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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6ToA | 10542 | 2023-03-17 | 2019-12-11 | 3.47 | 3.57 | — | 3.5 | 0.009 | 1.24 | 0.0 | 0.07 | 10.85 | 0.01 | 2.110 | 11.06 | 0.54 | 11.8 | 88.0 | 0.1 | -5.85 | 0.77 | 0.86 | 3.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 67896 | 9006 | 42 | 0 | 0 | 0 | 0 | logfile |
✘ | 7JMH | 22394 | 2023-03-16 | 2020-07-31 | 4.5 | 5.68 | — | 4.4 | 0.005 | 1.02 | 0.0 | 0.05 | 10.48 | 0.01 | 1.373 | 9.43 | 0.46 | 11.7 | 88.2 | 0.1 | -4.60 | 0.56 | 0.31 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 120756 | 13500 | 12 | 0 | 3608 | 0 | 0 | logfile |
✘ | 6JGZ | 9824 | 2023-03-13 | 2019-02-16 | 4.6 | 4.96 | — | 4.6 | 0.007 | 1.13 | 0.0 | 0.06 | 11.54 | 0.01 | 2.171 | 11.98 | 0.73 | 11.3 | 88.3 | 0.4 | -4.06 | 0.78 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 109824 | 14368 | 12 | 0 | 4 | 0 | 0 | logfile |
✘ | 6Jii | 9834 | 2023-03-14 | 2019-02-21 | 4.2 | 4.38 | — | 4.1 | 0.008 | 1.12 | 0.0 | 0.06 | 11.41 | 0.01 | 2.208 | 7.63 | 0.57 | 11.2 | 88.4 | 0.4 | -4.07 | 0.78 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 115028 | 15012 | 16 | 0 | 16 | 0 | 0 | logfile |
✘ | 7JMJ | 22396 | 2023-03-16 | 2020-07-31 | 4.5 | 5.51 | — | 4.3 | 0.007 | 1.08 | 0.0 | 0.05 | 10.58 | 0.01 | 1.373 | 9.90 | 0.62 | 11.3 | 88.5 | 0.3 | -4.67 | 0.56 | 0.31 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 120756 | 13500 | 12 | 0 | 3608 | 0 | 0 | logfile |
✘ | 7K4C | 22664 | 2023-03-17 | 2020-09-15 | 3.78 | 4.46 | — | 4.3 | 0.009 | 1.09 | 0.0 | 0.06 | 11.45 | 0.01 | 2.296 | 5.28 | 0.00 | 11.4 | 88.5 | 0.2 | -5.34 | 0.74 | 0.80 | 1.36 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19744 | 2444 | 8 | 0 | 7 | 0 | 0 | logfile |
✘ | 7D06 | 30525 | 2023-03-16 | 2020-09-09 | 3.1 | 3.23 | — | 3.2 | 0.012 | 1.54 | 0.0 | 0.06 | 19.08 | 0.02 | 2.021 | 10.56 | 4.91 | 10.4 | 88.6 | 1.0 | -5.86 | 0.75 | 0.85 | 3.10 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18328 | 2374 | 15 | 0 | 12 | 0 | 0 | logfile |
✘ | 6TM2 | 10517 | 2023-03-12 | 2019-12-03 | 2.95 | 3.12 | — | 3.1 | 0.008 | 1.01 | 0.0 | 0.06 | 9.31 | 0.01 | 2.181 | 3.02 | 0.10 | 11.3 | 88.7 | 0.0 | -4.14 | 0.44 | 0.47 | 2.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 55254 | 7230 | 60 | 0 | 54 | 138 | 0 | logfile |
✘ | 6D7T | 7825 | 2023-03-17 | 2018-04-25 | 4.44 | 4.50 | — | 4.4 | 0.010 | 1.49 | 0.0 | 0.07 | 14.79 | 0.01 | 1.997 | 11.74 | 5.48 | 10.7 | 88.8 | 0.5 | -5.38 | 0.73 | 0.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19654 | 2444 | 8 | 0 | 6 | 0 | 0 | logfile |
✘ | 6UE9 | 20751 | 2023-03-16 | 2019-09-20 | 2.9 | 3.89 | — | 4.2 | 0.007 | 1.05 | 0.0 | 0.06 | 13.69 | 0.01 | 2.241 | 3.10 | 0.32 | 11.2 | 88.8 | 0.0 | -3.87 | 0.59 | 0.37 | 0.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18227 | 2475 | 17 | 0 | 12 | 0 | 0 | logfile |
✘ | 6PV6 | 20486 | 2023-03-16 | 2019-07-19 | 4.5 | 5.79 | — | 3.8 | 0.006 | 1.04 | 0.0 | 0.05 | 10.65 | 0.01 | 1.373 | 9.47 | 0.31 | 11.0 | 88.9 | 0.1 | -4.72 | 0.60 | 0.39 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 120756 | 13500 | 12 | 0 | 3608 | 0 | 0 | logfile |
✘ | 5TAQ | 8382 | 2023-03-16 | 2016-09-10 | 4.1 | 4.24 | 4.25 | 4.1 | 0.005 | 0.97 | 0.0 | 0.05 | 10.16 | 0.01 | 1.373 | 4.58 | 0.43 | 10.9 | 88.9 | 0.2 | -5.26 | 0.76 | 0.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 121456 | 13500 | 12 | 0 | 3720 | 0 | 0 | logfile |
✘ | 6SNH | 10257 | 2023-03-13 | 2019-08-24 | 3.9 | 4.16 | — | 3.9 | 0.008 | 1.24 | 1.0 | 0.06 | 14.34 | 0.00 | 2.181 | 19.70 | 1.49 | 11.0 | 88.9 | 0.1 | -4.30 | 0.65 | 0.71 | 2.25 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7315 | 918 | 4 | 0 | 1 | 1 | 0 | logfile |
✘ | 5M5H | 4155 | 2023-03-11 | 2016-10-21 | 4.5 | 2.29 | — | 2.2 | 0.007 | 1.50 | 0.0 | 0.08 | 12.37 | 0.01 | 2.186 | 39.89 | 0.00 | 8.7 | 88.9 | 2.4 | -5.94 | 0.14 | 0.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 1086 | 132 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 7AoD | 11841 | 2023-03-13 | 2020-10-14 | 4.5 | 4.61 | — | 4.5 | 0.007 | 0.89 | 0.0 | 0.05 | 14.84 | 0.01 | 1.858 | 27.36 | 1.95 | 10.7 | 88.9 | 0.3 | -4.20 | 0.79 | 0.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 59256 | 7466 | 34 | 0 | 12 | 0 | 0 | logfile |
✘ | 6JH6 | 9825 | 2023-03-12 | 2019-02-17 | 4.8 | 5.31 | — | 4.8 | 0.006 | 1.07 | 1.0 | 0.05 | 11.37 | 0.01 | 2.197 | 12.11 | 0.58 | 10.8 | 88.9 | 0.3 | -4.03 | 0.79 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 108924 | 14244 | 12 | 0 | 8 | 0 | 0 | logfile |
✘ | 6XXE | 10648 | 2023-03-14 | 2020-01-27 | 3.49 | 2.31 | — | 3.3 | 0.007 | 1.09 | 0.0 | 0.06 | 11.82 | 0.00 | 2.471 | 6.11 | 2.27 | 11.0 | 89.0 | 0.0 | -4.99 | 0.62 | 0.57 | 3.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12816 | 1776 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 6Ji8 | 9833 | 2023-03-14 | 2019-02-20 | 3.6 | 3.80 | — | 3.7 | 0.010 | 1.26 | 8.0 | 0.06 | 11.98 | 0.01 | 2.196 | 8.60 | 1.03 | 10.5 | 89.0 | 0.5 | -4.77 | 0.73 | 0.77 | 2.30 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 115060 | 15024 | 16 | 0 | 4 | 0 | 0 | logfile |
✘ | 6CFW | 7468 | 2023-03-17 | 2018-02-17 | 3.7 | 3.82 | — | 3.8 | 0.010 | 1.27 | 1.0 | 0.07 | 12.05 | 0.01 | 1.968 | 4.52 | 1.60 | 10.7 | 89.0 | 0.4 | -4.93 | 0.70 | 0.86 | 3.46 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19589 | 2530 | 17 | 0 | 4 | 0 | 0 | logfile |
✘ | 6iFK | 9653 | 2023-03-17 | 2018-09-20 | 3.2 | 3.32 | — | 3.3 | 0.009 | 1.20 | 1.0 | 0.06 | 12.74 | 0.01 | 2.046 | 6.33 | 1.01 | 10.7 | 89.0 | 0.3 | -4.87 | 0.74 | 0.82 | 3.58 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19448 | 2256 | 11 | 67 | 5 | 0 | 0 | logfile |