60 | 0.80 | 4.19 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9080 | 1154 | 7 | 0 | 3 | 0 | 0 | logfile |
✘ | 6Mi8 | 9126 | 2023-10-03 | 2018-09-19 | 4.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7139 | 911 | 6 | 0 | 2 | 0 | 0 | logfile |
✘ | 7VZG | 32228 | 2023-10-11 | 2021-11-16 | 2.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22458 | 2402 | 25 | 0 | 119 | 6 | 0 | logfile |
✘ | 6JEo | 9807 | 2023-10-17 | 2019-02-06 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 94576 | 8774 | 88 | 0 | 504 | 0 | 0 | logfile |
✘ | 7oSE | 13048 | 2023-10-07 | 2021-06-08 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14882 | 1816 | 12 | 0 | 10 | 2 | 0 | logfile |
✘ | 8A01 | 15044 | 2023-10-03 | 2022-05-26 | 3.2 | 3.25 | 3.20 | 3.2 | 0.002 | 0.44 | 0.0 | 0.05 | 14.81 | 0.00 | 2.289 | 4.13 | 0.00 | 2.0 | 98.0 | 0.0 | 0.02 | 0.48 | 0.86 | 2.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5511 | 717 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 7EQ9 | 31256 | 2023-10-05 | 2021-04-30 | 3.3 | 3.70 | 3.42 | 3.6 | 0.002 | 0.47 | 0.0 | 0.04 | 15.65 | 0.00 | 2.267 | 3.70 | 0.00 | 3.3 | 96.7 | 0.0 | 1.85 | 0.60 | 0.53 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62520 | 7620 | 60 | 0 | 0 | 0 | 0 | logfile |
✘ | 6A69 | 6987 | 2023-10-03 | 2018-06-27 | 4.11 | 4.21 | — | 4.1 | 0.011 | 1.48 | 0.0 | 0.07 | 11.86 | 0.01 | 2.275 | 7.51 | 1.81 | 13.5 | 86.4 | 0.1 | -4.69 | 0.61 | 0.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7851 | 1038 | 2 | 0 | 1 | 0 | 0 | logfile |
✘ | 7XTA | 33444 | 2023-10-08 | 2022-05-16 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17478 | 1115 | 5 | 0 | 1 | 0 | 8707 | logfile |
✘ | 7oE7 | 12861 | 2023-10-05 | 2021-05-01 | 3.73 | 3.95 | 3.97 | 3.7 | 0.002 | 0.53 | 0.0 | 0.04 | 14.33 | 0.00 | 2.084 | 3.86 | 0.00 | 6.8 | 93.2 | 0.0 | -1.48 | 0.79 | 0.64 | 0.91 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11116 | 1382 | 1 | 0 | 2 | 0 | 0 | logfile |
✘ | 3J9J | 5778 | 2023-10-10 | 2015-02-02 | 3.275 | 3.52 | 3.19 | 3.6 | 0.015 | 1.08 | 0.0 | 0.09 | 9.35 | 0.01 | 2.266 | 2.70 | 0.00 | 3.3 | 94.5 | 2.2 | -0.65 | 0.53 | 0.57 | 2.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21068 | 1260 | 4 | 0 | 0 | 0 | 10624 | logfile |
✘ | 5GJW | 9515 | 2023-10-10 | 2016-07-02 | 3.9 | 4.02 | — | 4.0 | 0.012 | 1.51 | 20.0 | 0.08 | 11.56 | 0.01 | 1.844 | 12.82 | 1.50 | 12.8 | 85.5 | 1.7 | -5.28 | 0.55 | 0.80 | 1.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21561 | 2676 | 14 | 0 | 29 | 0 | 0 | logfile |
✘ | 7SWP | 25478 | 2023-10-02 | 2021-11-20 | 3.8 | 3.74 | — | 4.0 | 0.008 | 0.92 | 0.0 | 0.05 | 12.87 | 0.01 | 2.202 | 40.14 | 0.00 | 12.1 | 87.9 | 0.0 | -2.17 | 0.51 | 0.71 | 1.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3372 | 436 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 8EFB | 28077 | 2023-10-04 | 2022-09-08 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8947 | 1136 | 6 | 0 | 1 | 0 | 0 | logfile |