Table showing results for May 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6N57	0348	2023-05-12	2018-11-21	3.7	3.83	—	3.8	0.012	1.14	3.0	0.06	10.41	0.01	1.366	39.05	0.37	15.4	84.0	0.6	-4.55	0.75	0.82	2.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30233	3841	11	0	8	0	0	logfile
✘	7o7Q	12753	2023-05-16	2021-04-13	3.6	4.18	—	4.0	0.010	1.54	10.0	0.08	14.43	0.01	1.769	11.99	0.63	14.5	84.1	1.4	-4.14	0.83	0.76	0.64	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	40530	5126	16	0	40	0	0	logfile
✘	6PVM	20493	2023-05-09	2019-07-21	4.5	4.24	—	4.3	0.006	1.18	0.0	0.06	12.60	0.01	2.154	6.75	0.87	15.6	84.1	0.3	-6.13	0.49	0.74	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21006	2576	6	0	2	0	0	logfile
✘	7CZS	30515	2023-05-14	2020-09-09	3.6	3.71	—	3.6	0.013	1.30	8.0	0.09	17.82	0.01	1.914	35.67	12.67	11.5	84.4	4.1	-4.03	0.57	0.66	1.26	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	34321	4310	32	0	71	0	0	logfile
✘	5GJQ	9511	2023-05-16	2016-07-01	4.35	4.02	—	3.8	0.016	1.83	29.0	0.09	16.70	0.01	1.073	47.82	10.02	11.3	84.5	4.2	-4.17	0.79	0.73	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	98461	13520	54	0	6	0	0	logfile
✘	7K0Y	22618	2023-05-16	2020-09-06	3.7	3.80	—	3.7	0.009	1.18	2.0	0.06	17.54	0.01	1.890	6.94	1.27	14.9	84.6	0.5	-5.42	0.74	0.76	1.42	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	39835	4814	7	74	0	0	0	logfile
✘	7AA5	11690	2023-05-08	2020-09-03	4.18	4.64	—	4.4	0.006	0.92	2.0	0.04	14.67	0.00	2.119	21.41	2.04	15.1	84.7	0.2	-4.78	0.69	0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19705	2448	5	0	1	0	8	logfile
✘	7BP0	30138	2023-05-16	2020-03-20	4.6	4.05	—	4.2	0.014	2.51	229.0	0.17	20.41	0.02	1.115	151.43	28.18	10.1	84.8	5.1	-1.64	0.62	0.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	41388	5244	12	0	0	0	0	logfile
✘	7LLK	23424	2023-05-16	2021-02-04	4.8	7.00	4.88	4.8	0.015	2.15	14.0	0.12	16.38	0.02	2.051	2.44	4.52	12.6	84.8	2.6	-3.42	0.81	0.73	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	38982	2397	47	0	108	0	18627	logfile
✘	6N58	0349	2023-05-12	2018-11-21	3.78	3.90	—	3.9	0.013	1.21	0.0	0.06	10.64	0.01	1.892	38.60	0.37	14.7	84.9	0.4	-4.74	0.73	0.82	2.09	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30189	3833	11	0	8	0	0	logfile
✘	6MiX	9132	2023-05-16	2018-09-20	3.6	4.57	—	14.0	0.007	1.19	0.0	0.07	16.40	0.01	2.212	9.79	2.30	14.6	85.0	0.4	-5.69	-0.03	0.00	0.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	43120	5348	4	0	0	0	0	logfile
✘	6RQT	4985	2023-05-16	2019-05-16	4.0	4.06	—	4.1	0.007	1.20	2.0	0.07	13.82	0.01	1.938	13.90	1.35	14.8	85.0	0.1	-5.39	0.64	0.60	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	39820	4915	22	32	6	0	0	logfile
✘	7YiH	33859	2023-05-09	2022-07-16	3.5	3.85	3.58	3.8	0.004	0.78	0.0	0.05	14.23	0.01	2.066	16.72	0.00	13.9	85.0	1.1	-2.65	0.61	0.68	1.55	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21321	2640	8	0	5	4	0	logfile
✘	7K1J	22624	2023-05-15	2020-09-07	3.9	3.96	—	3.9	0.010	1.24	0.0	0.07	17.63	0.01	2.066	7.83	1.09	14.5	85.0	0.5	-5.24	0.68	0.71	1.17	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	38040	4600	7	74	0	0	0	logfile
✘	7N62	24192	2023-05-03	2021-06-07	4.0	3.42	—	3.9	0.006	0.82	0.0	0.05	13.98	0.01	2.203	21.20	0.00	14.9	85.1	0.0	-2.74	0.73	0.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5613	712	4	0	5	0	0	logfile
✘	7YiJ	33860	2023-05-09	2022-07-16	3.8	4.24	3.93	4.1	0.004	0.92	0.0	0.05	14.45	0.01	2.135	19.50	0.00	13.3	85.3	1.4	-2.71	0.57	0.71	1.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21313	2640	5	0	1	0	0	logfile
✘	6PVN	20494	2023-05-09	2019-07-21	4.07	4.15	—	4.1	0.006	1.33	0.0	0.06	12.87	0.01	2.256	4.31	1.23	14.2	85.3	0.5	-6.84	0.68	0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20874	2576	6	0	2	0	0	logfile
✘	7BSP	30163	2023-05-05	2020-03-31	4.0	4.12	—	4.0	0.005	0.66	0.0	0.04	13.90	0.01	1.928	53.93	0.00	14.6	85.4	0.0	-7.27	0.68	0.87	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11010	1352	5	0	5	0	0	logfile
✘	5GJW	9515	2023-05-09	2016-07-02	3.9	4.02	—	4.0	0.012	1.51	20.0	0.08	11.56	0.01	1.844	12.82	1.50	12.8	85.5	1.7	-5.28	0.55	0.80	1.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21561	2676	14	0	29	0	0	logfile
✘	6F0K	4165	2023-05-16	2017-11-20	3.87	3.98	—	3.9	0.022	1.29	0.0	0.14	11.89	0.01	1.943	8.80	0.00	14.2	85.8	0.0	-5.22	0.65	0.72	1.34	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	39868	2504	10	0	10	0	19577	logfile

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