Table showing results for October 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8F0A	28754	2023-10-09	2022-11-02	2.6	3.77	2.61	3.4	0.031	1.77	0.0	0.13	9.86	0.01	2.388	0.56	0.00	0.8	99.2	0.0	0.72	0.68	0.66	4.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18060	1212	9	0	0	0	9189	logfile
✘	6KNG	0731	2023-10-03	2019-08-05	2.85	3.15	—	3.1	0.005	0.65	0.0	0.05	14.34	0.00	2.093	4.97	3.68	0.9	99.1	0.0	-2.31	0.83	0.91	4.61	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7749	1002	6	0	6	0	0	logfile
✘	6VL6	21231	2023-10-10	2020-01-22	4.6	5.00	4.54	4.6	0.019	1.46	0.0	0.09	11.38	0.01	2.431	0.59	0.00	0.9	99.1	0.0	0.45	0.87	0.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21504	2640	24	0	0	0	0	logfile
✘	7Fii	31598	2023-10-05	2021-07-31	4.3	4.37	—	4.1	0.002	0.36	0.0	0.04	8.97	0.00	2.073	1.66	0.00	0.9	99.1	0.0	3.08	0.64	0.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8765	1522	6	0	0	0	0	logfile
✘	6VWK	21419	2023-10-04	2020-02-20	3.3	3.56	—	3.5	0.010	1.30	4.0	0.07	12.71	0.01	2.355	0.98	0.59	0.9	99.1	0.0	-0.35	0.65	0.83	2.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8423	1133	13	0	0	0	0	logfile
✘	8H0Q	34414	2023-10-04	2022-09-30	3.3	3.78	3.20	3.7	0.019	0.59	0.0	0.09	7.89	0.00	2.260	7.81	0.62	1.0	99.0	0.0	-1.95	0.63	0.72	0.98	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8949	1134	7	0	3	0	0	logfile
✘	7UNL	26626	2023-10-05	2022-04-11	2.45	3.35	2.50	3.1	0.003	0.56	0.0	0.04	14.66	0.00	2.143	2.41	1.94	1.1	98.9	0.0	2.30	0.72	0.83	3.52	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11724	734	6	0	8	120	5900	logfile
✘	7N5D	24186	2023-10-10	2021-06-05	2.8	2.25	—	1.3	0.023	1.52	0.0	0.09	9.91	0.01	2.378	0.32	0.00	1.1	98.9	0.0	1.83	0.84	0.83	4.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20593	2612	14	0	7	0	0	logfile
✘	7NAP	24277	2023-10-10	2021-06-22	3.2	3.90	—	3.6	0.005	0.74	0.0	0.05	13.06	0.01	2.090	2.71	0.00	1.2	98.7	0.1	1.23	0.86	0.84	2.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	69762	9240	42	0	0	0	0	logfile
✘	7L8G	23233	2023-10-08	2020-12-31	4.3	4.35	4.01	4.1	0.022	1.76	0.0	0.16	10.27	0.02	2.354	1.35	0.00	1.2	98.8	0.0	0.64	0.79	0.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15802	1695	39	0	307	0	0	logfile
✘	6VL5	21230	2023-10-07	2020-01-22	4.5	4.57	4.20	4.4	0.019	1.72	0.0	0.10	10.23	0.01	2.242	0.64	0.20	1.2	98.8	0.0	0.88	0.79	0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15039	1719	42	0	105	0	0	logfile
✘	7SXY	25510	2023-10-03	2021-11-24	2.79	3.53	—	3.2	0.005	0.84	0.0	0.06	13.35	0.01	2.303	2.81	0.00	1.3	98.7	0.0	-0.48	0.82	0.87	3.37	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6557	797	4	0	7	0	0	logfile
✘	8oTT	17184	2023-10-06	2023-04-21	3.3	3.86	3.31	3.4	0.005	0.77	0.0	0.05	24.44	0.01	2.513	1.15	0.16	1.3	98.7	0.0	1.04	0.89	0.82	2.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12973	859	17	288	8	0	0	logfile
✘	8DR6	27672	2023-10-20	2022-07-20	2.39	3.20	2.47	3.0	0.002	0.52	0.0	0.04	17.75	0.00	1.996	3.30	0.95	1.3	98.7	0.0	2.01	0.85	0.85	3.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	43630	2608	20	63	9	12	21632	logfile
✘	8EFQ	28088	2023-10-03	2022-09-08	3.3	3.58	3.24	3.6	0.004	0.81	0.0	0.05	8.64	0.01	2.298	3.12	0.00	1.4	98.6	0.0	-1.52	0.60	0.72	1.55	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7046	892	6	0	2	0	0	logfile
✘	8DR1	27668	2023-10-20	2022-07-20	2.14	2.91	2.21	2.7	0.008	0.57	0.0	0.04	17.93	0.00	1.946	2.66	0.74	1.4	98.6	0.0	1.79	0.80	0.77	4.33	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	43630	2608	21	64	8	12	21631	logfile
✘	7XL4	33272	2023-10-12	2022-04-21	3.86	3.92	—	3.8	0.001	0.36	0.0	0.04	9.42	0.00	2.274	4.13	0.00	1.4	98.6	0.0	-4.82	0.78	0.75	1.26	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24560	3479	8	0	3	0	0	logfile
✘	7VF9	31948	2023-10-12	2021-09-10	4.04	4.13	—	4.1	0.001	0.38	0.0	0.04	9.65	0.00	2.176	3.71	0.05	1.5	98.5	0.0	-4.44	0.74	0.74	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24247	3425	7	0	3	0	0	logfile
✘	7oTo	13063	2023-10-05	2021-06-10	3.4	2.27	—	1.3	0.013	1.84	0.0	0.11	15.17	0.01	1.799	3.86	0.00	1.5	98.5	0.0	2.59	0.76	0.74	1.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10333	1313	4	0	4	0	0	logfile
✘	7VAV	31866	2023-10-14	2021-08-30	2.8	2.66	3.31	3.2	0.002	0.49	0.0	0.04	13.26	0.00	2.035	3.96	0.00	1.5	98.5	0.0	1.80	0.63	0.80	2.95	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29520	3787	14	0	4	0	0	logfile

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