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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7XJi | 33228 | 2023-03-12 | 2022-04-18 | 3.9 | 3.60 | 3.70 | 3.9 | 0.003 | 0.60 | 0.0 | 0.04 | 13.86 | 0.00 | 2.165 | 9.02 | 0.00 | 4.3 | 95.7 | 0.0 | -0.25 | 0.61 | 0.78 | 2.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7851 | 1027 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 8A01 | 15044 | 2023-03-12 | 2022-05-26 | 3.2 | 3.25 | 3.20 | 3.2 | 0.002 | 0.44 | 0.0 | 0.05 | 14.81 | 0.00 | 2.289 | 4.13 | 0.00 | 2.0 | 98.0 | 0.0 | 0.02 | 0.48 | 0.86 | 2.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5511 | 717 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 8HJ9 | 34835 | 2023-03-12 | 2022-11-22 | 3.12 | 3.29 | 3.00 | 3.2 | 0.004 | 0.65 | 0.0 | 0.04 | 15.54 | 0.00 | 2.234 | 10.94 | 0.00 | 2.7 | 97.3 | 0.0 | 1.80 | 0.43 | 0.76 | 3.45 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3274 | 416 | 1 | 0 | 1 | 0 | 0 | logfile |
✘ | 5iRX | 8117 | 2023-03-15 | 2016-03-14 | 2.95 | 3.39 | 2.91 | 3.3 | 0.014 | 1.44 | 0.0 | 0.07 | 15.36 | 0.01 | 1.744 | 9.65 | 0.00 | 10.7 | 89.2 | 0.1 | -6.45 | 0.67 | 0.77 | 3.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13162 | 1726 | 12 | 0 | 20 | 0 | 0 | logfile |
✘ | 7M74 | 23708 | 2023-03-15 | 2021-03-26 | 3.93 | 4.17 | — | 3.1 | 0.003 | 0.73 | 0.0 | 0.11 | 9.61 | 0.01 | 1.330 | 3.92 | 0.00 | 3.0 | 97.0 | 0.0 | -3.25 | 0.91 | 0.78 | 1.54 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13457 | 1699 | 10 | 0 | 6 | 0 | 0 | logfile |
✘ | 6PM5 | 20388 | 2023-03-15 | 2019-07-01 | 3.1 | 3.38 | — | 3.4 | 0.002 | 0.49 | 0.0 | 0.06 | 6.82 | 0.00 | 2.275 | 4.99 | 0.00 | 2.4 | 97.6 | 0.0 | -4.42 | 0.52 | 0.78 | 3.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13975 | 1735 | 15 | 0 | 15 | 0 | 0 | logfile |
✘ | 8C9M | 16511 | 2023-03-17 | 2023-01-23 | 3.2 | 4.11 | 2.97 | 4.1 | 0.023 | 1.43 | 0.0 | 0.11 | 9.58 | 0.01 | 2.432 | 1.40 | 0.00 | 2.7 | 96.5 | 0.9 | -0.57 | 0.34 | 0.70 | 1.19 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21480 | 1368 | 6 | 0 | 0 | 0 | 10752 | logfile |
✘ | 6UWZ | 20928 | 2023-03-16 | 2019-11-06 | 2.69 | 2.88 | 2.77 | 2.8 | 0.011 | 0.82 | 0.0 | 0.05 | 13.95 | 0.01 | 1.501 | 8.35 | 0.00 | 5.6 | 94.4 | 0.0 | -2.64 | 0.74 | 0.87 | 4.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18330 | 2178 | 23 | 0 | 40 | 138 | 0 | logfile |
✘ | 7EQ9 | 31256 | 2023-03-14 | 2021-04-30 | 3.3 | 3.70 | 3.42 | 3.6 | 0.002 | 0.47 | 0.0 | 0.04 | 15.65 | 0.00 | 2.267 | 3.70 | 0.00 | 3.3 | 96.7 | 0.0 | 1.85 | 0.60 | 0.53 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62520 | 7620 | 60 | 0 | 0 | 0 | 0 | logfile |
✘ | 7P13 | 13154 | 2023-03-15 | 2021-07-01 | 2.29 | 1.96 | 2.28 | 1.7 | 0.016 | 1.06 | 0.0 | 0.07 | 14.07 | 0.01 | 2.430 | 5.24 | 0.00 | 3.3 | 96.7 | 0.0 | 2.06 | 0.82 | 0.87 | 4.22 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13727 | 1743 | 7 | 0 | 0 | 0 | 154 | logfile |
✘ | 7QFQ | 13947 | 2023-03-14 | 2021-12-06 | 3.6 | 3.83 | 3.58 | 4.0 | 0.002 | 0.54 | 0.0 | 0.04 | 12.93 | 0.00 | 2.177 | 8.31 | 0.00 | 5.4 | 94.6 | 0.0 | -0.70 | 0.65 | 0.70 | 1.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10659 | 1291 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 8BQV | 16188 | 2023-03-13 | 2023-01-18 | 2.0 | 1.96 | 1.89 | 1.9 | 0.008 | 1.01 | 0.0 | 0.07 | 8.75 | 0.00 | 0.000 | 15.01 | 0.00 | 6.8 | 93.2 | 0.0 | -2.59 | 0.54 | 0.77 | 8.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8595 | 1155 | 45 | 0 | 105 | 120 | 0 | logfile |
✘ | 8F0A | 28754 | 2023-03-16 | 2022-11-02 | 2.6 | 3.77 | 2.61 | 3.4 | 0.031 | 1.77 | 0.0 | 0.13 | 9.86 | 0.01 | 2.388 | 0.56 | 0.00 | 0.8 | 99.2 | 0.0 | 0.72 | 0.68 | 0.66 | 4.15 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18060 | 1212 | 9 | 0 | 0 | 0 | 9189 | logfile |
✘ | 7BSP | 30163 | 2023-03-14 | 2020-03-31 | 4.0 | 4.12 | — | 4.0 | 0.005 | 0.66 | 0.0 | 0.04 | 13.90 | 0.01 | 1.928 | 53.93 | 0.00 | 14.6 | 85.4 | 0.0 | -7.27 | 0.68 | 0.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11010 | 1352 | 5 | 0 | 5 | 0 | 0 | logfile |
✘ | 8GNJ | 34166 | 2023-03-12 | 2022-08-24 | 3.78 | 3.60 | 3.67 | 3.6 | 0.012 | 1.34 | 0.0 | 0.07 | 15.38 | 0.01 | 1.811 | 12.03 | 0.00 | 4.6 | 95.4 | 0.0 | -3.73 | 0.66 | 0.81 | 1.40 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5832 | 746 | 4 | 0 | 1 | 0 | 0 | logfile |
✘ | 6VK9 | 21225 | 2023-03-17 | 2020-01-19 | 3.8 | 3.95 | — | 3.9 | 0.010 | 1.57 | 16.0 | 0.09 | 13.96 | 0.01 | 2.023 | 6.68 | 0.00 | 9.9 | 90.1 | 0.0 | -3.98 | 0.66 | 0.84 | 3.12 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19808 | 2640 | 32 | 0 | 0 | 0 | 0 | logfile |
✘ | 6ZBD | 11151 | 2023-03-17 | 2020-06-08 | 3.21 | 3.97 | 3.37 | 3.6 | 0.010 | 1.19 | 0.0 | 0.08 | 13.68 | 0.01 | 2.466 | 0.97 | 0.00 | 0.9 | 99.1 | 0.0 | 0.87 | 0.85 | 0.78 | 1.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | 3.93 | — | — | — | 1.77 | 19519 | 1159 | 4 | 0 | 0 | 0 | 9896 | logfile |
✘ | 8AZS | 15770 | 2023-03-13 | 2022-09-06 | 2.9 | 2.78 | 2.55 | 2.8 | 0.011 | 1.50 | 0.0 | 0.12 | 16.09 | 0.01 | 0.017 | 1346.55 | 0.00 | 3.1 | 96.9 | 0.0 | -1.98 | 0.27 | 0.40 | 5.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9036 | 1224 | 36 | 0 | 0 | 0 | 0 | logfile |
✘ | 6oo7 | 20148 | 2023-03-16 | 2019-04-22 | 3.8 | 4.25 | 3.77 | 4.0 | 0.013 | 1.08 | 0.0 | 0.06 | 9.52 | 0.01 | 2.273 | 4.27 | 0.00 | 3.5 | 96.5 | 0.0 | -1.41 | 0.75 | 0.78 | 2.01 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16860 | 2394 | 8 | 0 | 4 | 0 | 0 | logfile |
✘ | 7oGR | 12886 | 2023-03-15 | 2021-05-07 | 3.0 | 3.10 | 2.89 | 3.1 | 0.003 | 0.69 | 0.0 | 0.05 | 13.65 | 0.01 | 2.309 | 3.41 | 0.00 | 5.2 | 94.8 | 0.0 | -4.69 | 0.68 | 0.80 | 2.46 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14135 | 1775 | 7 | 0 | 1 | 0 | 0 | logfile |