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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7T4K | 25678 | 2023-03-12 | 2021-12-10 | 3.25 | 3.56 | 3.27 | 3.4 | 0.005 | 0.88 | 0.0 | 0.05 | 12.76 | 0.01 | 2.287 | 3.74 | 0.15 | 2.3 | 97.7 | 0.0 | 0.51 | 0.73 | 0.84 | 2.59 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6180 | 782 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 7ZES | 14692 | 2023-03-15 | 2022-03-31 | 3.1 | 3.32 | 3.11 | 3.4 | 0.005 | 0.61 | 0.0 | 0.04 | 13.69 | 0.01 | 1.966 | 5.90 | 0.00 | 2.3 | 97.7 | 0.0 | 0.35 | 0.75 | 0.82 | 3.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13538 | 1654 | 6 | 10 | 4 | 0 | 0 | logfile |
✘ | 7DoK | 30795 | 2023-03-14 | 2020-12-14 | 2.73 | 2.84 | — | 2.9 | 0.009 | 1.01 | 0.0 | 0.07 | 13.35 | 0.01 | 1.695 | 5.72 | 0.60 | 2.4 | 97.6 | 0.0 | -2.40 | 0.71 | 0.85 | 3.23 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11534 | 1323 | 8 | 44 | 9 | 2 | 0 | logfile |
✘ | 7DW9 | 30877 | 2023-03-13 | 2021-01-15 | 2.6 | 3.41 | — | 3.1 | 0.006 | 0.77 | 0.0 | 0.10 | 12.06 | 0.01 | 2.306 | 1.39 | 0.09 | 2.4 | 97.6 | 0.0 | -0.01 | 0.73 | 0.87 | 4.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10105 | 1283 | 8 | 0 | 4 | 0 | 0 | logfile |
✘ | 6XKJ | 22219 | 2023-03-14 | 2020-06-26 | 3.54 | 3.39 | — | 3.4 | 0.009 | 0.83 | 0.0 | 0.05 | 14.92 | 0.00 | 2.246 | 12.86 | 0.00 | 2.4 | 97.6 | 0.0 | 0.54 | 0.62 | 0.85 | 1.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11056 | 1360 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 6PM5 | 20388 | 2023-03-15 | 2019-07-01 | 3.1 | 3.38 | — | 3.4 | 0.002 | 0.49 | 0.0 | 0.06 | 6.82 | 0.00 | 2.275 | 4.99 | 0.00 | 2.4 | 97.6 | 0.0 | -4.42 | 0.52 | 0.78 | 3.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13975 | 1735 | 15 | 0 | 15 | 0 | 0 | logfile |
✘ | 7BoJ | 30130 | 2023-03-16 | 2020-03-19 | 2.5 | 2.54 | 2.42 | 2.5 | 0.007 | 0.92 | 0.0 | 0.06 | 12.86 | 0.01 | 2.271 | 3.35 | 0.00 | 2.4 | 97.6 | 0.0 | -2.48 | 0.77 | 0.86 | 4.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 121500 | 15900 | 60 | 0 | 0 | 0 | 0 | logfile |
✘ | 7QTL | 14144 | 2023-03-16 | 2022-01-14 | 2.48 | 2.85 | 2.48 | 2.5 | 0.007 | 0.66 | 0.0 | 0.04 | 17.25 | 0.01 | 1.988 | 8.61 | 3.98 | 2.4 | 97.6 | 0.0 | -1.53 | 0.89 | 0.86 | 4.27 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18397 | 2152 | 14 | 44 | 4 | 120 | 0 | logfile |
✘ | 5oAF | 3773 | 2023-03-17 | 2017-06-21 | 4.06 | 4.15 | — | 4.1 | 0.001 | 0.47 | 0.0 | 0.04 | 9.13 | 0.00 | 2.165 | 12.39 | 0.28 | 2.4 | 97.6 | 0.0 | -2.75 | 0.69 | 0.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19748 | 2538 | 12 | 0 | 6 | 0 | 0 | logfile |
✘ | 8G08 | 29649 | 2023-03-17 | 2023-01-31 | 2.8 | 3.66 | 2.85 | 3.1 | 0.005 | 0.68 | 0.0 | 0.23 | 5.00 | 0.00 | 1.824 | 0.59 | 0.00 | 2.4 | 97.6 | 0.0 | 1.01 | 0.74 | 0.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19595 | 4859 | 26 | 0 | 10 | 0 | 0 | logfile |
✘ | 6X2L | 22011 | 2023-03-13 | 2020-05-20 | 2.85 | 2.95 | — | 2.9 | 0.009 | 0.96 | 0.0 | 0.06 | 13.68 | 0.01 | 2.078 | 2.99 | 0.00 | 2.5 | 97.5 | 0.0 | -6.46 | 0.64 | 0.88 | 2.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9396 | 1233 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 6X68 | 22073 | 2023-03-13 | 2020-05-27 | 3.66 | 3.88 | — | 3.8 | 0.012 | 1.74 | 10.0 | 0.09 | 20.68 | 0.01 | 1.652 | 4.17 | 0.57 | 2.5 | 97.2 | 0.3 | -0.38 | 0.72 | 0.77 | 1.47 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10246 | 956 | 7 | 124 | 8 | 0 | 0 | logfile |
✘ | 7JR7 | 22443 | 2023-03-16 | 2020-08-11 | 3.3 | 3.18 | — | 3.3 | 0.010 | 1.34 | 4.0 | 0.08 | 11.83 | 0.01 | 2.254 | 3.49 | 0.57 | 2.6 | 97.0 | 0.4 | 0.62 | 0.65 | 0.79 | 2.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15799 | 2020 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 7PKN | 13473 | 2023-03-17 | 2021-08-25 | 3.2 | 3.78 | — | 3.4 | 0.002 | 0.55 | 0.0 | 0.04 | 12.63 | 0.00 | 2.106 | 6.10 | 0.00 | 2.6 | 97.4 | 0.0 | 2.14 | 0.77 | 0.75 | 1.23 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18616 | 2310 | 12 | 0 | 0 | 1 | 0 | logfile |
✘ | 7oLA | 12975 | 2023-03-17 | 2021-05-19 | 3.3 | 3.85 | 3.21 | 3.3 | 0.004 | 0.59 | 0.0 | 0.04 | 15.07 | 0.00 | 2.023 | 7.61 | 0.00 | 2.7 | 97.3 | 0.0 | 1.22 | 0.88 | 0.85 | 2.96 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19719 | 2394 | 10 | 0 | 7 | 0 | 0 | logfile |
✘ | 7WSF | 32756 | 2023-03-15 | 2022-01-29 | 2.87 | 3.08 | — | 3.1 | 0.003 | 0.44 | 0.0 | 0.04 | 11.23 | 0.00 | 2.016 | 6.14 | 3.87 | 2.7 | 97.3 | 0.0 | -0.12 | 0.72 | 0.81 | 4.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7170 | 879 | 3 | 0 | 1 | 0 | 0 | logfile |
✘ | 8HJ9 | 34835 | 2023-03-12 | 2022-11-22 | 3.12 | 3.29 | 3.00 | 3.2 | 0.004 | 0.65 | 0.0 | 0.04 | 15.54 | 0.00 | 2.234 | 10.94 | 0.00 | 2.7 | 97.3 | 0.0 | 1.80 | 0.43 | 0.76 | 3.45 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3274 | 416 | 1 | 0 | 1 | 0 | 0 | logfile |
✘ | 6PPL | 20442 | 2023-03-12 | 2019-07-08 | 3.02 | 3.14 | — | 3.1 | 0.010 | 0.99 | 0.0 | 0.25 | 14.17 | 0.01 | 1.917 | 3.20 | 0.23 | 2.7 | 97.3 | 0.0 | -6.00 | 0.74 | 0.86 | 4.10 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8155 | 980 | 6 | 0 | 4 | 0 | 0 | logfile |
✘ | 7P14 | 13155 | 2023-03-12 | 2021-07-01 | 3.66 | 3.82 | 3.50 | 3.8 | 0.004 | 0.64 | 0.0 | 0.04 | 16.56 | 0.00 | 2.295 | 7.45 | 0.00 | 2.7 | 97.3 | 0.0 | 1.11 | 0.60 | 0.78 | 2.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3796 | 454 | 3 | 0 | 3 | 0 | 0 | logfile |
✘ | 6PW6 | 20500 | 2023-03-16 | 2019-07-22 | 4.5 | 4.56 | 4.36 | 4.5 | 0.022 | 1.83 | 0.0 | 0.11 | 10.81 | 0.01 | 2.200 | 1.61 | 0.56 | 2.7 | 97.2 | 0.2 | 0.50 | 0.74 | 0.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15942 | 1842 | 45 | 0 | 108 | 0 | 0 | logfile |