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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8iKA | 35507 | 2023-10-09 | 2023-02-28 | 2.75 | 2.89 | 2.81 | 2.9 | 0.008 | 1.22 | 0.0 | 0.07 | 12.95 | 0.02 | 2.225 | 4.42 | 0.00 | 1.5 | 98.5 | 0.0 | -0.45 | 0.82 | 0.88 | 4.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 122040 | 15900 | 60 | 0 | 0 | 0 | 0 | logfile |
✘ | 8SL0 | 40570 | 2023-10-02 | 2023-04-20 | 3.3 | 4.17 | 3.09 | 3.8 | 0.003 | 0.62 | 0.0 | 0.05 | 16.00 | 0.00 | 2.201 | 7.96 | 0.00 | 8.4 | 91.2 | 0.4 | -1.67 | 0.42 | 0.83 | 1.40 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 1737 | 228 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 7LWD | 23545 | 2023-10-03 | 2021-03-01 | 3.65 | 3.91 | 3.58 | 3.9 | 0.011 | 0.97 | 0.0 | 0.04 | 14.88 | 0.00 | 2.024 | 11.24 | 0.00 | 6.4 | 93.6 | 0.0 | -4.15 | 0.67 | 0.81 | 2.29 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6163 | 769 | 4 | 0 | 3 | 0 | 0 | logfile |
✘ | 7oTo | 13063 | 2023-10-05 | 2021-06-10 | 3.4 | 2.27 | — | 1.3 | 0.013 | 1.84 | 0.0 | 0.11 | 15.17 | 0.01 | 1.799 | 3.86 | 0.00 | 1.5 | 98.5 | 0.0 | 2.59 | 0.76 | 0.74 | 1.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10333 | 1313 | 4 | 0 | 4 | 0 | 0 | logfile |
✘ | 8EX7 | 28653 | 2023-10-02 | 2022-10-24 | 3.53 | 3.77 | 3.48 | 3.8 | 0.004 | 0.69 | 0.0 | 0.04 | 13.31 | 0.01 | 2.211 | 6.36 | 0.00 | 4.2 | 95.8 | 0.0 | 0.68 | 0.59 | 0.76 | 2.20 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3177 | 414 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 8AZS | 15770 | 2023-10-04 | 2022-09-06 | 2.9 | 2.78 | 2.55 | 2.8 | 0.011 | 1.50 | 0.0 | 0.12 | 16.09 | 0.01 | 0.017 | 1346.55 | 0.00 | 3.1 | 96.9 | 0.0 | -1.98 | 0.27 | 0.40 | 5.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9036 | 1224 | 36 | 0 | 0 | 0 | 0 | logfile |
✘ | 6XXD | 10647 | 2023-10-07 | 2020-01-27 | 3.22 | 2.31 | — | 3.1 | 0.007 | 1.05 | 0.0 | 0.06 | 11.45 | 0.00 | 2.647 | 2.40 | 0.00 | 5.7 | 94.3 | 0.0 | -2.51 | 0.70 | 0.68 | 2.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14896 | 2000 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 8D85 | 27247 | 2023-10-03 | 2022-06-07 | 3.81 | 4.26 | 4.04 | 4.2 | 0.003 | 0.53 | 0.0 | 0.04 | 11.75 | 0.00 | 2.357 | 4.77 | 0.00 | 4.1 | 95.8 | 0.1 | -2.45 | 0.68 | 0.64 | 0.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7093 | 865 | 10 | 0 | 11 | 0 | 0 | logfile |
✘ | 8EX4 | 28650 | 2023-10-02 | 2022-10-24 | 2.93 | 3.19 | 2.90 | 3.2 | 0.005 | 0.73 | 0.0 | 0.04 | 13.95 | 0.00 | 2.165 | 9.46 | 0.00 | 1.9 | 98.1 | 0.0 | 0.40 | 0.59 | 0.80 | 4.09 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3226 | 417 | 1 | 0 | 1 | 0 | 0 | logfile |
✘ | 8D7R | 27231 | 2023-10-04 | 2022-06-07 | 3.9 | 4.13 | 3.91 | 4.0 | 0.003 | 0.54 | 0.0 | 0.04 | 11.99 | 0.00 | 2.345 | 5.62 | 0.00 | 8.1 | 91.9 | 0.0 | -3.25 | 0.60 | 0.56 | 0.88 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9627 | 1167 | 12 | 0 | 16 | 0 | 0 | logfile |
✘ | 8BQW | 16189 | 2023-10-08 | 2023-01-18 | 2.3 | 2.12 | 2.14 | 2.2 | 0.008 | 1.14 | 0.0 | 0.07 | 8.96 | 0.00 | 0.052 | 12.77 | 0.00 | 9.6 | 90.4 | 0.0 | -3.78 | 0.46 | 0.75 | 7.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17385 | 2310 | 90 | 0 | 270 | 135 | 0 | logfile |
✘ | 8G3V | 29710 | 2023-10-10 | 2023-02-08 | 2.2 | 2.84 | 2.21 | 2.7 | 0.014 | 1.61 | 4.0 | 0.09 | 13.68 | 0.01 | 2.257 | 0.54 | 0.00 | 3.9 | 95.8 | 0.3 | -0.74 | 0.83 | 0.93 | 6.59 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20045 | 2500 | 28 | 0 | 61 | 0 | 0 | logfile |
✘ | 7L85 | 23222 | 2023-10-10 | 2020-12-31 | 2.9 | 3.14 | 2.89 | 3.1 | 0.025 | 1.68 | 0.0 | 0.10 | 9.89 | 0.01 | 2.365 | 2.39 | 0.00 | 2.3 | 97.7 | 0.0 | 0.88 | 0.81 | 0.89 | 4.84 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20556 | 2664 | 24 | 0 | 0 | 0 | 0 | logfile |
✘ | 8FPJ | 29366 | 2023-10-12 | 2023-01-04 | 2.74 | 2.94 | 2.78 | 3.0 | 0.004 | 0.69 | 0.0 | 0.04 | 14.26 | 0.00 | 2.008 | 5.89 | 0.00 | 5.7 | 94.3 | 0.0 | -0.24 | 0.69 | 0.82 | 2.96 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25960 | 1596 | 6 | 0 | 1 | 0 | 13143 | logfile |
✘ | 6VL6 | 21231 | 2023-10-10 | 2020-01-22 | 4.6 | 5.00 | 4.54 | 4.6 | 0.019 | 1.46 | 0.0 | 0.09 | 11.38 | 0.01 | 2.431 | 0.59 | 0.00 | 0.9 | 99.1 | 0.0 | 0.45 | 0.87 | 0.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21504 | 2640 | 24 | 0 | 0 | 0 | 0 | logfile |
✘ | 7RBU | 24402 | 2023-10-02 | 2021-07-06 | 3.7 | 2.38 | — | 2.2 | 0.006 | 0.80 | 0.0 | 0.05 | 12.53 | 0.00 | 2.167 | 6.95 | 0.00 | 9.1 | 90.7 | 0.2 | -2.50 | 0.74 | 0.77 | 4.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4107 | 510 | 6 | 0 | 7 | 0 | 0 | logfile |
✘ | 8Gi9 | 40063 | 2023-10-03 | 2023-03-13 | 2.84 | 3.09 | 2.82 | 3.1 | 0.009 | 1.11 | 0.0 | 0.10 | 15.66 | 0.00 | 1.878 | 8.12 | 0.00 | 4.6 | 95.4 | 0.0 | 1.20 | 0.57 | 0.79 | 4.20 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6852 | 720 | 3 | 0 | 39 | 45 | 0 | logfile |
✘ | 8SF0 | 40435 | 2023-10-10 | 2023-04-10 | 2.9 | 3.06 | 2.90 | 3.0 | 0.003 | 0.50 | 0.0 | 0.04 | 15.10 | 0.00 | 2.161 | 6.14 | 0.00 | 2.4 | 97.6 | 0.0 | 1.75 | 0.63 | 0.81 | 2.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | 2.01 | — | — | — | 2.36 | 20664 | 2512 | 8 | 0 | 8 | 0 | 0 | logfile |
✘ | 8HJ9 | 34835 | 2023-10-02 | 2022-11-22 | 3.12 | 3.29 | 3.00 | 3.2 | 0.004 | 0.65 | 0.0 | 0.04 | 15.54 | 0.00 | 2.234 | 10.94 | 0.00 | 2.7 | 97.3 | 0.0 | 1.80 | 0.43 | 0.76 | 3.45 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3274 | 416 | 1 | 0 | 1 | 0 | 0 | logfile |
✘ | 7o85 | 12761 | 2023-10-14 | 2021-04-14 | 3.3 | 3.50 | — | 3.5 | 0.002 | 0.48 | 0.0 | 0.04 | 13.51 | 0.00 | 1.470 | 7.44 | 0.00 | 3.3 | 96.7 | 0.0 | -0.25 | 0.71 | 0.75 | 2.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28525 | 3843 | 28 | 0 | 14 | 0 | 0 | logfile |