Table showing results for March 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7T4K	25678	2023-03-12	2021-12-10	3.25	3.56	3.27	3.4	0.005	0.88	0.0	0.05	12.76	0.01	2.287	3.74	0.15	2.3	97.7	0.0	0.51	0.73	0.84	2.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6180	782	2	0	0	0	0	logfile
✘	7ZES	14692	2023-03-15	2022-03-31	3.1	3.32	3.11	3.4	0.005	0.61	0.0	0.04	13.69	0.01	1.966	5.90	0.00	2.3	97.7	0.0	0.35	0.75	0.82	3.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13538	1654	6	10	4	0	0	logfile
✘	7DoK	30795	2023-03-14	2020-12-14	2.73	2.84	—	2.9	0.009	1.01	0.0	0.07	13.35	0.01	1.695	5.72	0.60	2.4	97.6	0.0	-2.40	0.71	0.85	3.23	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11534	1323	8	44	9	2	0	logfile
✘	7DW9	30877	2023-03-13	2021-01-15	2.6	3.41	—	3.1	0.006	0.77	0.0	0.10	12.06	0.01	2.306	1.39	0.09	2.4	97.6	0.0	-0.01	0.73	0.87	4.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10105	1283	8	0	4	0	0	logfile
✘	6XKJ	22219	2023-03-14	2020-06-26	3.54	3.39	—	3.4	0.009	0.83	0.0	0.05	14.92	0.00	2.246	12.86	0.00	2.4	97.6	0.0	0.54	0.62	0.85	1.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11056	1360	16	0	0	0	0	logfile
✘	6PM5	20388	2023-03-15	2019-07-01	3.1	3.38	—	3.4	0.002	0.49	0.0	0.06	6.82	0.00	2.275	4.99	0.00	2.4	97.6	0.0	-4.42	0.52	0.78	3.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13975	1735	15	0	15	0	0	logfile
✘	7BoJ	30130	2023-03-16	2020-03-19	2.5	2.54	2.42	2.5	0.007	0.92	0.0	0.06	12.86	0.01	2.271	3.35	0.00	2.4	97.6	0.0	-2.48	0.77	0.86	4.26	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	121500	15900	60	0	0	0	0	logfile
✘	7QTL	14144	2023-03-16	2022-01-14	2.48	2.85	2.48	2.5	0.007	0.66	0.0	0.04	17.25	0.01	1.988	8.61	3.98	2.4	97.6	0.0	-1.53	0.89	0.86	4.27	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18397	2152	14	44	4	120	0	logfile
✘	5oAF	3773	2023-03-17	2017-06-21	4.06	4.15	—	4.1	0.001	0.47	0.0	0.04	9.13	0.00	2.165	12.39	0.28	2.4	97.6	0.0	-2.75	0.69	0.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19748	2538	12	0	6	0	0	logfile
✘	8G08	29649	2023-03-17	2023-01-31	2.8	3.66	2.85	3.1	0.005	0.68	0.0	0.23	5.00	0.00	1.824	0.59	0.00	2.4	97.6	0.0	1.01	0.74	0.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19595	4859	26	0	10	0	0	logfile
✘	6X2L	22011	2023-03-13	2020-05-20	2.85	2.95	—	2.9	0.009	0.96	0.0	0.06	13.68	0.01	2.078	2.99	0.00	2.5	97.5	0.0	-6.46	0.64	0.88	2.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9396	1233	3	0	0	0	0	logfile
✘	6X68	22073	2023-03-13	2020-05-27	3.66	3.88	—	3.8	0.012	1.74	10.0	0.09	20.68	0.01	1.652	4.17	0.57	2.5	97.2	0.3	-0.38	0.72	0.77	1.47	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10246	956	7	124	8	0	0	logfile
✘	7JR7	22443	2023-03-16	2020-08-11	3.3	3.18	—	3.3	0.010	1.34	4.0	0.08	11.83	0.01	2.254	3.49	0.57	2.6	97.0	0.4	0.62	0.65	0.79	2.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15799	2020	6	0	0	0	0	logfile
✘	7PKN	13473	2023-03-17	2021-08-25	3.2	3.78	—	3.4	0.002	0.55	0.0	0.04	12.63	0.00	2.106	6.10	0.00	2.6	97.4	0.0	2.14	0.77	0.75	1.23	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18616	2310	12	0	0	1	0	logfile
✘	7oLA	12975	2023-03-17	2021-05-19	3.3	3.85	3.21	3.3	0.004	0.59	0.0	0.04	15.07	0.00	2.023	7.61	0.00	2.7	97.3	0.0	1.22	0.88	0.85	2.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19719	2394	10	0	7	0	0	logfile
✘	7WSF	32756	2023-03-15	2022-01-29	2.87	3.08	—	3.1	0.003	0.44	0.0	0.04	11.23	0.00	2.016	6.14	3.87	2.7	97.3	0.0	-0.12	0.72	0.81	4.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7170	879	3	0	1	0	0	logfile
✘	8HJ9	34835	2023-03-12	2022-11-22	3.12	3.29	3.00	3.2	0.004	0.65	0.0	0.04	15.54	0.00	2.234	10.94	0.00	2.7	97.3	0.0	1.80	0.43	0.76	3.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3274	416	1	0	1	0	0	logfile
✘	6PPL	20442	2023-03-12	2019-07-08	3.02	3.14	—	3.1	0.010	0.99	0.0	0.25	14.17	0.01	1.917	3.20	0.23	2.7	97.3	0.0	-6.00	0.74	0.86	4.10	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8155	980	6	0	4	0	0	logfile
✘	7P14	13155	2023-03-12	2021-07-01	3.66	3.82	3.50	3.8	0.004	0.64	0.0	0.04	16.56	0.00	2.295	7.45	0.00	2.7	97.3	0.0	1.11	0.60	0.78	2.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3796	454	3	0	3	0	0	logfile
✘	6PW6	20500	2023-03-16	2019-07-22	4.5	4.56	4.36	4.5	0.022	1.83	0.0	0.11	10.81	0.01	2.200	1.61	0.56	2.7	97.2	0.2	0.50	0.74	0.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15942	1842	45	0	108	0	0	logfile

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