Table showing results for March 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7XJi	33228	2023-03-12	2022-04-18	3.9	3.60	3.70	3.9	0.003	0.60	0.0	0.04	13.86	0.00	2.165	9.02	0.00	4.3	95.7	0.0	-0.25	0.61	0.78	2.35	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7851	1027	6	0	1	0	0	logfile
✘	8A01	15044	2023-03-12	2022-05-26	3.2	3.25	3.20	3.2	0.002	0.44	0.0	0.05	14.81	0.00	2.289	4.13	0.00	2.0	98.0	0.0	0.02	0.48	0.86	2.87	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5511	717	3	0	0	0	0	logfile
✘	8HJ9	34835	2023-03-12	2022-11-22	3.12	3.29	3.00	3.2	0.004	0.65	0.0	0.04	15.54	0.00	2.234	10.94	0.00	2.7	97.3	0.0	1.80	0.43	0.76	3.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3274	416	1	0	1	0	0	logfile
✘	5iRX	8117	2023-03-15	2016-03-14	2.95	3.39	2.91	3.3	0.014	1.44	0.0	0.07	15.36	0.01	1.744	9.65	0.00	10.7	89.2	0.1	-6.45	0.67	0.77	3.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13162	1726	12	0	20	0	0	logfile
✘	7M74	23708	2023-03-15	2021-03-26	3.93	4.17	—	3.1	0.003	0.73	0.0	0.11	9.61	0.01	1.330	3.92	0.00	3.0	97.0	0.0	-3.25	0.91	0.78	1.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13457	1699	10	0	6	0	0	logfile
✘	6PM5	20388	2023-03-15	2019-07-01	3.1	3.38	—	3.4	0.002	0.49	0.0	0.06	6.82	0.00	2.275	4.99	0.00	2.4	97.6	0.0	-4.42	0.52	0.78	3.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13975	1735	15	0	15	0	0	logfile
✘	8C9M	16511	2023-03-17	2023-01-23	3.2	4.11	2.97	4.1	0.023	1.43	0.0	0.11	9.58	0.01	2.432	1.40	0.00	2.7	96.5	0.9	-0.57	0.34	0.70	1.19	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21480	1368	6	0	0	0	10752	logfile
✘	6UWZ	20928	2023-03-16	2019-11-06	2.69	2.88	2.77	2.8	0.011	0.82	0.0	0.05	13.95	0.01	1.501	8.35	0.00	5.6	94.4	0.0	-2.64	0.74	0.87	4.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18330	2178	23	0	40	138	0	logfile
✘	7EQ9	31256	2023-03-14	2021-04-30	3.3	3.70	3.42	3.6	0.002	0.47	0.0	0.04	15.65	0.00	2.267	3.70	0.00	3.3	96.7	0.0	1.85	0.60	0.53	0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	62520	7620	60	0	0	0	0	logfile
✘	7P13	13154	2023-03-15	2021-07-01	2.29	1.96	2.28	1.7	0.016	1.06	0.0	0.07	14.07	0.01	2.430	5.24	0.00	3.3	96.7	0.0	2.06	0.82	0.87	4.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13727	1743	7	0	0	0	154	logfile
✘	7QFQ	13947	2023-03-14	2021-12-06	3.6	3.83	3.58	4.0	0.002	0.54	0.0	0.04	12.93	0.00	2.177	8.31	0.00	5.4	94.6	0.0	-0.70	0.65	0.70	1.50	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10659	1291	1	0	0	0	0	logfile
✘	8BQV	16188	2023-03-13	2023-01-18	2.0	1.96	1.89	1.9	0.008	1.01	0.0	0.07	8.75	0.00	0.000	15.01	0.00	6.8	93.2	0.0	-2.59	0.54	0.77	8.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8595	1155	45	0	105	120	0	logfile
✘	8F0A	28754	2023-03-16	2022-11-02	2.6	3.77	2.61	3.4	0.031	1.77	0.0	0.13	9.86	0.01	2.388	0.56	0.00	0.8	99.2	0.0	0.72	0.68	0.66	4.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18060	1212	9	0	0	0	9189	logfile
✘	7BSP	30163	2023-03-14	2020-03-31	4.0	4.12	—	4.0	0.005	0.66	0.0	0.04	13.90	0.01	1.928	53.93	0.00	14.6	85.4	0.0	-7.27	0.68	0.87	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11010	1352	5	0	5	0	0	logfile
✘	8GNJ	34166	2023-03-12	2022-08-24	3.78	3.60	3.67	3.6	0.012	1.34	0.0	0.07	15.38	0.01	1.811	12.03	0.00	4.6	95.4	0.0	-3.73	0.66	0.81	1.40	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5832	746	4	0	1	0	0	logfile
✘	6VK9	21225	2023-03-17	2020-01-19	3.8	3.95	—	3.9	0.010	1.57	16.0	0.09	13.96	0.01	2.023	6.68	0.00	9.9	90.1	0.0	-3.98	0.66	0.84	3.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19808	2640	32	0	0	0	0	logfile
✘	6ZBD	11151	2023-03-17	2020-06-08	3.21	3.97	3.37	3.6	0.010	1.19	0.0	0.08	13.68	0.01	2.466	0.97	0.00	0.9	99.1	0.0	0.87	0.85	0.78	1.78	—	—	—	—	—	—	—	—	—	—	—	—	—	3.93	—	—	—	1.77	19519	1159	4	0	0	0	9896	logfile
✘	8AZS	15770	2023-03-13	2022-09-06	2.9	2.78	2.55	2.8	0.011	1.50	0.0	0.12	16.09	0.01	0.017	1346.55	0.00	3.1	96.9	0.0	-1.98	0.27	0.40	5.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9036	1224	36	0	0	0	0	logfile
✘	6oo7	20148	2023-03-16	2019-04-22	3.8	4.25	3.77	4.0	0.013	1.08	0.0	0.06	9.52	0.01	2.273	4.27	0.00	3.5	96.5	0.0	-1.41	0.75	0.78	2.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16860	2394	8	0	4	0	0	logfile
✘	7oGR	12886	2023-03-15	2021-05-07	3.0	3.10	2.89	3.1	0.003	0.69	0.0	0.05	13.65	0.01	2.309	3.41	0.00	5.2	94.8	0.0	-4.69	0.68	0.80	2.46	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14135	1775	7	0	1	0	0	logfile

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