Table showing results for May 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6JiY	9837	2023-05-05	2019-02-24	3.9	4.05	—	3.9	0.008	1.06	1.0	0.05	15.49	0.01	2.203	7.76	0.47	12.2	87.5	0.2	-5.76	0.73	0.78	1.40	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	115288	15056	20	0	32	0	0	logfile
✘	6MiX	9132	2023-05-16	2018-09-20	3.6	4.57	—	14.0	0.007	1.19	0.0	0.07	16.40	0.01	2.212	9.79	2.30	14.6	85.0	0.4	-5.69	-0.03	0.00	0.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	43120	5348	4	0	0	0	0	logfile
✘	6iRS	9721	2023-05-03	2018-11-14	3.3	3.44	—	3.4	0.011	1.36	0.0	0.07	12.69	0.01	2.150	13.11	3.66	8.8	90.3	0.9	-5.69	0.62	0.77	2.28	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7337	926	7	0	10	0	0	logfile
✘	6JCV	9798	2023-05-13	2019-01-30	2.92	4.05	—	3.7	0.007	0.90	0.0	0.06	13.94	0.01	2.341	5.00	0.00	5.2	94.8	0.0	-5.68	0.87	0.86	3.38	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30876	3912	31	0	24	96	0	logfile
✘	6RAY	4787	2023-05-16	2019-04-08	4.28	4.39	4.31	4.4	0.013	1.77	39.0	0.16	18.46	0.02	1.031	19.77	7.45	17.4	81.8	0.8	-5.68	0.58	0.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	39071	4887	18	13	6	0	0	logfile
✘	7U5U	26359	2023-05-08	2022-03-02	3.16	3.37	3.21	3.4	0.007	0.88	0.0	0.06	15.34	0.01	2.279	5.12	0.00	5.5	94.5	0.0	-5.67	0.67	0.77	3.21	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10035	1283	2	0	0	0	0	logfile
✘	6H3i	0133	2023-05-08	2018-07-18	3.5	3.59	—	3.5	0.009	0.92	0.0	0.05	10.08	0.01	2.012	39.59	0.40	21.4	78.4	0.2	-5.64	0.78	0.86	4.47	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20599	2597	3	0	0	0	53	logfile
✘	7F7F	31487	2023-05-05	2021-06-29	3.81	3.37	—	3.8	0.008	1.12	0.0	0.06	11.80	0.01	2.121	6.53	0.31	9.6	90.3	0.1	-5.60	0.64	0.70	2.89	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12076	1497	6	0	8	0	0	logfile
✘	6SW9	10320	2023-05-09	2019-09-20	4.2	5.88	4.46	3.0	0.016	1.26	0.0	0.06	18.23	0.04	1.769	31.76	0.80	19.0	80.8	0.2	-5.60	0.85	0.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	70661	4508	47	1593	41	42	0	logfile
✘	8E97	27958	2023-05-08	2022-08-26	4.19	3.55	4.21	3.4	0.007	1.06	6.0	0.07	13.30	0.01	1.822	12.52	1.35	13.4	85.9	0.7	-5.58	0.60	0.57	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20374	3074	10	0	15	0	0	logfile
✘	7S60	24845	2023-05-09	2021-09-12	3.7	4.13	—	4.0	0.009	1.42	3.0	0.07	16.05	0.01	2.157	3.93	1.35	5.3	94.6	0.1	-5.53	0.65	0.83	1.27	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21086	2679	5	0	4	0	0	logfile
✘	6SoF	10273	2023-05-12	2019-08-29	4.3	4.23	4.20	4.1	0.006	0.93	0.0	0.05	14.59	0.01	2.017	10.51	0.62	17.7	82.3	0.0	-5.47	0.82	0.72	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30333	1966	12	0	0	0	14564	logfile
✘	6JiU	9836	2023-05-04	2019-02-23	4.2	4.52	—	4.2	0.006	1.01	9.0	0.05	15.68	0.01	2.218	10.69	0.51	10.3	89.5	0.2	-5.44	0.78	0.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	112212	14684	20	0	24	0	0	logfile
✘	6Vi0	21208	2023-05-09	2020-01-10	3.43	3.96	3.49	3.8	0.008	1.12	3.0	0.10	13.99	0.01	2.241	6.11	1.23	7.8	92.0	0.2	-5.43	0.80	0.83	2.34	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20823	2418	45	0	135	0	0	logfile
✘	7K0Y	22618	2023-05-16	2020-09-06	3.7	3.80	—	3.7	0.009	1.18	2.0	0.06	17.54	0.01	1.890	6.94	1.27	14.9	84.6	0.5	-5.42	0.74	0.76	1.42	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	39835	4814	7	74	0	0	0	logfile
✘	7AMY	11827	2023-05-10	2020-10-09	3.75	3.87	3.71	3.8	0.010	0.89	0.0	0.05	14.93	0.00	2.177	20.18	0.66	13.8	85.9	0.3	-5.40	0.82	0.86	1.50	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24849	3177	9	0	0	0	0	logfile
✘	7AHE	11784	2023-05-04	2020-09-24	4.1	4.22	4.11	4.1	0.009	1.23	0.0	0.09	12.74	0.00	2.205	16.70	0.45	9.6	90.4	0.0	-5.40	0.69	0.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10060	1308	5	0	1	0	0	logfile
✘	6RQT	4985	2023-05-16	2019-05-16	4.0	4.06	—	4.1	0.007	1.20	2.0	0.07	13.82	0.01	1.938	13.90	1.35	14.8	85.0	0.1	-5.39	0.64	0.60	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	39820	4915	22	32	6	0	0	logfile
✘	7CFS	30346	2023-05-04	2020-06-28	3.56	3.72	—	3.7	0.008	0.94	0.0	0.06	15.94	0.01	1.835	5.64	0.60	5.9	94.1	0.0	-5.35	0.79	0.84	2.85	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9974	1278	6	0	10	0	0	logfile
✘	6PTJ	20471	2023-05-14	2019-07-15	3.8	4.13	—	4.0	0.008	1.12	1.0	0.06	14.87	0.01	2.011	6.46	0.39	10.6	89.2	0.2	-5.32	0.86	0.82	1.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	34361	4280	14	0	0	0	0	logfile

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