Table showing results for May 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6VFH	21172	2023-05-15	2020-01-05	3.86	3.96	3.81	3.9	0.019	1.39	0.0	0.08	9.31	0.01	2.497	0.82	0.00	0.8	99.2	0.0	2.06	0.75	0.80	1.89	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	36984	4752	24	0	0	0	0	logfile
✘	8F0A	28754	2023-05-07	2022-11-02	2.6	3.77	2.61	3.4	0.031	1.77	0.0	0.13	9.86	0.01	2.388	0.56	0.00	0.8	99.2	0.0	0.72	0.68	0.66	4.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18060	1212	9	0	0	0	9189	logfile
✘	7Fii	31598	2023-05-04	2021-07-31	4.3	4.37	—	4.1	0.002	0.36	0.0	0.04	8.97	0.00	2.073	1.66	0.00	0.9	99.1	0.0	3.08	0.64	0.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8765	1522	6	0	0	0	0	logfile
✘	6KNG	0731	2023-05-03	2019-08-05	2.85	3.15	—	3.1	0.005	0.65	0.0	0.05	14.34	0.00	2.093	4.97	3.68	0.9	99.1	0.0	-2.31	0.83	0.91	4.61	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7749	1002	6	0	6	0	0	logfile
✘	6VL6	21231	2023-05-09	2020-01-22	4.6	5.00	4.54	4.6	0.019	1.46	0.0	0.09	11.38	0.01	2.431	0.59	0.00	0.9	99.1	0.0	0.45	0.87	0.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21504	2640	24	0	0	0	0	logfile
✘	6VWK	21419	2023-05-03	2020-02-20	3.3	3.56	—	3.5	0.010	1.30	4.0	0.07	12.71	0.01	2.355	0.98	0.59	0.9	99.1	0.0	-0.35	0.65	0.83	2.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8423	1133	13	0	0	0	0	logfile
✘	8CPM	16783	2023-05-15	2023-03-03	1.81	1.57	1.84	1.6	0.005	0.85	0.0	0.05	15.21	0.01	1.916	7.77	0.00	1.0	99.0	0.0	2.32	0.70	0.75	7.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	36090	4152	72	0	38	1972	0	logfile
✘	8CPS	16784	2023-05-15	2023-03-03	1.82	1.69	1.90	1.7	0.003	0.66	0.0	0.05	15.42	0.01	2.116	2.82	0.00	1.0	99.0	0.0	2.28	0.75	0.81	8.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	36034	4152	72	0	38	1916	0	logfile
✘	7TT3	26109	2023-05-08	2022-01-31	4.3	4.47	—	4.4	0.006	0.99	0.0	0.05	10.46	0.01	2.059	4.09	0.00	1.1	98.9	0.0	1.09	0.73	0.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20524	1338	6	0	0	0	10060	logfile
✘	7UNL	26626	2023-05-05	2022-04-11	2.45	3.35	2.50	3.1	0.003	0.56	0.0	0.04	14.66	0.00	2.143	2.41	1.94	1.1	98.9	0.0	2.30	0.72	0.83	3.52	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11724	734	6	0	8	120	5900	logfile
✘	6VL5	21230	2023-05-06	2020-01-22	4.5	4.57	4.20	4.4	0.019	1.72	0.0	0.10	10.23	0.01	2.242	0.64	0.20	1.2	98.8	0.0	0.88	0.79	0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15039	1719	42	0	105	0	0	logfile
✘	7L8G	23233	2023-05-07	2020-12-31	4.3	4.35	4.01	4.1	0.022	1.76	0.0	0.16	10.27	0.02	2.354	1.35	0.00	1.2	98.8	0.0	0.64	0.79	0.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15802	1695	39	0	307	0	0	logfile
✘	6VFK	21185	2023-05-15	2020-01-05	4.25	4.39	4.20	4.3	0.021	1.41	0.0	0.09	10.30	0.01	2.389	0.73	0.00	1.3	98.7	0.0	2.59	0.84	0.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	37032	4764	24	0	0	0	0	logfile
✘	7SXY	25510	2023-05-03	2021-11-24	2.79	3.53	—	3.2	0.005	0.84	0.0	0.06	13.35	0.01	2.303	2.81	0.00	1.3	98.7	0.0	-0.48	0.82	0.87	3.37	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6557	797	4	0	7	0	0	logfile
✘	7TU5	26126	2023-05-15	2022-02-02	2.1	1.97	2.06	1.8	0.009	0.85	6.0	0.06	15.88	0.01	1.910	4.33	1.54	1.4	98.6	0.0	0.64	0.84	0.82	4.27	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19656	2574	18	0	6	6	0	logfile
✘	7UV9	26809	2023-05-06	2022-04-29	3.2	2.64	3.07	3.0	0.009	0.89	0.0	0.06	26.20	0.01	1.561	5.75	0.30	1.4	98.6	0.0	1.22	0.77	0.75	1.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15342	1164	11	292	2	0	0	logfile
✘	8EFQ	28088	2023-05-03	2022-09-08	3.3	3.58	3.24	3.6	0.004	0.81	0.0	0.05	8.64	0.01	2.298	3.12	0.00	1.4	98.6	0.0	-1.52	0.60	0.72	1.55	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7046	892	6	0	2	0	0	logfile
✘	7K5Y	22684	2023-05-08	2020-09-17	2.76	3.18	—	3.1	0.004	0.65	0.0	0.04	27.13	0.00	2.108	7.00	0.00	1.4	98.6	0.0	1.74	0.77	0.81	4.49	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18258	1297	13	394	0	0	0	logfile
✘	7XL4	33272	2023-05-10	2022-04-21	3.86	3.92	—	3.8	0.001	0.36	0.0	0.04	9.42	0.00	2.274	4.13	0.00	1.4	98.6	0.0	-4.82	0.78	0.75	1.26	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24560	3479	8	0	3	0	0	logfile
✘	7VAV	31866	2023-05-12	2021-08-30	2.8	2.66	3.31	3.2	0.002	0.49	0.0	0.04	13.26	0.00	2.035	3.96	0.00	1.5	98.5	0.0	1.80	0.63	0.80	2.95	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29520	3787	14	0	4	0	0	logfile

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