Table showing results for May 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8DLW	27518	2023-05-12	2022-07-08	2.16	3.12	2.26	2.6	0.007	1.05	0.0	0.06	11.12	0.01	2.290	1.95	0.19	2.3	97.7	0.1	0.82	0.87	0.86	4.36	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30267	3768	33	0	78	0	0	logfile
✘	7T4K	25678	2023-05-03	2021-12-10	3.25	3.56	3.27	3.4	0.005	0.88	0.0	0.05	12.76	0.01	2.287	3.74	0.15	2.3	97.7	0.0	0.51	0.73	0.84	2.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6180	782	2	0	0	0	0	logfile
✘	6CRQ	7568	2023-05-08	2018-03-19	4.2	3.69	4.20	4.1	0.015	1.50	1.0	0.09	11.52	0.01	1.839	7.27	1.06	2.3	97.7	0.0	1.77	0.68	0.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20271	2391	54	0	105	0	0	logfile
✘	7JM6	22386	2023-05-09	2020-07-31	2.92	2.96	—	2.9	0.005	0.79	0.0	0.18	13.28	0.00	1.907	6.01	0.72	2.3	97.7	0.0	1.30	0.58	0.81	3.97	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21084	1334	6	0	12	72	10504	logfile
✘	8F1K	28791	2023-05-13	2022-11-05	2.8	3.72	2.83	3.2	0.002	0.47	0.0	0.04	14.90	0.00	2.130	4.40	1.30	2.3	97.7	0.0	0.58	0.88	0.82	2.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30854	3689	14	95	3	10	0	logfile
✘	7D61	30587	2023-05-11	2020-09-28	2.8	2.98	—	3.0	0.003	0.77	0.0	0.04	16.22	0.01	2.340	1.83	0.00	2.4	97.6	0.0	-7.13	0.69	0.82	2.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	26664	3168	22	0	55	0	0	logfile
✘	7P7J	13237	2023-05-15	2021-07-19	2.7	2.61	—	2.3	0.005	0.77	0.0	1.47	14.69	0.01	2.212	4.92	1.25	2.4	97.5	0.0	-0.28	0.91	0.90	3.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	37448	4719	24	0	28	0	0	logfile
✘	7P7M	13240	2023-05-15	2021-07-19	3.2	3.30	—	3.0	0.005	0.87	0.0	1.47	14.33	0.01	2.214	5.31	0.39	2.4	97.6	0.0	-0.55	0.91	0.87	2.27	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	37390	4720	25	0	26	0	0	logfile
✘	6PM5	20388	2023-05-06	2019-07-01	3.1	3.38	—	3.4	0.002	0.49	0.0	0.06	6.82	0.00	2.275	4.99	0.00	2.4	97.6	0.0	-4.42	0.52	0.78	3.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13975	1735	15	0	15	0	0	logfile
✘	7DoK	30795	2023-05-05	2020-12-14	2.73	2.84	—	2.9	0.009	1.01	0.0	0.07	13.35	0.01	1.695	5.72	0.60	2.4	97.6	0.0	-2.40	0.71	0.85	3.23	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11534	1323	8	44	9	2	0	logfile
✘	7DW9	30877	2023-05-04	2021-01-15	2.6	3.41	—	3.1	0.006	0.77	0.0	0.10	12.06	0.01	2.306	1.39	0.09	2.4	97.6	0.0	-0.01	0.73	0.87	4.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10105	1283	8	0	4	0	0	logfile
✘	6VoY	21301	2023-05-07	2020-02-01	3.7	4.09	—	4.0	0.013	1.52	30.0	0.10	24.39	0.01	1.583	35.03	0.46	2.4	97.6	0.0	-6.32	0.69	0.82	2.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17556	1724	16	180	6	0	0	logfile
✘	6R93	4767	2023-05-09	2019-04-02	4.0	4.29	—	4.1	0.010	1.48	2.0	0.10	28.72	0.01	1.600	2.04	0.00	2.5	97.0	0.5	0.30	0.78	0.73	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22961	775	10	290	0	0	10123	logfile
✘	6X2L	22011	2023-05-04	2020-05-20	2.85	2.95	—	2.9	0.009	0.96	0.0	0.06	13.68	0.01	2.078	2.99	0.00	2.5	97.5	0.0	-6.46	0.64	0.88	2.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9396	1233	3	0	0	0	0	logfile
✘	6X68	22073	2023-05-04	2020-05-27	3.66	3.88	—	3.8	0.012	1.74	10.0	0.09	20.68	0.01	1.652	4.17	0.57	2.5	97.2	0.3	-0.38	0.72	0.77	1.47	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10246	956	7	124	8	0	0	logfile
✘	6MZU	9307	2023-05-13	2018-11-05	3.4	3.56	—	3.5	0.006	0.72	0.0	0.05	8.11	0.01	2.309	6.63	0.03	2.5	97.5	0.0	-4.73	0.78	0.85	4.19	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32833	4523	42	0	0	0	0	logfile
✘	7WS5	32744	2023-05-12	2022-01-28	3.7	4.15	—	3.9	0.003	0.61	0.0	0.05	13.21	0.00	2.168	9.14	0.09	2.5	97.5	0.1	-0.07	0.83	0.84	1.95	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30228	3800	26	0	38	0	0	logfile
✘	7TF7	25864	2023-05-16	2022-01-06	2.13	2.24	—	2.2	0.004	0.61	0.0	0.04	15.42	0.00	2.187	5.57	1.43	2.5	97.4	0.1	1.01	0.47	0.70	5.40	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	39976	4980	12	0	0	0	0	logfile
✘	6U59	20642	2023-05-08	2019-08-27	3.86	4.44	3.91	4.3	0.019	1.81	0.0	0.10	10.64	0.01	2.234	2.86	0.72	2.5	97.3	0.1	0.59	0.79	0.80	2.60	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20439	2412	57	0	117	0	0	logfile
✘	7ZMD	14795	2023-05-11	2022-04-19	2.93	3.18	2.97	3.2	0.002	0.52	0.0	0.08	13.13	0.01	2.146	3.80	0.00	2.5	97.5	0.0	0.93	0.68	0.78	3.52	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18400	1191	2	0	0	0	9106	logfile

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