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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6PUZ | 20485 | 2024-01-19 | 2019-07-18 | 2.8 | 3.10 | 2.87 | 3.1 | 0.008 | 0.86 | 0.0 | 0.05 | 19.79 | 0.01 | 0.000 | 5.85 | 0.19 | 2.2 | 97.8 | 0.0 | -2.67 | 0.74 | 0.89 | 4.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11702 | 1230 | 28 | 72 | 10 | 340 | 0 | logfile |
✘ | 8H87 | 34531 | 2024-01-18 | 2022-10-21 | 2.53 | 2.73 | 2.50 | 2.7 | 0.011 | 1.55 | 0.0 | 0.08 | 18.83 | 0.02 | 2.300 | 4.49 | 0.91 | 2.3 | 97.7 | 0.0 | -1.32 | 0.58 | 0.79 | 4.94 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7083 | 777 | 6 | 0 | 48 | 147 | 0 | logfile |
✘ | 8PoG | 17791 | 2024-01-17 | 2023-07-04 | 4.15 | 4.36 | 4.10 | 4.3 | 0.003 | 0.59 | 0.0 | 0.04 | 15.83 | 0.01 | 2.242 | 5.44 | 0.00 | 2.3 | 97.7 | 0.0 | 0.40 | 0.77 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4964 | 624 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 8ERC | 28552 | 2024-01-17 | 2022-10-11 | 3.7 | 3.47 | 3.08 | 3.7 | 0.003 | 0.67 | 0.0 | 0.04 | 12.91 | 0.00 | 2.115 | 8.25 | 0.00 | 2.3 | 97.7 | 0.0 | 1.99 | 0.51 | 0.65 | 1.22 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3510 | 441 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 7KJX | 22901 | 2024-01-18 | 2020-10-26 | 3.1 | 3.33 | — | 3.3 | 0.005 | 0.69 | 0.0 | 0.04 | 16.90 | 0.01 | 2.100 | 5.38 | 0.12 | 2.3 | 97.7 | 0.0 | 0.94 | 0.71 | 0.81 | 2.85 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8589 | 948 | 5 | 44 | 2 | 0 | 0 | logfile |
✘ | 7oUG | 13076 | 2024-01-20 | 2021-06-11 | 3.1 | 2.33 | 3.12 | 1.7 | 0.004 | 0.74 | 0.0 | 0.04 | 17.65 | 0.01 | 1.769 | 5.66 | 0.14 | 2.4 | 97.6 | 0.0 | 0.28 | 0.78 | 0.75 | 2.41 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15090 | 1664 | 16 | 80 | 10 | 8 | 0 | logfile |
✘ | 6XKJ | 22219 | 2024-01-19 | 2020-06-26 | 3.54 | 3.39 | — | 3.4 | 0.009 | 0.83 | 0.0 | 0.05 | 14.92 | 0.00 | 2.246 | 12.86 | 0.00 | 2.4 | 97.6 | 0.0 | 0.54 | 0.62 | 0.85 | 1.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11056 | 1360 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 6N1i | 8903 | 2024-01-19 | 2018-11-08 | 3.58 | 3.63 | — | 3.6 | 0.009 | 1.13 | 0.0 | 0.06 | 9.87 | 0.01 | 1.147 | 27.10 | 0.00 | 2.4 | 97.6 | 0.0 | -6.04 | 0.42 | 0.58 | 0.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11136 | 1360 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 7UoP | 26652 | 2024-01-20 | 2022-04-13 | 2.8 | 3.24 | 2.81 | 3.1 | 0.004 | 0.59 | 0.0 | 0.05 | 12.28 | 0.00 | 2.126 | 2.36 | 1.02 | 2.4 | 97.6 | 0.0 | 0.45 | 0.81 | 0.83 | 3.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15702 | 2010 | 12 | 0 | 12 | 0 | 0 | logfile |
✘ | 6PM5 | 20388 | 2024-01-20 | 2019-07-01 | 3.1 | 3.38 | — | 3.4 | 0.002 | 0.49 | 0.0 | 0.06 | 11.10 | 0.00 | 2.275 | 4.99 | 0.00 | 2.4 | 97.6 | 0.0 | -4.42 | 0.52 | 0.78 | 3.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13975 | 1735 | 15 | 0 | 15 | 0 | 0 | logfile |
✘ | 8BPB | 16148 | 2024-01-18 | 2022-11-16 | 2.8 | 2.48 | 3.00 | 2.8 | 0.004 | 0.61 | 0.0 | 0.04 | 17.77 | 0.00 | 1.755 | 8.92 | 2.96 | 2.5 | 97.5 | 0.0 | 0.64 | 0.74 | 0.80 | 2.51 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8384 | 1030 | 7 | 0 | 6 | 12 | 0 | logfile |
✘ | 8DMB | 27533 | 2024-01-20 | 2022-07-08 | 3.1 | 3.10 | 3.12 | 3.1 | 0.005 | 0.91 | 0.0 | 0.05 | 22.76 | 0.01 | 2.091 | 0.28 | 0.74 | 2.5 | 97.5 | 0.0 | 0.39 | 0.69 | 0.81 | 4.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14225 | 328 | 5 | 275 | 2 | 0 | 5728 | logfile |
✘ | 8JYP | 36729 | 2024-01-19 | 2023-07-03 | 3.38 | 4.15 | 3.49 | 3.8 | 0.003 | 0.62 | 0.0 | 0.05 | 14.74 | 0.00 | 2.291 | 5.18 | 0.00 | 2.5 | 97.5 | 0.0 | 0.39 | 0.84 | 0.84 | 2.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6627 | 795 | 7 | 0 | 14 | 0 | 0 | logfile |
✘ | 7YFC | 33785 | 2024-01-19 | 2022-07-08 | 3.0 | 3.40 | 3.05 | 3.4 | 0.005 | 0.66 | 0.0 | 0.04 | 18.01 | 0.00 | 2.198 | 5.98 | 0.09 | 2.5 | 97.5 | 0.0 | 1.05 | 0.65 | 0.82 | 3.01 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9882 | 1262 | 7 | 0 | 2 | 0 | 0 | logfile |
✘ | 8FU6 | 29453 | 2024-01-18 | 2023-01-16 | 2.9 | 3.13 | 2.94 | 3.2 | 0.002 | 0.60 | 0.0 | 0.04 | 12.46 | 0.00 | 2.199 | 3.83 | 0.00 | 2.6 | 97.4 | 0.0 | 0.07 | 0.58 | 0.80 | 3.34 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8834 | 1112 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 7WPo | 32686 | 2024-01-17 | 2022-01-24 | 3.5 | 3.78 | — | 3.7 | 0.014 | 1.64 | 6.0 | 0.11 | 11.46 | 0.01 | 2.359 | 5.22 | 0.48 | 2.6 | 97.3 | 0.1 | -0.13 | 0.70 | 0.79 | 3.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6829 | 867 | 8 | 0 | 17 | 0 | 0 | logfile |
✘ | 6SAG | 10130 | 2024-01-17 | 2019-07-16 | 2.0 | 2.11 | 2.01 | 2.1 | 0.004 | 0.65 | 0.0 | 0.04 | 13.90 | 0.00 | 0.351 | 2.79 | 0.00 | 2.6 | 97.4 | 0.0 | -0.33 | 0.58 | 0.86 | 6.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 54080 | 6120 | 240 | 120 | 240 | 2840 | 0 | logfile |
✘ | 8PKD | 17735 | 2024-01-17 | 2023-06-26 | 2.33 | 2.42 | 2.31 | 2.4 | 0.003 | 0.44 | 0.0 | 0.04 | 15.00 | 0.00 | 2.246 | 3.95 | 0.00 | 2.7 | 97.3 | 0.0 | 1.55 | 0.65 | 0.81 | 4.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4844 | 600 | 8 | 0 | 0 | 16 | 0 | logfile |
✘ | 6CT0 | 7610 | 2024-01-17 | 2018-03-21 | 3.1 | 3.17 | — | 3.2 | 0.010 | 1.57 | 0.0 | 0.07 | 17.75 | 0.01 | 2.273 | 14.28 | 17.87 | 2.7 | 97.3 | 0.0 | -2.00 | 0.74 | 0.86 | 2.24 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 105600 | 13740 | 60 | 0 | 0 | 0 | 0 | logfile |
✘ | 6PW6 | 20500 | 2024-01-20 | 2019-07-22 | 4.5 | 4.56 | 4.36 | 4.5 | 0.022 | 1.83 | 0.0 | 0.11 | 13.68 | 0.01 | 2.200 | 1.61 | 0.56 | 2.7 | 97.2 | 0.2 | 0.50 | 0.74 | 0.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15942 | 1842 | 45 | 0 | 108 | 0 | 0 | logfile |