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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8F54 | 28860 | 2024-01-20 | 2022-11-11 | 2.5 | 2.67 | 2.56 | 2.7 | 0.003 | 0.45 | 0.0 | 0.03 | 11.59 | 0.00 | 2.491 | 0.57 | 0.00 | 0.0 | 100.0 | 0.0 | 3.06 | 0.68 | 0.76 | 3.44 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 66960 | 4020 | 60 | 0 | 0 | 0 | 33840 | logfile |
✘ | 7PMA | 13526 | 2024-01-19 | 2021-09-02 | 3.6 | 4.07 | 3.61 | 3.5 | 0.004 | 0.88 | 1.0 | 0.05 | 15.93 | 0.01 | 1.317 | 6.45 | 0.09 | 0.2 | 99.8 | 0.0 | -1.07 | 0.90 | 0.82 | 2.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10066 | 1249 | 6 | 0 | 5 | 0 | 0 | logfile |
✘ | 7PM8 | 13524 | 2024-01-19 | 2021-09-02 | 3.5 | 3.91 | 3.50 | 3.4 | 0.004 | 0.88 | 1.0 | 0.05 | 15.70 | 0.01 | 1.316 | 6.40 | 0.09 | 0.3 | 99.7 | 0.0 | -1.60 | 0.90 | 0.83 | 2.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10149 | 1260 | 6 | 0 | 5 | 0 | 0 | logfile |
✘ | 8iXL | 35795 | 2024-01-19 | 2023-04-01 | 3.5 | 3.61 | 3.45 | 3.6 | 0.012 | 1.48 | 0.0 | 0.10 | 11.65 | 0.00 | 2.568 | 2.07 | 0.00 | 0.4 | 99.6 | 0.0 | 2.40 | 0.71 | 0.84 | 1.08 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10970 | 1455 | 35 | 0 | 0 | 0 | 0 | logfile |
✘ | 7XoL | 33351 | 2024-01-17 | 2022-05-01 | 3.26 | 4.02 | 3.37 | 3.4 | 0.002 | 0.49 | 0.0 | 0.04 | 13.50 | 0.00 | 2.224 | 10.95 | 0.00 | 0.5 | 99.5 | 0.0 | 2.40 | 0.89 | 0.88 | 1.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 53970 | 7336 | 14 | 0 | 0 | 0 | 0 | logfile |
✘ | 6KNG | 0731 | 2024-01-18 | 2019-08-05 | 2.85 | 3.15 | — | 3.1 | 0.005 | 0.65 | 0.0 | 0.05 | 14.34 | 0.00 | 2.093 | 4.97 | 3.68 | 0.9 | 99.1 | 0.0 | -2.31 | 0.83 | 0.91 | 4.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7749 | 1002 | 6 | 0 | 6 | 0 | 0 | logfile |
✘ | 7YoX | 33989 | 2024-01-20 | 2022-08-02 | 3.95 | 4.33 | 4.09 | 4.1 | 0.006 | 1.31 | 8.0 | 0.10 | 27.06 | 0.01 | 0.786 | 33.58 | 46.70 | 1.0 | 98.8 | 0.2 | 2.84 | 0.82 | 0.70 | 0.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13878 | 1749 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 8H0Q | 34414 | 2024-01-18 | 2022-09-30 | 3.3 | 3.78 | 3.20 | 3.7 | 0.019 | 0.59 | 0.0 | 0.09 | 9.28 | 0.00 | 2.260 | 7.81 | 0.62 | 1.0 | 99.0 | 0.0 | -1.95 | 0.63 | 0.72 | 0.98 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8949 | 1134 | 7 | 0 | 3 | 0 | 0 | logfile |
✘ | 7JVA | 22497 | 2024-01-17 | 2020-08-20 | 3.6 | 3.93 | 3.68 | 3.9 | 0.016 | 1.51 | 0.0 | 0.09 | 13.10 | 0.01 | 2.398 | 0.80 | 0.30 | 1.0 | 98.8 | 0.2 | 0.87 | 0.84 | 0.81 | 3.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3248 | 420 | 4 | 0 | 3 | 0 | 0 | logfile |
✘ | 8BL2 | 16100 | 2024-01-18 | 2022-11-09 | 2.3 | 2.29 | 2.26 | 2.2 | 0.005 | 0.59 | 0.0 | 0.04 | 16.84 | 0.00 | 1.872 | 11.53 | 1.01 | 1.2 | 98.8 | 0.0 | 0.70 | 0.76 | 0.75 | 3.19 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 57128 | 7336 | 42 | 0 | 42 | 2780 | 0 | logfile |
✘ | 6VL5 | 21230 | 2024-01-20 | 2020-01-22 | 4.5 | 4.57 | 4.20 | 4.4 | 0.019 | 1.72 | 0.0 | 0.10 | 12.05 | 0.01 | 2.242 | 0.64 | 0.20 | 1.2 | 98.8 | 0.0 | 0.88 | 0.79 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15039 | 1719 | 42 | 0 | 105 | 0 | 0 | logfile |
✘ | 8H0P | 34413 | 2024-01-18 | 2022-09-30 | 3.15 | 2.98 | 3.14 | 3.2 | 0.001 | 0.40 | 0.0 | 0.04 | 7.54 | 0.00 | 2.208 | 5.68 | 0.10 | 1.2 | 98.8 | 0.0 | -2.49 | 0.52 | 0.65 | 1.60 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8932 | 1137 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 8CSW | 26973 | 2024-01-17 | 2022-05-13 | 2.5 | 2.22 | 2.46 | 2.3 | 0.007 | 0.86 | 0.0 | 0.06 | 14.46 | 0.01 | 2.219 | 5.03 | 2.33 | 1.2 | 98.8 | 0.0 | 0.83 | 0.64 | 0.88 | 6.02 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5332 | 657 | 1 | 0 | 0 | 165 | 0 | logfile |
✘ | 7ZPo | 14859 | 2024-01-20 | 2022-04-28 | 3.24 | 2.81 | 3.17 | 3.1 | 0.004 | 0.73 | 0.0 | 0.05 | 16.16 | 0.00 | 2.053 | 10.37 | 0.00 | 1.3 | 98.7 | 0.0 | 1.71 | 0.65 | 0.82 | 2.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15102 | 1932 | 20 | 0 | 16 | 0 | 0 | logfile |
✘ | 6VFi | 21173 | 2024-01-18 | 2020-01-05 | 4.54 | 4.63 | 4.96 | 4.5 | 0.018 | 1.47 | 0.0 | 0.09 | 10.93 | 0.01 | 2.449 | 0.53 | 0.00 | 1.3 | 98.7 | 0.0 | 1.21 | 0.80 | 0.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 58488 | 7560 | 48 | 0 | 0 | 0 | 0 | logfile |
✘ | 8CST | 26970 | 2024-01-20 | 2022-05-13 | 2.85 | 2.57 | 2.87 | 2.7 | 0.005 | 0.67 | 0.0 | 0.39 | 19.05 | 0.01 | 1.938 | 2.58 | 0.00 | 1.4 | 98.6 | 0.0 | 1.18 | 0.69 | 0.78 | 3.45 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 66351 | 5810 | 39 | 889 | 41 | 0 | 0 | logfile |
✘ | 7Si6 | 25138 | 2024-01-20 | 2021-10-12 | 3.32 | 3.28 | — | 3.3 | 0.003 | 1.22 | 0.0 | 0.04 | 13.58 | 0.00 | 2.044 | 4.51 | 0.00 | 1.4 | 98.6 | 0.0 | 2.88 | 0.46 | 0.77 | 1.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13515 | 873 | 1 | 0 | 2 | 0 | 6910 | logfile |
✘ | 7SY0 | 25512 | 2024-01-17 | 2021-11-24 | 3.0 | 3.75 | — | 3.5 | 0.005 | 0.84 | 0.0 | 0.06 | 13.35 | 0.01 | 2.295 | 2.42 | 0.00 | 1.4 | 98.6 | 0.0 | -0.49 | 0.80 | 0.83 | 3.46 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6553 | 797 | 4 | 0 | 7 | 0 | 0 | logfile |
✘ | 7Si3 | 25137 | 2024-01-20 | 2021-10-12 | 3.19 | 3.21 | — | 3.2 | 0.003 | 1.19 | 0.0 | 0.04 | 13.00 | 0.00 | 2.038 | 2.15 | 0.00 | 1.5 | 98.5 | 0.0 | 3.72 | 0.48 | 0.77 | 1.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13500 | 873 | 1 | 0 | 2 | 0 | 6901 | logfile |
✘ | 7WVW | 32860 | 2024-01-18 | 2022-02-11 | 3.1 | 3.26 | — | 3.2 | 0.002 | 0.50 | 0.0 | 0.04 | 13.51 | 0.00 | 2.197 | 9.35 | 0.00 | 1.5 | 98.5 | 0.0 | 0.78 | 0.62 | 0.77 | 2.19 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7169 | 924 | 5 | 0 | 0 | 0 | 0 | logfile |