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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8T1o | 40973 | 2024-01-20 | 2023-06-02 | 3.3 | 3.56 | 3.30 | 3.5 | 0.003 | 0.59 | 0.0 | 0.04 | 14.78 | 0.00 | 2.146 | 8.73 | 0.00 | 3.0 | 96.9 | 0.1 | 0.93 | 0.60 | 0.69 | 1.99 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13800 | 1727 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 8D85 | 27247 | 2024-01-18 | 2022-06-07 | 3.81 | 4.26 | 4.04 | 4.2 | 0.003 | 0.53 | 0.0 | 0.04 | 19.55 | 0.00 | 2.357 | 4.77 | 0.00 | 4.1 | 95.8 | 0.1 | -2.45 | 0.68 | 0.64 | 0.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7093 | 865 | 10 | 0 | 11 | 0 | 0 | logfile |
✘ | 7JNA | 22403 | 2024-01-17 | 2020-08-04 | 3.6 | 3.74 | — | 3.8 | 0.005 | 0.72 | 0.0 | 0.05 | 12.95 | 0.03 | 2.215 | 12.10 | 0.00 | 4.3 | 95.7 | 0.0 | -3.83 | 0.63 | 0.71 | 1.86 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6432 | 834 | 9 | 0 | 15 | 0 | 0 | logfile |
✘ | 8JPo | 36485 | 2024-01-19 | 2023-06-12 | 3.4 | 3.43 | 3.16 | 3.4 | 0.004 | 0.63 | 0.0 | 0.04 | 12.94 | 0.00 | 2.267 | 6.38 | 0.00 | 2.8 | 97.2 | 0.0 | 0.44 | 0.75 | 0.90 | 3.16 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11476 | 1466 | 4 | 0 | 8 | 0 | 0 | logfile |
✘ | 8Hii | 34817 | 2024-01-18 | 2022-11-20 | 3.57 | 2.49 | 3.54 | 3.0 | 0.004 | 0.80 | 0.0 | 0.05 | 9.45 | 0.01 | 2.260 | 3.48 | 0.00 | 5.4 | 94.6 | 0.0 | -3.43 | 0.72 | 0.70 | 2.19 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8212 | 1055 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 8HiJ | 34818 | 2024-01-18 | 2022-11-20 | 3.54 | 2.56 | 3.51 | 3.0 | 0.004 | 0.72 | 1.0 | 0.05 | 9.92 | 0.01 | 2.315 | 3.83 | 0.00 | 5.2 | 94.8 | 0.0 | -3.81 | 0.69 | 0.69 | 2.24 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8245 | 1055 | 5 | 0 | 1 | 0 | 0 | logfile |
✘ | 7RBU | 24402 | 2024-01-17 | 2021-07-06 | 3.7 | 2.38 | — | 2.2 | 0.006 | 0.80 | 0.0 | 0.05 | 12.81 | 0.00 | 2.167 | 6.95 | 0.00 | 9.1 | 90.7 | 0.2 | -2.50 | 0.74 | 0.77 | 4.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4107 | 510 | 6 | 0 | 7 | 0 | 0 | logfile |
✘ | 7W0M | 32244 | 2024-01-19 | 2021-11-18 | 3.71 | 2.51 | 3.74 | 2.2 | 0.004 | 0.76 | 0.0 | 0.05 | 14.11 | 0.00 | 2.230 | 11.46 | 0.00 | 5.6 | 94.4 | 0.0 | -1.90 | 0.73 | 0.74 | 2.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8929 | 1134 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 8FU6 | 29453 | 2024-01-18 | 2023-01-16 | 2.9 | 3.13 | 2.94 | 3.2 | 0.002 | 0.60 | 0.0 | 0.04 | 12.46 | 0.00 | 2.199 | 3.83 | 0.00 | 2.6 | 97.4 | 0.0 | 0.07 | 0.58 | 0.80 | 3.34 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8834 | 1112 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 7WRL | 32732 | 2024-01-17 | 2022-01-27 | 3.51 | 3.69 | — | 3.6 | 0.006 | 1.03 | 0.0 | 0.06 | 14.71 | 0.01 | 2.289 | 5.84 | 0.00 | 13.4 | 86.6 | 0.0 | -4.19 | 0.64 | 0.78 | 2.31 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3251 | 419 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 5GW5 | 9541 | 2024-01-19 | 2016-09-08 | 4.6 | 4.75 | — | 4.7 | 0.002 | 0.58 | 0.0 | 0.04 | 7.37 | 0.00 | 2.136 | 6.87 | 0.01 | 4.5 | 95.4 | 0.1 | -3.73 | 0.74 | 0.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64544 | 8446 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 8EMH | 28248 | 2024-01-20 | 2022-09-27 | 3.63 | 4.77 | 3.84 | 3.8 | 0.004 | 0.68 | 0.0 | 0.04 | 15.52 | 0.00 | 2.084 | 13.38 | 0.01 | 2.8 | 97.1 | 0.1 | 0.72 | 0.88 | 0.78 | 1.41 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 65678 | 8025 | 14 | 127 | 0 | 0 | 0 | logfile |
✘ | 7X6Q | 33025 | 2024-01-19 | 2022-03-08 | 4.5 | 4.41 | 4.61 | 4.3 | 0.009 | 0.73 | 0.0 | 0.06 | 9.96 | 0.00 | 2.197 | 0.93 | 0.01 | 3.2 | 96.7 | 0.2 | -0.87 | 0.78 | 0.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64472 | 8440 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 6YJ4 | 10815 | 2024-01-20 | 2020-04-02 | 2.7 | 2.35 | 2.73 | 2.6 | 0.011 | 1.10 | 0.0 | 0.65 | 17.24 | 0.01 | 2.031 | 2.88 | 0.03 | 4.1 | 95.8 | 0.0 | -2.17 | 0.58 | 0.79 | 4.22 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 66311 | 8126 | 94 | 0 | 50 | 275 | 0 | logfile |
✘ | 8DUL | 27722 | 2024-01-20 | 2022-07-27 | 4.17 | 4.34 | 4.24 | 4.7 | 0.005 | 1.04 | 0.0 | 0.07 | 13.09 | 0.02 | 2.317 | 6.11 | 0.06 | 5.3 | 94.7 | 0.0 | -2.03 | 0.56 | 0.49 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14203 | 1802 | 15 | 0 | 10 | 0 | 0 | logfile |
✘ | 6ZKU | 11262 | 2024-01-19 | 2020-06-30 | 3.0 | 2.73 | — | 2.9 | 0.009 | 1.03 | 0.0 | 1.04 | 12.30 | 0.01 | 2.218 | 4.96 | 0.06 | 4.1 | 95.9 | 0.0 | -2.98 | 0.62 | 0.82 | 3.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 65505 | 7966 | 69 | 0 | 36 | 0 | 0 | logfile |
✘ | 7WZ3 | 32903 | 2024-01-18 | 2022-02-16 | 4.1 | 3.52 | — | 3.4 | 0.003 | 0.58 | 0.0 | 0.04 | 11.64 | 0.00 | 2.022 | 2.41 | 0.06 | 2.8 | 97.2 | 0.0 | -4.27 | 0.62 | 0.51 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 58551 | 7652 | 22 | 0 | 6 | 0 | 0 | logfile |
✘ | 6G2J | 4345 | 2024-01-20 | 2018-03-23 | 3.3 | 3.41 | 3.49 | 3.4 | 0.009 | 1.17 | 0.0 | 1.03 | 13.01 | 0.01 | 1.499 | 6.66 | 0.06 | 14.9 | 84.7 | 0.4 | -5.96 | 0.59 | 0.77 | 3.32 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 66811 | 8164 | 60 | 0 | 34 | 0 | 0 | logfile |
✘ | 6ZKT | 11261 | 2024-01-20 | 2020-06-30 | 2.8 | 2.58 | — | 2.8 | 0.008 | 1.00 | 0.0 | 1.03 | 12.20 | 0.01 | 2.200 | 4.93 | 0.07 | 3.9 | 96.1 | 0.0 | -2.94 | 0.57 | 0.81 | 4.03 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 66294 | 8070 | 67 | 0 | 36 | 0 | 0 | logfile |
✘ | 6Y5R | 10703 | 2024-01-20 | 2020-02-25 | 3.76 | 3.87 | 3.73 | 3.8 | 0.004 | 0.64 | 0.0 | 0.04 | 12.77 | 0.00 | 2.147 | 7.90 | 0.07 | 4.4 | 95.6 | 0.0 | -2.26 | 0.68 | 0.85 | 2.03 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13592 | 1758 | 6 | 0 | 8 | 0 | 0 | logfile |