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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6VGN | 21198 | 2023-05-08 | 2020-01-08 | 3.1 | 3.36 | — | 3.5 | 0.021 | 1.79 | 7.0 | 0.14 | 11.33 | 0.01 | 2.401 | 2.94 | 0.00 | 3.2 | 96.2 | 0.5 | 0.02 | 0.62 | 0.73 | 3.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20447 | 2660 | 21 | 0 | 7 | 0 | 0 | logfile |
✘ | 7PKP | 13476 | 2023-05-08 | 2021-08-26 | 3.1 | 3.25 | — | 3.2 | 0.008 | 0.69 | 0.0 | 0.04 | 14.18 | 0.00 | 2.238 | 15.25 | 0.00 | 8.7 | 91.3 | 0.0 | -4.06 | 0.76 | 0.83 | 2.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20360 | 2504 | 8 | 0 | 0 | 0 | 0 | logfile |
✘ | 7PKo | 13474 | 2023-05-08 | 2021-08-26 | 3.9 | 4.01 | — | 3.9 | 0.004 | 0.66 | 0.0 | 0.04 | 14.59 | 0.00 | 2.205 | 10.80 | 0.00 | 7.5 | 92.5 | 0.0 | -4.16 | 0.76 | 0.82 | 2.59 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20368 | 2504 | 8 | 0 | 0 | 0 | 0 | logfile |
✘ | 7QEV | 13942 | 2023-05-02 | 2021-12-03 | 2.9 | 3.46 | — | 3.1 | 0.009 | 0.86 | 0.0 | 0.05 | 13.68 | 0.00 | 2.164 | 5.92 | 0.00 | 4.3 | 95.7 | 0.0 | -0.15 | 0.79 | 0.86 | 3.19 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3204 | 383 | 6 | 0 | 8 | 8 | 0 | logfile |
✘ | 7P13 | 13154 | 2023-05-06 | 2021-07-01 | 2.29 | 1.96 | 2.28 | 1.7 | 0.016 | 1.06 | 0.0 | 0.07 | 14.07 | 0.01 | 2.430 | 5.24 | 0.00 | 3.3 | 96.7 | 0.0 | 2.06 | 0.82 | 0.87 | 4.22 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13727 | 1743 | 7 | 0 | 0 | 0 | 154 | logfile |
✘ | 6i53 | 4411 | 2023-05-06 | 2018-11-12 | 3.2 | 3.37 | 3.20 | 3.3 | 0.007 | 0.90 | 0.0 | 0.05 | 9.13 | 0.01 | 2.264 | 3.96 | 0.00 | 3.7 | 96.3 | 0.0 | -4.72 | 0.52 | 0.70 | 4.33 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15362 | 1821 | 16 | 0 | 34 | 0 | 0 | logfile |
✘ | 6UXA | 20931 | 2023-05-04 | 2019-11-07 | 4.5 | 5.05 | — | 6.0 | 0.005 | 0.77 | 0.0 | 0.06 | 4.56 | 0.00 | 2.628 | 0.00 | 0.00 | 3.8 | 96.2 | 0.0 | -2.56 | 0.71 | 0.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10344 | 2104 | 8 | 0 | 0 | 0 | 0 | logfile |
✘ | 7XJi | 33228 | 2023-05-03 | 2022-04-18 | 3.9 | 3.60 | 3.70 | 3.9 | 0.003 | 0.60 | 0.0 | 0.04 | 13.86 | 0.00 | 2.165 | 9.02 | 0.00 | 4.3 | 95.7 | 0.0 | -0.25 | 0.61 | 0.78 | 2.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7851 | 1027 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 6oLL | 20116 | 2023-05-09 | 2019-04-16 | 4.1 | 4.59 | — | 4.4 | 0.004 | 1.05 | 0.0 | 0.06 | 6.94 | 0.01 | 2.400 | 0.40 | 0.00 | 2.0 | 97.8 | 0.2 | -0.51 | 0.67 | 0.58 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10426 | 2114 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 7RKM | 24500 | 2023-05-04 | 2021-07-22 | 3.5 | 3.62 | — | 3.5 | 0.005 | 0.97 | 0.0 | 0.06 | 12.31 | 0.00 | 2.181 | 7.47 | 0.00 | 3.7 | 96.3 | 0.0 | -1.13 | 0.74 | 0.83 | 3.32 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9491 | 1201 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 5WC3 | 8795 | 2023-05-06 | 2017-06-29 | 3.5 | 3.53 | — | 3.5 | 0.015 | 1.18 | 0.0 | 0.06 | 9.37 | 0.01 | 1.925 | 12.86 | 0.00 | 8.0 | 90.5 | 1.5 | -5.20 | 0.79 | 0.76 | 2.30 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 65880 | 4170 | 30 | 0 | 0 | 0 | 33390 | logfile |
✘ | 8GNJ | 34166 | 2023-05-03 | 2022-08-24 | 3.78 | 3.60 | 3.67 | 3.6 | 0.012 | 1.34 | 0.0 | 0.07 | 15.38 | 0.01 | 1.811 | 12.03 | 0.00 | 4.6 | 95.4 | 0.0 | -3.73 | 0.66 | 0.81 | 1.40 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5832 | 746 | 4 | 0 | 1 | 0 | 0 | logfile |
✘ | 7VYH | 32205 | 2023-05-11 | 2021-11-14 | 2.9 | 3.02 | — | 3.1 | 0.007 | 0.74 | 0.0 | 0.05 | 14.31 | 0.01 | 2.198 | 8.58 | 0.00 | 3.6 | 96.3 | 0.1 | 0.11 | 0.75 | 0.86 | 3.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 27933 | 3488 | 27 | 0 | 16 | 0 | 0 | logfile |
✘ | 8HJ9 | 34835 | 2023-05-03 | 2022-11-22 | 3.12 | 3.29 | 3.00 | 3.2 | 0.004 | 0.65 | 0.0 | 0.04 | 15.54 | 0.00 | 2.234 | 10.94 | 0.00 | 2.7 | 97.3 | 0.0 | 1.80 | 0.43 | 0.76 | 3.45 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3274 | 416 | 1 | 0 | 1 | 0 | 0 | logfile |
✘ | 6HUo | 0282 | 2023-05-06 | 2018-10-09 | 3.26 | 3.38 | 3.25 | 3.3 | 0.006 | 0.89 | 0.0 | 0.06 | 8.62 | 0.01 | 2.257 | 4.69 | 0.00 | 3.8 | 96.2 | 0.0 | -4.15 | 0.74 | 0.83 | 4.30 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15227 | 1808 | 16 | 0 | 35 | 0 | 0 | logfile |
✘ | 7XL4 | 33272 | 2023-05-10 | 2022-04-21 | 3.86 | 3.92 | — | 3.8 | 0.001 | 0.36 | 0.0 | 0.04 | 9.42 | 0.00 | 2.274 | 4.13 | 0.00 | 1.4 | 98.6 | 0.0 | -4.82 | 0.78 | 0.75 | 1.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24560 | 3479 | 8 | 0 | 3 | 0 | 0 | logfile |
✘ | 7BSP | 30163 | 2023-05-05 | 2020-03-31 | 4.0 | 4.12 | — | 4.0 | 0.005 | 0.66 | 0.0 | 0.04 | 13.90 | 0.01 | 1.928 | 53.93 | 0.00 | 14.6 | 85.4 | 0.0 | -7.27 | 0.68 | 0.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11010 | 1352 | 5 | 0 | 5 | 0 | 0 | logfile |
✘ | 7oE7 | 12861 | 2023-05-05 | 2021-05-01 | 3.73 | 3.95 | 3.97 | 3.7 | 0.002 | 0.53 | 0.0 | 0.04 | 14.33 | 0.00 | 2.084 | 3.86 | 0.00 | 6.8 | 93.2 | 0.0 | -1.48 | 0.79 | 0.64 | 0.91 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11116 | 1382 | 1 | 0 | 2 | 0 | 0 | logfile |
✘ | 7P03 | 13142 | 2023-05-09 | 2021-06-29 | 3.45 | 3.78 | — | 3.7 | 0.006 | 0.68 | 0.0 | 0.04 | 13.86 | 0.00 | 1.801 | 6.52 | 0.00 | 5.4 | 94.6 | 0.0 | -0.70 | 0.62 | 0.71 | 1.37 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21149 | 1333 | 1 | 0 | 0 | 0 | 10498 | logfile |
✘ | 7oGR | 12886 | 2023-05-06 | 2021-05-07 | 3.0 | 3.10 | 2.89 | 3.1 | 0.003 | 0.69 | 0.0 | 0.05 | 13.65 | 0.01 | 2.309 | 3.41 | 0.00 | 5.2 | 94.8 | 0.0 | -4.69 | 0.68 | 0.80 | 2.46 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14135 | 1775 | 7 | 0 | 1 | 0 | 0 | logfile |