Table showing results for October 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8iKA	35507	2023-10-09	2023-02-28	2.75	2.89	2.81	2.9	0.008	1.22	0.0	0.07	12.95	0.02	2.225	4.42	0.00	1.5	98.5	0.0	-0.45	0.82	0.88	4.57	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	122040	15900	60	0	0	0	0	logfile
✘	8SL0	40570	2023-10-02	2023-04-20	3.3	4.17	3.09	3.8	0.003	0.62	0.0	0.05	16.00	0.00	2.201	7.96	0.00	8.4	91.2	0.4	-1.67	0.42	0.83	1.40	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	1737	228	1	0	0	0	0	logfile
✘	7LWD	23545	2023-10-03	2021-03-01	3.65	3.91	3.58	3.9	0.011	0.97	0.0	0.04	14.88	0.00	2.024	11.24	0.00	6.4	93.6	0.0	-4.15	0.67	0.81	2.29	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6163	769	4	0	3	0	0	logfile
✘	7oTo	13063	2023-10-05	2021-06-10	3.4	2.27	—	1.3	0.013	1.84	0.0	0.11	15.17	0.01	1.799	3.86	0.00	1.5	98.5	0.0	2.59	0.76	0.74	1.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10333	1313	4	0	4	0	0	logfile
✘	8EX7	28653	2023-10-02	2022-10-24	3.53	3.77	3.48	3.8	0.004	0.69	0.0	0.04	13.31	0.01	2.211	6.36	0.00	4.2	95.8	0.0	0.68	0.59	0.76	2.20	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3177	414	1	0	0	0	0	logfile
✘	8AZS	15770	2023-10-04	2022-09-06	2.9	2.78	2.55	2.8	0.011	1.50	0.0	0.12	16.09	0.01	0.017	1346.55	0.00	3.1	96.9	0.0	-1.98	0.27	0.40	5.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9036	1224	36	0	0	0	0	logfile
✘	6XXD	10647	2023-10-07	2020-01-27	3.22	2.31	—	3.1	0.007	1.05	0.0	0.06	11.45	0.00	2.647	2.40	0.00	5.7	94.3	0.0	-2.51	0.70	0.68	2.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14896	2000	16	0	0	0	0	logfile
✘	8D85	27247	2023-10-03	2022-06-07	3.81	4.26	4.04	4.2	0.003	0.53	0.0	0.04	11.75	0.00	2.357	4.77	0.00	4.1	95.8	0.1	-2.45	0.68	0.64	0.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7093	865	10	0	11	0	0	logfile
✘	8EX4	28650	2023-10-02	2022-10-24	2.93	3.19	2.90	3.2	0.005	0.73	0.0	0.04	13.95	0.00	2.165	9.46	0.00	1.9	98.1	0.0	0.40	0.59	0.80	4.09	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3226	417	1	0	1	0	0	logfile
✘	8D7R	27231	2023-10-04	2022-06-07	3.9	4.13	3.91	4.0	0.003	0.54	0.0	0.04	11.99	0.00	2.345	5.62	0.00	8.1	91.9	0.0	-3.25	0.60	0.56	0.88	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9627	1167	12	0	16	0	0	logfile
✘	8BQW	16189	2023-10-08	2023-01-18	2.3	2.12	2.14	2.2	0.008	1.14	0.0	0.07	8.96	0.00	0.052	12.77	0.00	9.6	90.4	0.0	-3.78	0.46	0.75	7.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17385	2310	90	0	270	135	0	logfile
✘	8G3V	29710	2023-10-10	2023-02-08	2.2	2.84	2.21	2.7	0.014	1.61	4.0	0.09	13.68	0.01	2.257	0.54	0.00	3.9	95.8	0.3	-0.74	0.83	0.93	6.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20045	2500	28	0	61	0	0	logfile
✘	7L85	23222	2023-10-10	2020-12-31	2.9	3.14	2.89	3.1	0.025	1.68	0.0	0.10	9.89	0.01	2.365	2.39	0.00	2.3	97.7	0.0	0.88	0.81	0.89	4.84	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20556	2664	24	0	0	0	0	logfile
✘	8FPJ	29366	2023-10-12	2023-01-04	2.74	2.94	2.78	3.0	0.004	0.69	0.0	0.04	14.26	0.00	2.008	5.89	0.00	5.7	94.3	0.0	-0.24	0.69	0.82	2.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25960	1596	6	0	1	0	13143	logfile
✘	6VL6	21231	2023-10-10	2020-01-22	4.6	5.00	4.54	4.6	0.019	1.46	0.0	0.09	11.38	0.01	2.431	0.59	0.00	0.9	99.1	0.0	0.45	0.87	0.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21504	2640	24	0	0	0	0	logfile
✘	7RBU	24402	2023-10-02	2021-07-06	3.7	2.38	—	2.2	0.006	0.80	0.0	0.05	12.53	0.00	2.167	6.95	0.00	9.1	90.7	0.2	-2.50	0.74	0.77	4.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4107	510	6	0	7	0	0	logfile
✘	8Gi9	40063	2023-10-03	2023-03-13	2.84	3.09	2.82	3.1	0.009	1.11	0.0	0.10	15.66	0.00	1.878	8.12	0.00	4.6	95.4	0.0	1.20	0.57	0.79	4.20	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6852	720	3	0	39	45	0	logfile
✘	8SF0	40435	2023-10-10	2023-04-10	2.9	3.06	2.90	3.0	0.003	0.50	0.0	0.04	15.10	0.00	2.161	6.14	0.00	2.4	97.6	0.0	1.75	0.63	0.81	2.42	—	—	—	—	—	—	—	—	—	—	—	—	—	2.01	—	—	—	2.36	20664	2512	8	0	8	0	0	logfile
✘	8HJ9	34835	2023-10-02	2022-11-22	3.12	3.29	3.00	3.2	0.004	0.65	0.0	0.04	15.54	0.00	2.234	10.94	0.00	2.7	97.3	0.0	1.80	0.43	0.76	3.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3274	416	1	0	1	0	0	logfile
✘	7o85	12761	2023-10-14	2021-04-14	3.3	3.50	—	3.5	0.002	0.48	0.0	0.04	13.51	0.00	1.470	7.44	0.00	3.3	96.7	0.0	-0.25	0.71	0.75	2.90	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	28525	3843	28	0	14	0	0	logfile

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