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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6VoY | 21301 | 2023-05-07 | 2020-02-01 | 3.7 | 4.09 | — | 4.0 | 0.013 | 1.52 | 30.0 | 0.10 | 24.39 | 0.01 | 1.583 | 35.03 | 0.46 | 2.4 | 97.6 | 0.0 | -6.32 | 0.69 | 0.82 | 2.12 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17556 | 1724 | 16 | 180 | 6 | 0 | 0 | logfile |
✘ | 7Y6i | 33641 | 2023-05-03 | 2022-06-20 | 2.85 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8176 | 938 | 8 | 0 | 37 | 6 | 0 | logfile |
✘ | 7XYA | 33515 | 2023-05-11 | 2022-06-01 | 3.3 | 3.39 | 3.24 | 3.2 | 0.004 | 0.68 | 1.0 | 0.04 | 18.79 | 0.00 | 1.962 | 11.59 | 1.00 | 4.0 | 95.9 | 0.0 | -0.19 | 0.81 | 0.84 | 1.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 26550 | 3479 | 11 | 126 | 1 | 0 | 0 | logfile |
✘ | 7XYB | 33516 | 2023-05-09 | 2022-06-01 | 3.7 | 4.48 | 3.71 | 3.3 | 0.005 | 0.75 | 1.0 | 0.05 | 16.21 | 0.00 | 1.956 | 17.39 | 0.62 | 4.8 | 95.0 | 0.2 | -0.49 | 0.87 | 0.82 | 1.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22525 | 3187 | 10 | 65 | 1 | 0 | 0 | logfile |
✘ | 3JC7 | 6536 | 2023-05-16 | 2015-11-24 | 4.8 | 5.23 | — | 4.8 | 0.009 | 1.57 | 7.0 | 0.07 | 12.16 | 0.01 | 0.163 | 42.92 | 0.45 | 8.5 | 90.1 | 1.3 | -4.10 | 0.75 | 0.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40298 | 5075 | 12 | 0 | 1 | 0 | 0 | logfile |
✘ | 7N0L | 24108 | 2023-05-03 | 2021-05-25 | 2.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5270 | 626 | 4 | 0 | 2 | 0 | 0 | logfile |
✘ | 7FD5 | 31535 | 2023-05-15 | 2021-07-16 | 2.4 | 3.12 | — | 2.9 | 0.015 | 1.23 | 4.0 | 0.07 | 11.36 | 0.01 | 2.203 | 5.63 | 0.51 | 6.3 | 93.5 | 0.2 | -3.77 | 0.71 | 0.72 | 3.86 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37179 | 4674 | 13 | 0 | 34 | 0 | 0 | logfile |
✘ | 8G6X | 29787 | 2023-05-15 | 2023-02-16 | 2.31 | 1.96 | 2.20 | 2.0 | 0.011 | 0.99 | 0.0 | 0.06 | 15.24 | 0.03 | 1.474 | 7.58 | 5.85 | 4.1 | 95.8 | 0.2 | -2.02 | 0.68 | 0.83 | 5.32 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 93873 | 3177 | 72 | 3037 | 252 | 3462 | 0 | logfile |
✘ | 7BL2 | 12215 | 2023-05-15 | 2021-01-18 | 3.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✘ | 6CVM | 7770 | 2023-05-15 | 2018-03-28 | 1.9 | 2.49 | 1.94 | 2.3 | 0.012 | 0.92 | 0.0 | 0.06 | 10.16 | 0.01 | 2.053 | 3.70 | 0.00 | 2.7 | 97.3 | 0.0 | -1.16 | 0.81 | 0.91 | 7.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37062 | 4084 | 12 | 0 | 20 | 4194 | 0 | logfile |
✘ | 7FiE | 31590 | 2023-05-15 | 2021-07-31 | 2.36 | 3.35 | — | 3.1 | 0.008 | 1.11 | 3.0 | 0.06 | 11.57 | 0.01 | 2.243 | 4.11 | 0.89 | 4.2 | 95.7 | 0.2 | -3.44 | 0.79 | 0.79 | 3.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36997 | 4674 | 13 | 0 | 28 | 0 | 0 | logfile |
✘ | 7FiD | 31589 | 2023-05-15 | 2021-07-31 | 2.44 | 3.37 | — | 3.1 | 0.010 | 1.10 | 0.0 | 0.06 | 11.25 | 0.01 | 2.165 | 3.92 | 0.36 | 5.7 | 94.1 | 0.2 | -3.56 | 0.79 | 0.79 | 3.22 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36992 | 4674 | 13 | 0 | 28 | 0 | 0 | logfile |
✘ | 6Q2R | 20578 | 2023-05-13 | 2019-08-08 | 4.3 | 4.92 | — | 4.6 | 0.004 | 0.82 | 0.0 | 0.05 | 8.43 | 0.01 | 1.384 | 4.86 | 0.00 | 5.4 | 94.6 | 0.0 | -3.85 | 0.68 | 0.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30392 | 3800 | 16 | 0 | 40 | 0 | 0 | logfile |
✘ | 7XSQ | 33431 | 2023-05-07 | 2022-05-15 | 2.88 | 2.17 | 2.83 | 2.1 | 0.009 | 0.93 | 3.0 | 0.06 | 17.11 | 0.01 | 2.157 | 2.60 | 2.74 | 6.1 | 93.8 | 0.1 | -2.88 | 0.77 | 0.75 | 2.31 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16573 | 1967 | 4 | 34 | 4 | 0 | 0 | logfile |
✘ | 5LKH | 4068 | 2023-05-15 | 2016-07-22 | 3.46 | 5.27 | — | 11.0 | 0.018 | 2.37 | 65.0 | 0.12 | 12.66 | 0.02 | 2.255 | 87.12 | 1.96 | 3.4 | 95.2 | 1.4 | -0.27 | 0.38 | 0.17 | -0.03 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37345 | 4740 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 7ZG7 | 14705 | 2023-05-15 | 2022-04-02 | 1.77 | 1.79 | 1.79 | 1.8 | 0.004 | 0.74 | 0.0 | 0.04 | 14.44 | 0.01 | 1.952 | 3.06 | 0.00 | 1.8 | 98.2 | 0.0 | 3.49 | 0.77 | 0.86 | 9.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 39086 | 4128 | 72 | 0 | 382 | 2680 | 0 | logfile |
✘ | 7oWG | 13097 | 2023-05-05 | 2021-06-18 | 4.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 114114 | 7078 | 8 | 0 | 110 | 0 | 57040 | logfile |
✘ | 7MBP | 23740 | 2023-05-13 | 2021-04-01 | 2.8 | 3.41 | — | 3.1 | 0.003 | 0.56 | 0.0 | 0.04 | 12.29 | 0.00 | 2.028 | 7.59 | 0.30 | 2.7 | 97.2 | 0.1 | 1.88 | 0.72 | 0.83 | 3.33 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30708 | 3984 | 8 | 0 | 12 | 0 | 0 | logfile |
✘ | 6oo4 | 20145 | 2023-05-08 | 2019-04-22 | 3.3 | 3.45 | 3.23 | 3.5 | 0.013 | 1.10 | 0.0 | 0.06 | 9.30 | 0.01 | 1.858 | 2.96 | 0.00 | 3.4 | 96.6 | 0.0 | -2.86 | 0.47 | 0.64 | 4.17 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18452 | 2440 | 8 | 0 | 4 | 0 | 0 | logfile |
✘ | 6V3H | 21037 | 2023-05-04 | 2019-11-25 | 3.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9926 | 1232 | 8 | 0 | 21 | 0 | 0 | logfile |