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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6JiY | 9837 | 2023-05-05 | 2019-02-24 | 3.9 | 4.05 | — | 3.9 | 0.008 | 1.06 | 1.0 | 0.05 | 15.49 | 0.01 | 2.203 | 7.76 | 0.47 | 12.2 | 87.5 | 0.2 | -5.76 | 0.73 | 0.78 | 1.40 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 115288 | 15056 | 20 | 0 | 32 | 0 | 0 | logfile |
✘ | 6MiX | 9132 | 2023-05-16 | 2018-09-20 | 3.6 | 4.57 | — | 14.0 | 0.007 | 1.19 | 0.0 | 0.07 | 16.40 | 0.01 | 2.212 | 9.79 | 2.30 | 14.6 | 85.0 | 0.4 | -5.69 | -0.03 | 0.00 | 0.22 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 43120 | 5348 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 6iRS | 9721 | 2023-05-03 | 2018-11-14 | 3.3 | 3.44 | — | 3.4 | 0.011 | 1.36 | 0.0 | 0.07 | 12.69 | 0.01 | 2.150 | 13.11 | 3.66 | 8.8 | 90.3 | 0.9 | -5.69 | 0.62 | 0.77 | 2.28 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7337 | 926 | 7 | 0 | 10 | 0 | 0 | logfile |
✘ | 6JCV | 9798 | 2023-05-13 | 2019-01-30 | 2.92 | 4.05 | — | 3.7 | 0.007 | 0.90 | 0.0 | 0.06 | 13.94 | 0.01 | 2.341 | 5.00 | 0.00 | 5.2 | 94.8 | 0.0 | -5.68 | 0.87 | 0.86 | 3.38 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30876 | 3912 | 31 | 0 | 24 | 96 | 0 | logfile |
✘ | 6RAY | 4787 | 2023-05-16 | 2019-04-08 | 4.28 | 4.39 | 4.31 | 4.4 | 0.013 | 1.77 | 39.0 | 0.16 | 18.46 | 0.02 | 1.031 | 19.77 | 7.45 | 17.4 | 81.8 | 0.8 | -5.68 | 0.58 | 0.59 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 39071 | 4887 | 18 | 13 | 6 | 0 | 0 | logfile |
✘ | 7U5U | 26359 | 2023-05-08 | 2022-03-02 | 3.16 | 3.37 | 3.21 | 3.4 | 0.007 | 0.88 | 0.0 | 0.06 | 15.34 | 0.01 | 2.279 | 5.12 | 0.00 | 5.5 | 94.5 | 0.0 | -5.67 | 0.67 | 0.77 | 3.21 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10035 | 1283 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 6H3i | 0133 | 2023-05-08 | 2018-07-18 | 3.5 | 3.59 | — | 3.5 | 0.009 | 0.92 | 0.0 | 0.05 | 10.08 | 0.01 | 2.012 | 39.59 | 0.40 | 21.4 | 78.4 | 0.2 | -5.64 | 0.78 | 0.86 | 4.47 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20599 | 2597 | 3 | 0 | 0 | 0 | 53 | logfile |
✘ | 7F7F | 31487 | 2023-05-05 | 2021-06-29 | 3.81 | 3.37 | — | 3.8 | 0.008 | 1.12 | 0.0 | 0.06 | 11.80 | 0.01 | 2.121 | 6.53 | 0.31 | 9.6 | 90.3 | 0.1 | -5.60 | 0.64 | 0.70 | 2.89 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12076 | 1497 | 6 | 0 | 8 | 0 | 0 | logfile |
✘ | 6SW9 | 10320 | 2023-05-09 | 2019-09-20 | 4.2 | 5.88 | 4.46 | 3.0 | 0.016 | 1.26 | 0.0 | 0.06 | 18.23 | 0.04 | 1.769 | 31.76 | 0.80 | 19.0 | 80.8 | 0.2 | -5.60 | 0.85 | 0.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 70661 | 4508 | 47 | 1593 | 41 | 42 | 0 | logfile |
✘ | 8E97 | 27958 | 2023-05-08 | 2022-08-26 | 4.19 | 3.55 | 4.21 | 3.4 | 0.007 | 1.06 | 6.0 | 0.07 | 13.30 | 0.01 | 1.822 | 12.52 | 1.35 | 13.4 | 85.9 | 0.7 | -5.58 | 0.60 | 0.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20374 | 3074 | 10 | 0 | 15 | 0 | 0 | logfile |
✘ | 7S60 | 24845 | 2023-05-09 | 2021-09-12 | 3.7 | 4.13 | — | 4.0 | 0.009 | 1.42 | 3.0 | 0.07 | 16.05 | 0.01 | 2.157 | 3.93 | 1.35 | 5.3 | 94.6 | 0.1 | -5.53 | 0.65 | 0.83 | 1.27 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21086 | 2679 | 5 | 0 | 4 | 0 | 0 | logfile |
✘ | 6SoF | 10273 | 2023-05-12 | 2019-08-29 | 4.3 | 4.23 | 4.20 | 4.1 | 0.006 | 0.93 | 0.0 | 0.05 | 14.59 | 0.01 | 2.017 | 10.51 | 0.62 | 17.7 | 82.3 | 0.0 | -5.47 | 0.82 | 0.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30333 | 1966 | 12 | 0 | 0 | 0 | 14564 | logfile |
✘ | 6JiU | 9836 | 2023-05-04 | 2019-02-23 | 4.2 | 4.52 | — | 4.2 | 0.006 | 1.01 | 9.0 | 0.05 | 15.68 | 0.01 | 2.218 | 10.69 | 0.51 | 10.3 | 89.5 | 0.2 | -5.44 | 0.78 | 0.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 112212 | 14684 | 20 | 0 | 24 | 0 | 0 | logfile |
✘ | 6Vi0 | 21208 | 2023-05-09 | 2020-01-10 | 3.43 | 3.96 | 3.49 | 3.8 | 0.008 | 1.12 | 3.0 | 0.10 | 13.99 | 0.01 | 2.241 | 6.11 | 1.23 | 7.8 | 92.0 | 0.2 | -5.43 | 0.80 | 0.83 | 2.34 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20823 | 2418 | 45 | 0 | 135 | 0 | 0 | logfile |
✘ | 7K0Y | 22618 | 2023-05-16 | 2020-09-06 | 3.7 | 3.80 | — | 3.7 | 0.009 | 1.18 | 2.0 | 0.06 | 17.54 | 0.01 | 1.890 | 6.94 | 1.27 | 14.9 | 84.6 | 0.5 | -5.42 | 0.74 | 0.76 | 1.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 39835 | 4814 | 7 | 74 | 0 | 0 | 0 | logfile |
✘ | 7AMY | 11827 | 2023-05-10 | 2020-10-09 | 3.75 | 3.87 | 3.71 | 3.8 | 0.010 | 0.89 | 0.0 | 0.05 | 14.93 | 0.00 | 2.177 | 20.18 | 0.66 | 13.8 | 85.9 | 0.3 | -5.40 | 0.82 | 0.86 | 1.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24849 | 3177 | 9 | 0 | 0 | 0 | 0 | logfile |
✘ | 7AHE | 11784 | 2023-05-04 | 2020-09-24 | 4.1 | 4.22 | 4.11 | 4.1 | 0.009 | 1.23 | 0.0 | 0.09 | 12.74 | 0.00 | 2.205 | 16.70 | 0.45 | 9.6 | 90.4 | 0.0 | -5.40 | 0.69 | 0.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10060 | 1308 | 5 | 0 | 1 | 0 | 0 | logfile |
✘ | 6RQT | 4985 | 2023-05-16 | 2019-05-16 | 4.0 | 4.06 | — | 4.1 | 0.007 | 1.20 | 2.0 | 0.07 | 13.82 | 0.01 | 1.938 | 13.90 | 1.35 | 14.8 | 85.0 | 0.1 | -5.39 | 0.64 | 0.60 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 39820 | 4915 | 22 | 32 | 6 | 0 | 0 | logfile |
✘ | 7CFS | 30346 | 2023-05-04 | 2020-06-28 | 3.56 | 3.72 | — | 3.7 | 0.008 | 0.94 | 0.0 | 0.06 | 15.94 | 0.01 | 1.835 | 5.64 | 0.60 | 5.9 | 94.1 | 0.0 | -5.35 | 0.79 | 0.84 | 2.85 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9974 | 1278 | 6 | 0 | 10 | 0 | 0 | logfile |
✘ | 6PTJ | 20471 | 2023-05-14 | 2019-07-15 | 3.8 | 4.13 | — | 4.0 | 0.008 | 1.12 | 1.0 | 0.06 | 14.87 | 0.01 | 2.011 | 6.46 | 0.39 | 10.6 | 89.2 | 0.2 | -5.32 | 0.86 | 0.82 | 1.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 34361 | 4280 | 14 | 0 | 0 | 0 | 0 | logfile |